Experiment set9IT058 for Sinorhizobium meliloti 1021

Compare to:

Sodium succinate dibasic hexahydrate carbon source

200 most important genes:

  gene name fitness t score description  
SMc02572 -8.9 -5.7 imidazole glycerol phosphate synthase subunit HisH compare
SMc00236 -7.8 -5.4 Indole-3-glycerol phosphate synthase compare
SMc02766 -7.4 -15.0 tryptophan synthase subunit beta compare
SMc02838 -7.3 -7.1 phosphoglyceromutase compare
SMc00495 -7.2 -4.7 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
SMc01843 -7.1 -7.0 5,10-methylenetetrahydrofolate reductase compare
SMc01494 -7.0 -11.6 phosphoserine phosphatase compare
SMc00917 -6.7 -4.7 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
SMc02899 -6.7 -10.3 prephenate dehydratase compare
SMc01726 -6.5 -6.3 acetylglutamate kinase compare
SMc00918 -6.4 -6.2 ATP phosphoribosyltransferase regulatory subunit compare
SMc00235 -6.4 -7.6 anthranilate phosphoribosyltransferase compare
SMc00640 -6.4 -4.4 phosphoserine aminotransferase compare
SMc02765 -6.3 -14.3 tryptophan synthase subunit alpha compare
SMc02717 -6.3 -9.7 2-isopropylmalate synthase compare
SMc00711 -6.2 -4.3 cyclohexadienyl dehydrogenase compare
SMa1635 -6.2 -2.3 hypothetical protein compare
SMc01028 -6.1 -11.0 phosphopyruvate hydratase compare
SMc04045 -6.1 -8.4 dihydroxy-acid dehydratase compare
SM_b21176 -6.0 -4.2 phosphate uptake ABC transporter substrate-binding protein precursor compare
SMc00615 -6.0 -12.2 phosphoribosylaminoimidazole synthetase compare
SMc00993 -6.0 -9.2 phosphoribosylamine--glycine ligase compare
SMc04405 -6.0 -10.8 3-isopropylmalate dehydrogenase compare
SMc01054 -6.0 -5.6 required for sulfate utilization, putative electron source for sulfite reductase CysI (from data) compare
SMc03797 -6.0 -9.9 homoserine O-succinyltransferase compare
SMc01431 -5.9 -10.6 acetolactate synthase 3 catalytic subunit compare
SMc00494 -5.9 -2.2 phosphoribosylformylglycinamidine synthase subunit PurS compare
SMc02124 -5.8 -11.2 nitrite reductase compare
SMc03823 -5.8 -11.7 isopropylmalate isomerase large subunit compare
SMc02574 -5.8 -5.6 imidazoleglycerol-phosphate dehydratase compare
SMc04026 -5.7 -9.5 glutamate synthase compare
SMc00092 -5.7 -10.2 phosphoadenosine phosphosulfate reductase compare
SMc02562 -5.6 -6.7 phosphoenolpyruvate carboxykinase compare
SMc01139 -5.4 -5.7 RNA polymerase factor sigma-54 compare
SMc00131 -5.4 -15.9 transcriptional regulator compare
SMc00614 -5.2 -7.1 phosphoribosylglycinamide formyltransferase compare
SMc02767 -5.2 -11.3 N-(5'-phosphoribosyl)anthranilate isomerase compare
SMc00091 -5.1 -9.8 sulfate adenylyltransferase compare
SMc02570 -5.1 -7.1 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
SMc02123 -5.1 -4.3 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
SMc04088 -5.0 -13.0 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
SMc02217 -5.0 -6.9 O-succinylhomoserine sulfhydrylase compare
SMc00293 -5.0 -9.5 homoserine dehydrogenase compare
SMc02725 -5.0 -12.5 anthranilate synthase compare
SMc04002 -5.0 -7.9 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
SMc02245 -5.0 -5.9 dihydroorotate dehydrogenase 2 compare
SMc03979 -5.0 -3.4 glyceraldehyde-3-phosphate dehydrogenase compare
SMc04028 -4.9 -17.4 glutamate synthase compare
SM_b20613 -4.9 -8.7 C4-dicarboxylate transport transcriptional regulator compare
SMc03112 -4.8 -16.4 B12-dependent methionine synthase compare
SM_b21177 -4.8 -7.3 phosphate uptake ABC transporter ATP-binding protein compare
SMc00488 -4.7 -17.2 phosphoribosylformylglycinamidine synthase II compare
SMc02569 -4.7 -4.5 imidazole glycerol phosphate synthase subunit HisF compare
SMc03981 -4.7 -4.7 phosphoglycerate kinase compare
SMc02707 -4.6 -5.4 hypothetical protein compare
SM_b21175 -4.6 -5.1 phosphate uptake ABC transporter permease compare
SM_b20612 -4.6 -8.7 C4-dicarboxylate transport sensor protein conserved
SMc00554 -4.6 -7.6 amidophosphoribosyltransferase compare
SMc00090 -4.4 -8.7 sulfate adenylyltransferase compare
SMc04001 -4.4 -1.7 phosphoribosylaminoimidazole carboxylase catalytic subunit protein compare
SMc00294 -4.4 -13.0 aminotransferase compare
SMc03776 -4.4 -4.3 gamma-glutamyl kinase compare
SMc01004 -4.3 -8.4 phosphoribosyl-AMP cyclohydrolase compare
SMc03229 -4.3 -2.8 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
SMc00493 -4.2 -7.4 phosphoribosylformylglycinamidine synthase I compare
SMc03777 -4.2 -7.6 gamma-glutamyl phosphate reductase compare
SMc02137 -4.2 -4.1 ornithine carbamoyltransferase compare
SMc03069 -4.2 -2.6 6-phosphogluconolactonase compare
SMc02165 -3.8 -6.4 orotate phosphoribosyltransferase compare
SMc02166 -3.8 -8.5 dihydroorotase compare
SMc02138 -3.8 -5.7 acetylornithine transaminase compare
SM_b20611 -3.8 -13.5 C4-dicarboxylate transporter DctA conserved
SMc03795 -3.7 -1.9 isopropylmalate isomerase small subunit compare
SMc00412 -3.7 -5.0 orotidine 5'-phosphate decarboxylase compare
SMc01801 -3.7 -3.2 N-acetylglutamylphosphate reductase (EC 1.2.1.38) (from data) compare
SMc02755 -3.6 -5.5 S-adenosyl-L-homocysteine hydrolase compare
SMc01053 -3.6 -5.3 siroheme synthase compare
SMc04346 -3.5 -4.9 ketol-acid reductoisomerase compare
SMc02307 -3.5 -7.1 histidinol dehydrogenase compare
SMc01770 -3.5 -1.6 serine hydroxymethyltransferase compare
SMc00017 -3.4 -1.7 homoserine kinase compare
SMc00641 -3.4 -5.1 D-3-phosphoglycerate dehydrogenase compare
SMc01360 -3.4 -2.3 aspartate carbamoyltransferase catalytic subunit compare
SMc02246 -3.1 -1.1 hypothetical protein compare
SM_b21174 -3.1 -5.6 phosphate uptake ABC transporter permease compare
SMc01881 -2.9 -2.8 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
SMc04330 -2.9 -2.6 trimethylamine methyltransferase compare
SMc02640 -2.6 -4.9 UDP-glucuronic acid epimerase compare
SMc00053 -2.6 -0.9 monovalent cation/H+ antiporter subunit C compare
SMc01440 -2.4 -6.5 hydrolase serine protease transmembrane protein compare
SMc00876 -2.4 -2.8 ATP-binding MRP protein compare
SMc01206 -2.4 -1.7 queuine tRNA-ribosyltransferase compare
SMc01207 -2.3 -2.1 S-adenosylmethionine--tRNA ribosyltransferase-isomerase compare
SMc01430 -2.3 -5.9 acetolactate synthase 3 regulatory subunit compare
SMc00982 -2.1 -5.7 dioxygenase compare
SMc01880 -2.0 -1.4 pantoate--beta-alanine ligase compare
SMc02909 -2.0 -1.8 transglycosylase transmembrane protein compare
SMc03978 -1.9 -1.3 transketolase compare
SMc02685 -1.9 -3.3 hypothetical protein compare
SMc01441 -1.9 -4.9 membrane bound protease compare
SMc02850 -1.8 -1.2 DNA polymerase I compare
SMc02641 -1.8 -2.0 UDP-glucose 6-dehydrogenase compare
SM_b20026 -1.8 -1.6 hypothetical protein compare
SMc01361 -1.8 -2.4 dihydroorotase compare
SMc02683 -1.8 -2.2 hypothetical protein compare
SMc00010 -1.7 -1.2 cytochrome C oxidase polypeptide I transmembrane protein compare
SMc02975 -1.7 -5.4 phosphoenolpyruvate carboxykinase regulator transcription regulator protein compare
SMc02983 -1.7 -5.4 ornithine, DAP, or arginine decarboxylase compare
SMc01124 -1.6 -5.9 PII uridylyl-transferase compare
SMc00760 -1.6 -3.7 recombinase A compare
SMc01842 -1.6 -1.8 methyltransferase transcription regulator protein compare
SMc00963 -1.5 -2.0 hypothetical protein compare
SMc00761 -1.5 -7.8 oxidoreductase compare
SMc02544 -1.5 -1.1 hypothetical protein compare
SMc01852 -1.5 -6.1 pyrophosphate--fructose-6-phosphate 1-phosphotransferase compare
SMc02055 -1.4 -1.4 phytoene synthase compare
SMc02582 -1.4 -2.6 hypothetical protein compare
SMc02659 -1.4 -3.8 GTP pyrophosphokinase (ATP:GTP 3'-pyrophosphotransferase) protein compare
SMc02510 -1.3 -0.6 ferric uptake regulation protein compare
SMc02280 -1.3 -1.2 hypothetical protein compare
SMc00169 -1.3 -9.3 malic enzyme compare
SMc02145 -1.3 -0.6 signal peptide protein compare
SMa0846 -1.2 -1.3 transposase, fragment compare
SMc01723 -1.2 -1.8 hypothetical protein compare
SMc01578 -1.2 -7.1 aspartate aminotransferase compare
SMc00914 -1.2 -2.1 oxidoreductase compare
SMc03763 -1.2 -0.8 cytosine-specific methyltransferase compare
SMc00981 -1.2 -3.7 ferredoxin protein compare
SMa0450 -1.1 -1.4 hypothetical protein compare
SMc00580 -1.1 -1.9 4-hydroxythreonine-4-phosphate dehydrogenase compare
SMc04348 -1.1 -1.1 transcriptional regulator compare
SMc02908 -1.1 -2.5 recombination protein RecR compare
SMc01522 -1.1 -1.6 hypothetical protein compare
SMa1921 -1.1 -1.8 hypothetical protein compare
SMc00815 -1.1 -0.6 inosine 5'-monophosphate dehydrogenase compare
SMc04454 -1.1 -4.2 ABC transporter ATP-binding protein compare
SM_b20302 -1.1 -1.7 hypothetical protein compare
SMc04121 -1.1 -1.5 uracil phosphoribosyltransferase compare
SMc02521 -1.1 -2.9 glycerol-3-phosphate regulon repressor transcription regulator protein compare
SM_b20258 -1.0 -2.3 transcriptional regulator compare
SMc04220 -1.0 -1.3 transcriptional regulator compare
SMc01427 -1.0 -1.3 hypothetical protein compare
SMc01183 -1.0 -0.5 LexA repressor compare
SMc02164 -1.0 -1.9 fructokinase compare
SMc02450 -1.0 -2.2 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase compare
SMc00556 -1.0 -2.7 DNA repair protein RadA compare
SMc00987 -1.0 -1.3 hypothetical protein compare
SMc02234 -1.0 -1.2 hypothetical protein compare
SMc02050 -1.0 -2.4 trigger factor compare
SMc02867 -1.0 -1.8 multidrug-efflux system transmembrane protein compare
SMc00569 -1.0 -2.3 hypothetical protein compare
SMc03279 -1.0 -1.8 transposase number 2 for insertion sequence ISRM28 compare
SM_b20294 -1.0 -1.2 transcriptional regulator NanR compare
SM_b21482 -0.9 -2.0 hypothetical protein compare
SM_b21580 -0.9 -1.2 hypothetical protein compare
SMc02564 -0.9 -1.8 LysM domain/BON superfamily protein compare
SMc02753 -0.9 -0.6 PTS system transporter subunit IIA compare
SMa1118 -0.9 -1.4 HspC2 heat shock protein compare
SMc00405 -0.9 -4.0 hypothetical protein compare
SMc04000 -0.9 -0.7 hypothetical protein compare
SMc03135 -0.9 -2.1 amino-acid transport system ATP-binding ABC transporter protein compare
SMc02478 -0.9 -4.8 hypothetical protein compare
SMc01579 -0.9 -1.1 hypothetical protein compare
SMc02576 -0.9 -1.2 acetyltransferase compare
SM_b20320 -0.9 -1.2 TRAP-type large permease component compare
SMa0448 -0.9 -1.8 hypothetical protein compare
SMc02407 -0.9 -3.9 hypothetical protein compare
SMc01220 -0.9 -2.3 lipopolysaccharide core biosynthesis glycosyl transferase compare
SMc02677 -0.9 -3.3 pyrroline-5-carboxylate reductase compare
SMc02112 -0.9 -2.5 hypothetical protein compare
SMc01043 -0.9 -5.0 nitrogen assimilation regulatory protein compare
SM_b21501 -0.9 -1.8 hypothetical protein compare
SMc02051 -0.9 -1.7 hypothetical protein compare
SMc02172 -0.9 -3.8 transcriptional regulator compare
SMc03249 -0.9 -1.5 hypothetical protein compare
SMc03008 -0.8 -0.8 chemotaxis protein compare
SMc01857 -0.8 -1.5 cell division protein MraZ compare
SMc01725 -0.8 -1.5 hypothetical protein compare
SMa1700 -0.8 -1.5 hypothetical protein compare
SMa0905 -0.8 -1.0 hypothetical protein compare
SMc02786 -0.8 -3.9 translocase transmembrane protein compare
SMc01933 -0.8 -1.1 hypothetical protein compare
SMc01145 -0.8 -1.9 hypothetical protein compare
SMc00450 -0.8 -0.9 protoheme IX farnesyltransferase compare
SMc03980 -0.8 -2.5 hypothetical protein compare
SMc02724 -0.8 -1.8 hypothetical protein compare
SMc00513 -0.8 -3.7 amino acid-binding periplasmic protein compare
SMc01187 -0.8 -0.9 rare lipoprotein A compare
SMc01091 -0.8 -1.7 hypothetical protein compare
SMa1036 -0.8 -3.6 hypothetical protein compare
SMc01404 -0.8 -2.3 aspartate racemase compare
SMc02058 -0.8 -2.1 YAJC protein compare
SMc00709 -0.8 -2.1 hypothetical protein compare
SMc00191 -0.8 -1.2 hypothetical protein compare
SMc00667 -0.8 -1.4 hypothetical protein compare
SM_b20387 -0.8 -1.0 transcriptional regulator compare
SMc00414 -0.7 -3.6 hypothetical protein compare
SMc03100 -0.7 -0.7 hypothetical protein compare
SMc02778 -0.7 -1.0 hydroxyacid aldolase compare
SM_b21591 -0.7 -1.3 GntR family transcriptional regulator compare


Specific Phenotypes

For 2 genes in this experiment

For carbon source Sodium succinate dibasic hexahydrate in Sinorhizobium meliloti 1021

For carbon source Sodium succinate dibasic hexahydrate across organisms