Experiment set9IT057 for Sinorhizobium meliloti 1021

Compare to:

D-Ribose carbon source

200 most important genes:

  gene name fitness t score description  
SMc02123 -6.6 -3.8 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
SMc01494 -6.6 -11.3 phosphoserine phosphatase compare
SMc01726 -6.6 -6.4 acetylglutamate kinase compare
SMc00236 -6.4 -6.3 Indole-3-glycerol phosphate synthase compare
SMa1635 -6.2 -2.5 hypothetical protein compare
SMc00614 -6.1 -7.2 phosphoribosylglycinamide formyltransferase compare
SMc01054 -6.0 -5.7 required for sulfate utilization, putative electron source for sulfite reductase CysI (from data) compare
SMc02766 -5.9 -17.4 tryptophan synthase subunit beta compare
SMc00494 -5.8 -2.3 phosphoribosylformylglycinamidine synthase subunit PurS compare
SMc01843 -5.7 -12.3 5,10-methylenetetrahydrofolate reductase compare
SMc04045 -5.6 -9.3 dihydroxy-acid dehydratase compare
SMc00640 -5.6 -8.5 phosphoserine aminotransferase compare
SMc00918 -5.3 -9.6 ATP phosphoribosyltransferase regulatory subunit compare
SMc02899 -5.3 -13.7 prephenate dehydratase compare
SMc00495 -5.2 -6.2 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
SMc03112 -5.2 -18.2 B12-dependent methionine synthase compare
SMc03797 -5.2 -11.6 homoserine O-succinyltransferase compare
SMc03823 -5.2 -13.4 isopropylmalate isomerase large subunit compare
SMc01431 -5.1 -14.1 acetolactate synthase 3 catalytic subunit compare
SMc03979 -5.1 -3.5 glyceraldehyde-3-phosphate dehydrogenase compare
SMc04028 -5.0 -19.3 glutamate synthase compare
SMc00554 -4.9 -8.1 amidophosphoribosyltransferase compare
SMc00092 -4.9 -12.8 phosphoadenosine phosphosulfate reductase compare
SMc02767 -4.8 -10.5 N-(5'-phosphoribosyl)anthranilate isomerase compare
SMc02717 -4.8 -15.6 2-isopropylmalate synthase compare
SMc04405 -4.8 -6.9 3-isopropylmalate dehydrogenase compare
SMc00488 -4.7 -17.1 phosphoribosylformylglycinamidine synthase II compare
SMc00235 -4.7 -8.9 anthranilate phosphoribosyltransferase compare
SMc00615 -4.6 -12.0 phosphoribosylaminoimidazole synthetase compare
SMc03895 -4.6 -16.9 pyruvate carboxylase compare
SMc02725 -4.6 -13.6 anthranilate synthase compare
SMc02765 -4.6 -10.8 tryptophan synthase subunit alpha compare
SMc04088 -4.6 -11.7 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
SMc00917 -4.6 -6.2 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
SMc04001 -4.5 -1.8 phosphoribosylaminoimidazole carboxylase catalytic subunit protein compare
SMc00131 -4.5 -14.0 transcriptional regulator compare
SMc00090 -4.4 -11.6 sulfate adenylyltransferase compare
SMc02569 -4.4 -5.0 imidazole glycerol phosphate synthase subunit HisF compare
SMc02124 -4.4 -15.3 nitrite reductase compare
SMc02245 -4.4 -6.6 dihydroorotate dehydrogenase 2 compare
SMc03776 -4.4 -4.2 gamma-glutamyl kinase compare
SMc00091 -4.3 -12.0 sulfate adenylyltransferase compare
SMc04002 -4.3 -7.1 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
SMc00412 -4.3 -4.1 orotidine 5'-phosphate decarboxylase compare
SMc02572 -4.2 -5.3 imidazole glycerol phosphate synthase subunit HisH compare
SMc04026 -4.2 -5.9 glutamate synthase compare
SMc01004 -4.2 -8.5 phosphoribosyl-AMP cyclohydrolase compare
SMc00993 -4.2 -12.5 phosphoribosylamine--glycine ligase compare
SMc00493 -4.1 -8.3 phosphoribosylformylglycinamidine synthase I compare
SMc00293 -4.0 -11.5 homoserine dehydrogenase compare
SMc00711 -4.0 -5.4 cyclohexadienyl dehydrogenase compare
SMc02570 -4.0 -6.7 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
SMc03795 -3.9 -2.1 isopropylmalate isomerase small subunit compare
SMc03070 -3.8 -5.8 glucose-6-phosphate 1-dehydrogenase compare
SMc02217 -3.7 -7.4 O-succinylhomoserine sulfhydrylase compare
SMc03777 -3.6 -8.3 gamma-glutamyl phosphate reductase compare
SMc02755 -3.6 -6.0 S-adenosyl-L-homocysteine hydrolase compare
SMc01801 -3.5 -3.2 N-acetylglutamylphosphate reductase (EC 1.2.1.38) (from data) compare
SMc02172 -3.4 -11.5 transcriptional regulator compare
SMc01103 -3.4 -5.9 Ribokinase (EC 2.7.1.15) (from data) conserved
SMc01360 -3.4 -2.3 aspartate carbamoyltransferase catalytic subunit compare
SMc01881 -3.4 -2.3 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
SM_b21177 -3.4 -10.2 phosphate uptake ABC transporter ATP-binding protein compare
SMc02165 -3.3 -7.8 orotate phosphoribosyltransferase compare
SMc02166 -3.2 -8.9 dihydroorotase compare
SMc04346 -3.2 -5.1 ketol-acid reductoisomerase compare
SMc02246 -3.2 -1.2 hypothetical protein compare
SM_b21176 -3.2 -4.9 phosphate uptake ABC transporter substrate-binding protein precursor compare
SMc01430 -3.1 -5.8 acetolactate synthase 3 regulatory subunit compare
SMc02307 -3.1 -8.1 histidinol dehydrogenase compare
SMc02707 -3.1 -6.1 hypothetical protein compare
SMc03229 -3.0 -2.7 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
SMc03981 -2.9 -6.0 phosphoglycerate kinase compare
SM_b21175 -2.9 -5.4 phosphate uptake ABC transporter permease compare
SMc00017 -2.8 -2.2 homoserine kinase compare
SMc01053 -2.8 -5.1 siroheme synthase compare
SMc04005 -2.7 -6.6 pyruvate kinase compare
SMc01770 -2.6 -2.3 serine hydroxymethyltransferase compare
SM_b21174 -2.6 -5.1 phosphate uptake ABC transporter permease compare
SMc01361 -2.6 -1.8 dihydroorotase compare
SMc00641 -2.5 -3.5 D-3-phosphoglycerate dehydrogenase compare
SMc02858 -2.5 -1.0 chaperone protein DnaJ compare
SMc00294 -2.5 -11.1 aminotransferase compare
SMc02640 -2.4 -4.7 UDP-glucuronic acid epimerase compare
SMc02137 -2.3 -3.5 ornithine carbamoyltransferase compare
SMc00982 -2.3 -6.2 dioxygenase compare
SMc00876 -2.2 -3.0 ATP-binding MRP protein compare
SMc01880 -2.0 -1.4 pantoate--beta-alanine ligase compare
SMc03978 -2.0 -1.4 transketolase compare
SMc02641 -2.0 -2.2 UDP-glucose 6-dehydrogenase compare
SMc00334 -1.9 -1.2 cytidylate kinase compare
SMc01124 -1.9 -6.8 PII uridylyl-transferase compare
SMc00295 -1.8 -1.4 hypothetical protein compare
SMc02138 -1.8 -2.9 acetylornithine transaminase compare
SM_b20387 -1.8 -1.9 transcriptional regulator compare
SMa5033 -1.8 -1.5 hypothetical protein compare
SMc01622 -1.7 -5.5 oxidoreductase compare
SMc00404 -1.7 -1.4 hypothetical protein compare
SMc02574 -1.7 -3.6 imidazoleglycerol-phosphate dehydratase compare
SMa0846 -1.7 -1.7 transposase, fragment compare
SMc01028 -1.7 -10.0 phosphopyruvate hydratase compare
SMc01206 -1.6 -1.3 queuine tRNA-ribosyltransferase compare
SMc01505 -1.6 -1.9 hypothetical protein compare
SMc01578 -1.5 -8.2 aspartate aminotransferase compare
SMc01220 -1.5 -3.5 lipopolysaccharide core biosynthesis glycosyl transferase compare
SMc02812 -1.5 -2.5 hypothetical protein compare
SMc02434 -1.4 -3.0 hypothetical protein compare
SMc03100 -1.4 -0.9 hypothetical protein compare
SM_b20540 -1.4 -1.4 hypothetical protein compare
SMc00450 -1.4 -1.3 protoheme IX farnesyltransferase compare
SMc03924 -1.4 -7.6 glycogen synthase compare
SMc00511 -1.3 -2.6 D-ribulose-5-phosphate 3-epimerase compare
SMc03763 -1.3 -0.9 cytosine-specific methyltransferase compare
SMc00010 -1.3 -1.2 cytochrome C oxidase polypeptide I transmembrane protein compare
SMc01842 -1.3 -1.4 methyltransferase transcription regulator protein compare
SMc02978 -1.3 -4.3 hypothetical protein compare
SMc02232 -1.3 -2.2 hypothetical protein compare
SMc00286 -1.3 -1.8 hemolysin-type calcium-binding protein compare
SMc02778 -1.2 -1.3 hydroxyacid aldolase compare
SMc00414 -1.2 -6.6 hypothetical protein compare
SMc01568 -1.2 -1.1 hypothetical protein compare
SM_b20994 -1.2 -2.6 hypothetical protein compare
SMc00580 -1.2 -2.0 4-hydroxythreonine-4-phosphate dehydrogenase compare
SMc00012 -1.2 -1.2 cytochrome C oxidase assembly protein compare
SMc00073 -1.2 -1.2 hypothetical protein compare
SMc01368 -1.2 -4.2 transport transmembrane protein compare
SMc00815 -1.1 -0.7 inosine 5'-monophosphate dehydrogenase compare
SMc03068 -1.1 -5.1 phosphogluconate dehydratase compare
SMc02713 -1.1 -1.7 RNA polymerase sigma-E factor (sigma-24) protein compare
SMc02058 -1.1 -1.6 YAJC protein compare
SMc02838 -1.1 -4.3 phosphoglyceromutase compare
SMc02451 -1.1 -1.3 hypothetical protein compare
SMc04000 -1.0 -0.8 hypothetical protein compare
SMc00914 -1.0 -1.9 oxidoreductase compare
SMc02844 -1.0 -1.5 transcriptional regulator compare
SMc02112 -1.0 -5.0 hypothetical protein compare
SMc02753 -1.0 -0.7 PTS system transporter subunit IIA compare
SMa1053 -1.0 -1.4 hypothetical protein compare
SMc04220 -1.0 -1.3 transcriptional regulator compare
SM_b20948 -1.0 -1.0 glucosyltransferase compare
SMc00189 -1.0 -2.6 cytochrome C1 protein compare
SMc01440 -1.0 -2.8 hydrolase serine protease transmembrane protein compare
SMa1442 -1.0 -3.9 GntR family transcriptional regulator compare
SMc02234 -0.9 -1.2 hypothetical protein compare
SMc01441 -0.9 -2.7 membrane bound protease compare
SMc01845 -0.9 -1.2 transglycosylase transmembrane protein compare
SMc00981 -0.9 -3.9 ferredoxin protein compare
SMc00461 -0.9 -1.2 deoxyuridine 5'-triphosphate nucleotidohydrolase compare
SMc00557 -0.9 -3.3 alanine racemase compare
SMa0450 -0.9 -1.6 hypothetical protein compare
SMc02055 -0.9 -1.3 phytoene synthase compare
SMc04391 -0.9 -1.6 3-ketoacyl-ACP reductase compare
SM_b20909 -0.9 -1.7 hypothetical protein compare
SMc00361 -0.9 -2.3 hypothetical protein compare
SMc04042 -0.9 -3.2 monophosphatase compare
SMc00329 -0.9 -2.6 iron response regulator protein compare
SM_b20026 -0.9 -1.7 hypothetical protein compare
SMc02758 -0.9 -2.9 nucleotidyl transferase compare
SMc04454 -0.9 -3.2 ABC transporter ATP-binding protein compare
SMa0905 -0.9 -1.1 hypothetical protein compare
SMc02385 -0.8 -1.2 hypothetical protein compare
SMc00760 -0.8 -2.0 recombinase A compare
SMc02564 -0.8 -1.3 LysM domain/BON superfamily protein compare
SMa1430 -0.8 -2.3 Dehydrogenase, Zn-dependent compare
SMa0964 -0.8 -2.7 hypothetical protein compare
SMc04174 -0.8 -1.0 signal peptide protein compare
SMc02576 -0.8 -1.2 acetyltransferase compare
SMc01709 -0.8 -1.3 signal peptide protein compare
SM_b21467 -0.8 -2.2 hypothetical protein compare
SMc02046 -0.8 -1.4 hypothetical protein compare
SMc00565 -0.8 -1.0 50S ribosomal protein L9 compare
SMc00013 -0.8 -0.9 cytochrome C oxidase subunit III transmembrane protein compare
SMc00726 -0.8 -0.5 thiol:disulfide interchange redox-active center transmembrane protein compare
SMc04224 -0.8 -0.9 hypothetical protein compare
SMc02048 -0.8 -3.6 glycine cleavage system protein H compare
SM_b21111 -0.8 -3.0 oxidoreductase, RED superfamily protein compare
SMc00067 -0.8 -2.9 outer-membranne lipoprotein compare
SMc01724 -0.8 -1.9 hypothetical protein compare
SM_b21400 -0.8 -1.6 hypothetical protein compare
SM_b20055 -0.7 -1.0 transcriptional regulator compare
SMc03128 -0.7 -1.8 ABC transporter permease compare
SMc00496 -0.7 -0.8 hypothetical protein compare
SMc00556 -0.7 -1.9 DNA repair protein RadA compare
SMc02170 -0.7 -3.9 ABC transporter permease compare
SMc03826 -0.7 -0.5 argininosuccinate synthase compare
SM_b20616 -0.7 -1.6 thiamine biosynthesis oxidoreductase compare
SMc00821 -0.7 -1.2 hypothetical protein compare
SMc01222 -0.7 -3.5 lipopolysaccharide core biosynthesis glycosyl transferase compare
SMa1017 -0.7 -1.5 hypothetical protein compare
SMc01579 -0.7 -0.9 hypothetical protein compare
SMc02407 -0.7 -3.0 hypothetical protein compare
SMc02171 -0.7 -1.9 periplasmic binding ABC transporter protein compare
SM_b21395 -0.7 -1.6 hypothetical protein compare
SMc03175 -0.7 -1.8 nucleoside hydrolase compare
SM_b21133 -0.7 -4.4 sulfate ABC transporter substrate-binding protein compare
SMa1002 -0.7 -1.0 hypothetical protein compare
SMc04024 -0.7 -2.8 membrane-bound lytic murein transglycosylase compare
SMc00025 -0.7 -3.7 pyruvate phosphate dikinase compare
SMc02229 -0.7 -3.9 acyl-CoA dehydrogenase compare
SMc01984 -0.7 -2.1 cytochrome-C oxidase transmembrane protein compare


Specific Phenotypes

For 1 genes in this experiment

For carbon source D-Ribose in Sinorhizobium meliloti 1021

For carbon source D-Ribose across organisms