Experiment set9IT058 for Desulfovibrio vulgaris Hildenborough JW710

Compare to:

Pyruvate (fermenting) with Na2S as sulfur source + 0.1% Yeast Extract

200 most detrimental genes:

  gene name fitness t score description  
DVU2867 +2.2 4.2 holin (TIGR) compare
DVU0043 fliQ +1.6 12.8 flagellar biosynthetic protein FliQ (TIGR) compare
DVU0311 +1.5 11.8 flagellar assembly protein FliH, putative (TIGR) compare
DVU0310 fliI +1.4 9.2 flagellum-specific ATP synthase FliI (TIGR) compare
DVU0312 fliG +1.4 7.0 flagellar motor switch protein FliG (TIGR) compare
DVU2894 flrA +1.4 8.7 sigma-54 dependent transcriptional regulator (TIGR) compare
DVU0315 flgC +1.4 11.1 flagellar basal-body rod protein FlgC (TIGR) compare
DVU2045 +1.3 6.9 hypothetical protein (TIGR) compare
DVU0045 +1.3 4.8 flagellar biosynthesis protein, FliO, putative (TIGR) compare
DVU0313 fliF +1.3 8.3 flagellar M-ring protein FliF (TIGR) compare
DVU0314 fliE +1.3 6.6 flagellar basal body component FliE (TIGR) compare
DVU3233 flhB +1.3 9.9 flagellar biosynthetic protein FlhB (TIGR) compare
DVU1363 rfbD +1.3 8.0 dTDP-4-dehydrorhamnose reductase (TIGR) compare
DVU0044 fliP +1.2 6.6 flagellar biosynthetic protein fliP (TIGR) compare
DVU3232 flhA +1.2 9.4 flagellar biosynthetic protein FlhA (TIGR) compare
DVU3234 +1.2 4.3 flagellar biosynthetic protein FliR (TIGR) compare
DVU0046 fliN +1.2 6.9 flagellar motor switch protein FliN (TIGR) compare
DVU0318 +1.2 2.5 TPR domain protein (TIGR) compare
DVU0519 +1.2 10.6 flagellar hook-associated protein FlgK, putative (TIGR) compare
DVU3229 fliA +1.2 6.7 RNA polymerase sigma factor for flagellar operon FliA (TIGR) compare
DVU0516 flgI +1.2 8.3 flagellar P-ring protein FlgI (TIGR) compare
DVU0698 rfbC +1.1 8.9 dTDP-4-dehydrorhamnose 3,5-epimerase (TIGR) compare
DVU0910 fliM +1.1 6.4 flagellar motor switch protein FliM (TIGR) compare
DVU0307 +1.1 7.2 flagella basal body rod domain protein (TIGR) compare
DVU0512 flgF +1.1 6.6 flagellar basal-body rod protein, putative (TIGR) compare
DVU0793 +1.1 2.4 hypothetical protein (TIGR) compare
DVU0410 +1.1 6.6 hypothetical protein (TIGR) compare
DVU1251 +1.1 1.5 hypothetical protein (TIGR) compare
DVU0514 +1.1 7.1 FlgA family protein (TIGR) compare
DVU2896 +1.1 8.5 TPR domain protein (TIGR) compare
DVU1444 flgD +1.0 6.5 basal-body rod modification protein FlgD (TIGR) compare
DVU0515 flgH +1.0 4.8 flagellar L-ring protein FlgH (TIGR) compare
DVU1465 +1.0 7.6 CgeB family protein (TIGR) compare
DVU1063 flrC +1.0 6.6 transcriptional regulatory protein (TIGR) compare
DVU3227 +1.0 5.2 flagellar basal body-associated protein, putative (TIGR) compare
DVU1838 trxB-2 +1.0 3.6 thioredoxin reductase (TIGR) compare
DVU1862 +1.0 3.7 GGDEF domain protein (TIGR) compare
DVU_tRNA-Ala-5 tRNA-Ala +1.0 0.8 tRNA with anticodon CGC for Ala (VIMSS-AUTO) compare
DVU2473 +1.0 0.8 hypothetical protein (TIGR) compare
DVU0513 flgG +1.0 6.8 flagellar basal-body rod protein FlgG (TIGR) compare
DVU0047 +1.0 4.7 flagellar protein FliL (TIGR) compare
DVU2947 +0.9 3.2 anaerobic ribonucleoside-triphosphate reductase, putative (TIGR) compare
DVU1443 flgE +0.9 5.2 flagellar hook protein FlgE (TIGR) compare
DVU2300 +0.9 1.2 hypothetical protein (TIGR) compare
DVUA0114 +0.9 2.7 hypothetical protein (TIGR) compare
DVU0520 +0.9 6.6 flagellar hook-associated protein FlgL, putative (TIGR) compare
DVU0863 +0.9 6.8 flagellar hook-associated protein 2, putative (TIGR) compare
DVU1777 cynT +0.9 1.0 carbonic anhydrase (TIGR) compare
DVU0459 +0.9 0.6 hypothetical protein (TIGR) compare
DVU3387 +0.9 5.5 hypothetical protein (TIGR) compare
DVU_tRNA-Thr-1 tRNA-Thr +0.9 0.5 tRNA with anticodon GGT for Thr (VIMSS-AUTO) compare
DVU0295 +0.9 7.3 amine oxidase, flavin-containing (TIGR) compare
DVU1445 +0.9 6.1 flagellar hook-length control domain protein (TIGR) compare
DVU0858 +0.9 6.6 lipoprotein, putative (TIGR) compare
DVU1682 +0.9 2.6 GAF domain protein (TIGR) compare
DVU2444 flaB3 +0.8 5.0 flagellin (TIGR) compare
DVU3287 +0.8 6.5 glycosyl transferase, group 2 family protein (TIGR) compare
DVU0518 +0.8 3.6 hypothetical protein (TIGR) compare
DVU1632 +0.8 3.6 PTS system, IIA component (TIGR) compare
DVU0409 +0.8 1.7 hypothetical protein (TIGR) compare
DVU2703 +0.8 0.7 hypothetical protein (TIGR) compare
DVU2865 +0.8 0.9 lipoprotein, putative (TIGR) compare
DVU0913 +0.8 2.7 conserved hypothetical protein (TIGR) compare
DVU0196 +0.7 1.0 hypothetical protein (TIGR) compare
DVU0912 +0.7 2.3 conserved domain protein (TIGR) compare
DVU2609 +0.7 3.5 chemotaxis MotB protein, putative (TIGR) compare
DVU2191 +0.7 2.8 hypothetical protein (TIGR) compare
DVU0702 +0.7 2.0 cytochrome c family protein (TIGR) compare
DVU3329 +0.7 1.8 hypothetical protein (TIGR) compare
DVU2362 thiE-2 +0.7 1.7 thiamine-phosphate pyrophosphorylase (TIGR) compare
DVU1038 hisA +0.7 1.4 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (TIGR) compare
DVU1726 +0.7 1.1 hypothetical protein (TIGR) compare
DORF8192 +0.7 1.3 SEED: FIG00606834: hypothetical protein compare
DVU2608 motA-3 +0.7 4.8 chemotaxis protein MotA (TIGR) compare
DVU0136 +0.7 3.0 hypothetical protein (TIGR) compare
DVU2871 +0.7 2.0 minor capsid protein C (TIGR) compare
DVU1676 secG +0.7 1.2 preprotein translocase, SecG subunit (TIGR) compare
DORF12455 +0.7 0.7 SEED: helix-turn-helix protein, CopG family compare
DVU0135 +0.7 3.5 conserved hypothetical protein (TIGR) compare
DVU2748 cobM +0.7 3.3 precorrin-4 C11-methyltransferase (TIGR) compare
DVU0842 +0.7 2.1 hypothetical protein (TIGR) compare
DVU0522 yviF +0.7 3.1 conserved hypothetical protein (TIGR) compare
DVU3109 +0.7 1.9 iron-sulfur cluster-binding protein (TIGR) compare
DVU1039 +0.7 1.9 lipoprotein, putative (TIGR) compare
DVU0316 flgB +0.6 1.2 flagellar basal-body rod protein FlgB (TIGR) compare
DVU1446 +0.6 4.7 heptosyltransferase family protein (TIGR) compare
DVU2657 +0.6 1.3 6-pyruvoyl tetrahydrobiopterin synthase, putative (TIGR) compare
DVU2566 lysA-2 +0.6 1.7 diaminopimelate decarboxylase (TIGR) compare
DVU2669 +0.6 1.6 conserved domain protein (TIGR) compare
DVU1407 +0.6 2.1 radical SAM domain protein (TIGR) compare
DVU2323 +0.6 1.5 hypothetical protein (TIGR) compare
DVUA0081 +0.6 1.1 glycosyl transferase, group 1/2 family protein (TIGR) compare
DVU1828 gidA +0.6 2.2 glucose inhibited division protein A (TIGR) compare
DVU0862 +0.6 3.2 flagellar protein FliS/hypothetical protein, fusion (TIGR) compare
DVU1237 glnP +0.6 1.3 amino acid ABC transporter, permease protein, His/Glu/Gln/Arg/opine family (TIGR) compare
DVU2510 +0.6 0.4 penicillin-binding protein (TIGR) compare
DVU1863 +0.6 2.5 flagellar synthesis regulator FleN, putative (TIGR) compare
DVU1174 +0.6 1.1 hypothetical protein (TIGR) compare
DORF10286 +0.6 2.7 no description compare
DORF13021 +0.6 0.7 no description compare
DVU0376 +0.6 0.8 hypothetical protein (TIGR) compare
DVU0063 +0.6 1.1 transcriptional regulator, MarR family (TIGR) compare
DVU2903 pcnB2 +0.6 3.1 HD domain protein (TIGR) compare
DVU0556 +0.6 0.3 ISDvu3, transposase OrfA (TIGR) compare
DVU0682 +0.6 2.2 DNA-binding protein, putative (TIGR) compare
DVU2289 b2488 +0.5 0.4 hydrogenase, CooX subunit, putative (TIGR) compare
DVU2167 +0.5 2.4 hypothetical protein (TIGR) compare
DVU0200 +0.5 1.0 major head protein (TIGR) compare
DVU2999 +0.5 1.9 methionyl-tRNA formyltransferase, putative (TIGR) compare
DVU1875 +0.5 1.1 dafA protein (TIGR) compare
DVU2203 +0.5 1.2 endoribonuclease, L-PSP family (TIGR) compare
DVU1403 cobO +0.5 2.5 cob(I)alamin adenosyltransferase (TIGR) compare
DVU1908 pdxJ +0.5 0.9 pyridoxal phosphate biosynthetic protein PdxJ (TIGR) compare
DVU2750 cbiD +0.5 3.1 cobalamin biosynthesis protein CbiD (TIGR) compare
DVU0097 potB +0.5 2.2 polyamine ABC transporter, permease protein (TIGR) compare
DVU2855 +0.5 0.9 tail/DNA circulation protein, putative (TIGR) compare
DVU2257 +0.5 2.3 hypothetical protein (TIGR) compare
DVU2877 +0.5 3.0 hypothetical protein (TIGR) compare
DVU1447 +0.5 3.2 CgeB family protein (TIGR) compare
DVU1629 yfiA +0.5 3.4 ribosomal subunit interface protein (TIGR) compare
DVU0470 trpB-2 +0.5 1.4 tryptophan synthase, beta subunit (TIGR) compare
DVU2115 +0.5 1.0 hypothetical protein (TIGR) compare
DVU0280 wbaZ-2 +0.5 1.4 glycosyl transferase, group 1 family protein (TIGR) compare
DVU2606 +0.5 1.0 hypothetical protein (TIGR) compare
DVU0202 +0.5 2.8 holin (TIGR) compare
DVU2211 +0.5 3.9 hypothetical protein (TIGR) compare
DVU0898 +0.5 2.4 conserved hypothetical protein (TIGR) compare
DVU2766 +0.5 1.8 hypothetical protein (TIGR) compare
DVU2400 +0.5 1.9 hydrogenase, putative (TIGR) compare
DVU2169 +0.5 1.6 conserved hypothetical protein (TIGR) compare
DVU0193 +0.5 1.7 hypothetical protein (TIGR) compare
DORF768 +0.5 1.3 no description compare
DVU3225 +0.5 1.8 hypothetical protein (TIGR) compare
DVU2345 +0.5 1.3 hypothetical protein (TIGR) compare
DVU2112 +0.5 1.5 hypothetical protein (TIGR) compare
DVU2251 +0.5 1.9 DNA-binding protein (TIGR) compare
DVU2180 +0.5 1.6 hypothetical protein (TIGR) compare
DVU2946 +0.5 1.2 hypothetical protein (TIGR) compare
DVU0978 +0.5 2.7 ABC transporter, periplasmic substrate-binding protein, putative (TIGR) compare
DVU0302 +0.5 2.2 chemotaxis protein CheX, putative (TIGR) compare
DVU1464 +0.5 3.7 heptosyltransferase family protein (TIGR) compare
DVU2578 +0.5 2.1 response regulator (TIGR) compare
DVU2847 +0.5 1.8 hypothetical protein (TIGR) compare
DVU0464 +0.4 1.6 prephenate and/or arogenate dehydrogenase (from data) compare
DORF807 +0.4 0.9 no description compare
DVU3360 parB +0.4 2.7 ParB family protein (TIGR) compare
DVU0486 +0.4 1.7 hypothetical protein (TIGR) compare
DVU2650 +0.4 1.0 hypothetical protein (TIGR) compare
DVU3260 +0.4 1.6 hypothetical protein (TIGR) compare
DVU0816 cobQ +0.4 3.1 cobyric acid synthase CobQ (TIGR) compare
DVU2166 +0.4 1.4 holin (TIGR) compare
DVU2846 +0.4 1.1 hypothetical protein (TIGR) compare
DVU0909 +0.4 2.1 hypothetical protein (TIGR) compare
DVU0014 infA-1 +0.4 1.1 translation initiation factor IF-1 (TIGR) compare
DVU1441 flaB1 +0.4 2.4 flagellin (TIGR) compare
DVU3348 +0.4 0.4 pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit, putative (TIGR) compare
DORF4170 +0.4 1.0 no description compare
DVU0754 +0.4 0.9 hypothetical protein (TIGR) compare
DVU1737 +0.4 2.5 conserved hypothetical protein (TIGR) compare
DVU3309 +0.4 1.2 endo/excinuclease amino terminal domain protein (TIGR) compare
DVU0039 +0.4 2.6 C4-type zinc finger protein, DksA/TraR family (TIGR) compare
DVU1280 +0.4 1.6 conserved hypothetical protein TIGR00159 (TIGR) compare
DVU0033 +0.4 1.4 isochorismatase family protein (TIGR) compare
DVU2829 +0.4 1.3 hypothetical protein (TIGR) compare
DVU2402 hdrA +0.4 2.3 heterodisulfide reductase, A subunit (TIGR) compare
DVU1192 acyP +0.4 1.0 acylphosphatase (TIGR) compare
DVU1589 +0.4 2.0 hypothetical protein (TIGR) compare
DVU2774 +0.4 1.4 CBS domain protein/ACT domain protein (TIGR) compare
DVU1449 +0.4 2.3 anti-anti-sigma factor, putative (TIGR) compare
DVU2404 hdrC +0.4 1.7 heterodisulfide reductase, C subunit (TIGR) compare
DVU2350 gid +0.4 2.5 gid protein (TIGR) compare
DVU1023 +0.4 1.4 rhomboid family protein (TIGR) compare
DVU2399 +0.4 2.6 hydrogenase, putative (TIGR) compare
DVU2863 +0.4 0.4 hypothetical protein (TIGR) compare
DVU3177 +0.4 2.6 hypothetical protein (TIGR) compare
DVU0452 +0.4 2.4 hypothetical protein (TIGR) compare
DVU0198 +0.4 1.9 minor capsid protein C, degenerate (TIGR) compare
DVU3339.1 kdpF +0.4 1.5 potassium-transporting ATPase, KdpF subunit (TIGR) compare
DVU1222 +0.4 1.3 hypothetical protein (TIGR) compare
DVU2577 +0.4 1.7 DNA-binding response regulator, LuxR family (TIGR) compare
DVU2553 nifU-3 +0.4 1.0 NifU family protein (TIGR) compare
DVU0471 trpA +0.4 1.8 tryptophan synthase, alpha subunit (TIGR) compare
DVU0661 +0.4 1.6 dihydrouridine synthase family protein (TIGR) compare
DVUA0053 +0.4 1.6 conserved hypothetical protein (TIGR) compare
DVU2878 +0.4 1.1 adenine specific DNA methyltransferase, putative (TIGR) compare
DVU0566 +0.4 1.4 GAF domain protein (TIGR) compare
DVU0703 lepA +0.4 0.7 GTP-binding protein LepA (TIGR) compare
DVU1395 +0.4 0.9 C4-type zinc finger protein, DksA/TraR family (TIGR) compare
DVU3299 +0.4 1.2 membrane protein, putative (TIGR) compare
DVU1736 +0.4 2.3 hypothetical protein (TIGR) compare
DVU0436 +0.4 0.5 transcriptional regulator, TetR family (TIGR) compare
DVU0509 +0.4 0.3 conserved hypothetical protein (TIGR) compare
DVU1129 +0.4 1.4 conserved hypothetical protein (TIGR) compare
DVU0727 +0.4 1.8 conserved hypothetical protein (TIGR) compare
DVU3214 +0.4 2.6 phosphoenolpyruvate synthase-related protein (TIGR) compare
DVU2539 +0.4 0.4 hypothetical protein (TIGR) compare
DVU1268 +0.4 1.1 hypothetical protein (TIGR) compare
DVU1934 phnE +0.4 2.2 phosphonate ABC transporter, permease protein (TIGR) compare
DVU1068 +0.4 1.3 branched-chain amino acid ABC transporter, permease protein (TIGR) compare
DVU2160 +0.4 2.9 hypothetical protein (TIGR) compare


Specific Phenotypes

None in this experiment

For Desulfovibrio vulgaris Hildenborough JW710 in fermentative growth experiments

For fermentative growth Sodium pyruvate across organisms