Experiment set9IT057 for Desulfovibrio vulgaris Hildenborough JW710

Compare to:

Pyruvate (fermenting) with Na2S as sulfur source + 0.1% Yeast Extract

200 most detrimental genes:

  gene name fitness t score description  
DVU2867 +2.0 3.7 holin (TIGR) compare
DVU0043 fliQ +1.6 10.3 flagellar biosynthetic protein FliQ (TIGR) compare
DVU1363 rfbD +1.5 10.3 dTDP-4-dehydrorhamnose reductase (TIGR) compare
DVU0311 +1.4 9.5 flagellar assembly protein FliH, putative (TIGR) compare
DVU0314 fliE +1.4 8.0 flagellar basal body component FliE (TIGR) compare
DVU2045 +1.4 7.0 hypothetical protein (TIGR) compare
DVU2894 flrA +1.3 9.6 sigma-54 dependent transcriptional regulator (TIGR) compare
DVU0315 flgC +1.3 8.8 flagellar basal-body rod protein FlgC (TIGR) compare
DVU0312 fliG +1.3 7.5 flagellar motor switch protein FliG (TIGR) compare
DVU0044 fliP +1.3 7.1 flagellar biosynthetic protein fliP (TIGR) compare
DVU0842 +1.3 2.5 hypothetical protein (TIGR) compare
DVU0310 fliI +1.3 9.6 flagellum-specific ATP synthase FliI (TIGR) compare
DVU0045 +1.2 4.3 flagellar biosynthesis protein, FliO, putative (TIGR) compare
DVU0793 +1.2 7.8 hypothetical protein (TIGR) compare
DVU3232 flhA +1.2 8.3 flagellar biosynthetic protein FlhA (TIGR) compare
DVU0516 flgI +1.2 7.9 flagellar P-ring protein FlgI (TIGR) compare
DVU0313 fliF +1.2 7.3 flagellar M-ring protein FliF (TIGR) compare
DVU3233 flhB +1.2 8.5 flagellar biosynthetic protein FlhB (TIGR) compare
DVU0698 rfbC +1.2 7.1 dTDP-4-dehydrorhamnose 3,5-epimerase (TIGR) compare
DVU3229 fliA +1.2 8.3 RNA polymerase sigma factor for flagellar operon FliA (TIGR) compare
DVU0046 fliN +1.2 6.1 flagellar motor switch protein FliN (TIGR) compare
DVU1029 hisC +1.2 2.1 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
DVU0910 fliM +1.1 7.1 flagellar motor switch protein FliM (TIGR) compare
DVU0519 +1.1 9.8 flagellar hook-associated protein FlgK, putative (TIGR) compare
DVU1251 +1.1 1.5 hypothetical protein (TIGR) compare
DVU1444 flgD +1.1 6.5 basal-body rod modification protein FlgD (TIGR) compare
DVU0512 flgF +1.1 7.6 flagellar basal-body rod protein, putative (TIGR) compare
DVU0316 flgB +1.1 3.4 flagellar basal-body rod protein FlgB (TIGR) compare
DVU0410 +1.0 5.6 hypothetical protein (TIGR) compare
DVU1465 +1.0 7.4 CgeB family protein (TIGR) compare
DVU0514 +1.0 6.4 FlgA family protein (TIGR) compare
DVU0515 flgH +1.0 5.6 flagellar L-ring protein FlgH (TIGR) compare
DVU0307 +1.0 6.9 flagella basal body rod domain protein (TIGR) compare
DVU1063 flrC +1.0 7.5 transcriptional regulatory protein (TIGR) compare
DVU0513 flgG +1.0 8.8 flagellar basal-body rod protein FlgG (TIGR) compare
DVU1632 +1.0 4.1 PTS system, IIA component (TIGR) compare
DVU0863 +1.0 8.4 flagellar hook-associated protein 2, putative (TIGR) compare
DVU3234 +1.0 3.9 flagellar biosynthetic protein FliR (TIGR) compare
DVU2896 +1.0 7.3 TPR domain protein (TIGR) compare
DVU0522 yviF +1.0 5.4 conserved hypothetical protein (TIGR) compare
DVU1429 +1.0 1.2 GTP-binding protein (TIGR) compare
DVU2444 flaB3 +1.0 6.4 flagellin (TIGR) compare
DVU0047 +0.9 5.1 flagellar protein FliL (TIGR) compare
DVU3227 +0.9 5.6 flagellar basal body-associated protein, putative (TIGR) compare
DVU1862 +0.9 3.8 GGDEF domain protein (TIGR) compare
DVU0912 +0.9 3.4 conserved domain protein (TIGR) compare
DVU1838 trxB-2 +0.9 3.2 thioredoxin reductase (TIGR) compare
DVU2609 +0.9 7.1 chemotaxis MotB protein, putative (TIGR) compare
DVU0858 +0.9 6.3 lipoprotein, putative (TIGR) compare
DVU0295 +0.9 7.0 amine oxidase, flavin-containing (TIGR) compare
DVU1443 flgE +0.9 4.6 flagellar hook protein FlgE (TIGR) compare
DVU0518 +0.8 3.3 hypothetical protein (TIGR) compare
DVU1445 +0.8 7.2 flagellar hook-length control domain protein (TIGR) compare
DVU3289 +0.8 2.2 hypothetical protein (TIGR) compare
DVU0198 +0.8 2.9 minor capsid protein C, degenerate (TIGR) compare
DVU1040 hisB +0.8 1.1 imidazoleglycerol-phosphate dehydratase (TIGR) compare
DVU0520 +0.8 5.8 flagellar hook-associated protein FlgL, putative (TIGR) compare
DVU1609 dapB +0.8 3.7 dihydrodipicolinate reductase (TIGR) compare
DVU1446 +0.8 5.0 heptosyltransferase family protein (TIGR) compare
DVU2669 +0.8 2.2 conserved domain protein (TIGR) compare
DVU3329 +0.8 1.8 hypothetical protein (TIGR) compare
DVU3287 +0.8 6.2 glycosyl transferase, group 2 family protein (TIGR) compare
DVU0965 +0.8 0.9 hypothetical protein (TIGR) compare
DVU3387 +0.8 5.4 hypothetical protein (TIGR) compare
DORF12455 +0.8 0.9 SEED: helix-turn-helix protein, CopG family compare
DVU2608 motA-3 +0.8 4.8 chemotaxis protein MotA (TIGR) compare
DVU2947 +0.8 3.5 anaerobic ribonucleoside-triphosphate reductase, putative (TIGR) compare
DVU0409 +0.8 1.6 hypothetical protein (TIGR) compare
DVU2510 +0.7 0.5 penicillin-binding protein (TIGR) compare
DVU2200 +0.7 0.9 hypothetical protein (TIGR) compare
DVU0862 +0.7 3.5 flagellar protein FliS/hypothetical protein, fusion (TIGR) compare
DVU1682 +0.7 2.3 GAF domain protein (TIGR) compare
DVU3348 +0.7 0.9 pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit, putative (TIGR) compare
DVU2903 pcnB2 +0.7 4.5 HD domain protein (TIGR) compare
DVU0913 +0.7 2.1 conserved hypothetical protein (TIGR) compare
DORF43335 +0.7 1.0 no description compare
DVU1449 +0.7 4.1 anti-anti-sigma factor, putative (TIGR) compare
DVU1944 oorD +0.7 0.8 pyruvate ferredoxin oxidoreductase, iron-sulfur binding subunit, putative (TIGR) compare
DVU2167 +0.7 2.8 hypothetical protein (TIGR) compare
DVU2578 +0.7 4.1 response regulator (TIGR) compare
DVU1039 +0.7 1.7 lipoprotein, putative (TIGR) compare
DVU0509 +0.6 0.6 conserved hypothetical protein (TIGR) compare
DVU1875 +0.6 1.1 dafA protein (TIGR) compare
DVUA0081 +0.6 0.8 glycosyl transferase, group 1/2 family protein (TIGR) compare
DVU1464 +0.6 4.8 heptosyltransferase family protein (TIGR) compare
DVU2659 +0.6 1.3 exsB protein (TIGR) compare
DVU0301 +0.6 0.7 hypothetical protein (TIGR) compare
DVU0951 moeA-2 +0.6 2.6 molybdopterin biosynthesis MoeA protein, putative (TIGR) compare
DVU2606 +0.6 1.6 hypothetical protein (TIGR) compare
DVU2112 +0.6 2.2 hypothetical protein (TIGR) compare
DVU2362 thiE-2 +0.6 1.7 thiamine-phosphate pyrophosphorylase (TIGR) compare
DORF24435 +0.6 0.9 SEED: Sll1863 protein compare
DVU2703 +0.6 0.4 hypothetical protein (TIGR) compare
DORF13021 +0.5 0.7 no description compare
DVU3260 +0.5 1.3 hypothetical protein (TIGR) compare
DVU1863 +0.5 2.4 flagellar synthesis regulator FleN, putative (TIGR) compare
DVU1395 +0.5 0.8 C4-type zinc finger protein, DksA/TraR family (TIGR) compare
DVU0135 +0.5 2.9 conserved hypothetical protein (TIGR) compare
DVU2566 lysA-2 +0.5 1.3 diaminopimelate decarboxylase (TIGR) compare
DVU3299 +0.5 1.6 membrane protein, putative (TIGR) compare
DVU3360 parB +0.5 2.8 ParB family protein (TIGR) compare
DVU2300 +0.5 0.6 hypothetical protein (TIGR) compare
DVU1447 +0.5 2.9 CgeB family protein (TIGR) compare
DVU0202 +0.5 2.3 holin (TIGR) compare
DVU2577 +0.5 1.9 DNA-binding response regulator, LuxR family (TIGR) compare
DVU0898 +0.5 2.8 conserved hypothetical protein (TIGR) compare
DVU2345 +0.5 1.7 hypothetical protein (TIGR) compare
DVU2081 +0.5 0.9 hypothetical protein (TIGR) compare
DVU0764 hup-2 +0.5 1.2 DNA-binding protein HU (TIGR) compare
DVU2203 +0.5 1.1 endoribonuclease, L-PSP family (TIGR) compare
DVU1076 +0.5 1.2 conserved hypothetical protein TIGR00278 (TIGR) compare
DVU2323 +0.5 1.4 hypothetical protein (TIGR) compare
DVU0411 +0.5 3.3 heptosyltransferase family protein (TIGR) compare
DVU2850 +0.5 0.8 tail protein, putative (TIGR) compare
DVU1726 +0.5 0.7 hypothetical protein (TIGR) compare
DVU_tRNA-Thr-1 tRNA-Thr +0.5 0.3 tRNA with anticodon GGT for Thr (VIMSS-AUTO) compare
DVU2871 +0.5 1.8 minor capsid protein C (TIGR) compare
DVU2750 cbiD +0.5 2.8 cobalamin biosynthesis protein CbiD (TIGR) compare
DVU2332 proC +0.5 1.0 pyrroline-5-carboxylate reductase (EC 1.5.1.2) (from data) compare
DVU2877 +0.5 2.3 hypothetical protein (TIGR) compare
DVUA0146 +0.5 1.3 hypothetical protein (TIGR) compare
DVU0303 +0.5 2.1 hypothetical protein (TIGR) compare
DVU2044 +0.5 0.6 hypothetical protein (TIGR) compare
DORF7327 +0.4 1.1 no description compare
DVU1275 +0.4 3.1 hypothetical protein (TIGR) compare
DVU1631 +0.4 2.2 conserved hypothetical protein (TIGR) compare
DVU1735 +0.4 1.5 hypothetical protein (TIGR) compare
DORF8571 +0.4 0.8 SEED: FIG00603598: hypothetical protein compare
DVU2999 +0.4 2.0 methionyl-tRNA formyltransferase, putative (TIGR) compare
DVU1629 yfiA +0.4 1.7 ribosomal subunit interface protein (TIGR) compare
DVU2211 +0.4 3.2 hypothetical protein (TIGR) compare
DVU2128 +0.4 1.7 hypothetical protein (TIGR) compare
DVU2938 +0.4 2.1 conserved hypothetical protein (TIGR) compare
DVU2169 +0.4 1.3 conserved hypothetical protein (TIGR) compare
DORF43366 +0.4 1.2 no description compare
DVU2990 moeA +0.4 3.2 molybdopterin biosynthesis MoeA protein (TIGR) compare
DVU2400 +0.4 2.0 hydrogenase, putative (TIGR) compare
DVU1961 cheW-3 +0.4 1.0 chemotaxis protein CheW (TIGR) compare
DVU1338 +0.4 2.4 conserved hypothetical protein (TIGR) compare
DVU2331 +0.4 1.7 Smr family protein (TIGR) compare
DVU2160 +0.4 1.5 hypothetical protein (TIGR) compare
DVU0232 +0.4 0.4 hypothetical protein (TIGR) compare
DVU0909 +0.4 1.8 hypothetical protein (TIGR) compare
DVU2132 +0.4 1.4 hypothetical protein (TIGR) compare
DVU2662 +0.4 1.8 conserved hypothetical protein (TIGR) compare
DVU1589 +0.4 2.0 hypothetical protein (TIGR) compare
DVU2847 +0.4 1.5 hypothetical protein (TIGR) compare
DVU1943 +0.4 1.1 hypothetical protein (TIGR) compare
DVU1441 flaB1 +0.4 1.9 flagellin (TIGR) compare
DVU0024 +0.4 0.5 conserved hypothetical protein (TIGR) compare
DVU2310 +0.4 1.7 metallo-beta-lactamase family protein (TIGR) compare
DVU2060 +0.4 0.9 hypothetical protein (TIGR) compare
DVU2712 +0.4 1.0 hypothetical protein (TIGR) compare
DVU_tRNA-Ala-5 tRNA-Ala +0.4 0.3 tRNA with anticodon CGC for Ala (VIMSS-AUTO) compare
DVU1135 +0.4 0.9 conserved domain protein (TIGR) compare
DVU1115 +0.4 1.9 conserved hypothetical protein (TIGR) compare
DVU0677 +0.4 2.2 transglycosylase domain protein (TIGR) compare
DVU1068 +0.4 1.4 branched-chain amino acid ABC transporter, permease protein (TIGR) compare
DVU1916 +0.4 0.8 hypothetical protein (TIGR) compare
DVU0196 +0.4 0.4 hypothetical protein (TIGR) compare
DORF26313 +0.4 1.6 no description compare
DVUA0053 +0.4 1.6 conserved hypothetical protein (TIGR) compare
DVU1752 +0.4 1.4 hypothetical protein (TIGR) compare
DVU1593 cheY-1 +0.4 1.3 chemotaxis protein CheY (TIGR) compare
DVU1221 +0.4 0.9 hypothetical protein (TIGR) compare
DVU0464 +0.3 1.3 prephenate and/or arogenate dehydrogenase (from data) compare
DVU0859 +0.3 1.6 hypothetical protein (TIGR) compare
DVU3022 +0.3 0.2 sensory box histidine kinase/response regulator (TIGR) compare
DVU3049 +0.3 1.5 hemerythrin family protein (TIGR) compare
DVU0193 +0.3 1.4 hypothetical protein (TIGR) compare
DVU2859 +0.3 2.0 tail sheath protein, putative (TIGR) compare
DVU0715 livG +0.3 1.4 branched-chain amino acid ABC transporter, ATP binding protein (TIGR) compare
DVU0534 hmcC +0.3 1.8 HmcC, 43.2 kd protein in hmc operon (voordouw) compare
DORF27863 +0.3 2.1 no description compare
DVU1685 +0.3 1.9 conserved hypothetical protein TIGR00046 (TIGR) compare
DVU2051 +0.3 0.9 hypothetical protein (TIGR) compare
DVU1222 +0.3 0.9 hypothetical protein (TIGR) compare
DVU0136 +0.3 1.0 hypothetical protein (TIGR) compare
DVU1571 rho +0.3 0.3 transcription termination factor Rho (TIGR) compare
DVU1551 +0.3 2.2 HD domain protein (TIGR) compare
DVU0911 truA +0.3 1.4 tRNA pseudouridine synthase A (TIGR) compare
DVU1708 +0.3 1.0 conserved hypothetical protein (TIGR) compare
DVU0682 +0.3 1.5 DNA-binding protein, putative (TIGR) compare
DORF8192 +0.3 0.4 SEED: FIG00606834: hypothetical protein compare
DVU1799 fusA-2 +0.3 2.5 translation elongation factor G (TIGR) compare
DVU2021 +0.3 0.9 hypothetical protein (TIGR) compare
DVU1264 +0.3 1.6 transglycosylase SLT domain protein (TIGR) compare
DVUA0121 +0.3 1.8 type III secretion system protein, YopQ family (TIGR) compare
DVU0416 +0.3 1.9 GGDEF domain protein (TIGR) compare
DVU0318 +0.3 0.5 TPR domain protein (TIGR) compare
DVU2600 +0.3 0.6 hypothetical protein (TIGR) compare
DVU3228 cheY-3 +0.3 0.9 chemotaxis protein CheY (TIGR) compare
DORF10632 +0.3 1.6 SEED: FIG00602944: hypothetical protein compare
DVU3318 +0.3 1.1 hypothetical protein (TIGR) compare
DVU2911 +0.3 1.7 hemolysin A (TIGR) compare
DORF831 +0.3 0.3 SEED: FIG00602593: hypothetical protein compare
DVU0206 +0.3 0.9 hypothetical protein (TIGR) compare
DVU2549 +0.3 1.7 hypothetical protein (TIGR) compare
DVU2170 +0.3 1.4 minor capsid protein C (TIGR) compare
DVUA0005 +0.3 1.7 universal stress protein family (TIGR) compare


Specific Phenotypes

None in this experiment

For Desulfovibrio vulgaris Hildenborough JW710 in fermentative growth experiments

For fermentative growth Sodium pyruvate across organisms