Experiment set9IT056 for Desulfovibrio vulgaris Hildenborough JW710

Compare to:

Pyruvate (fermenting) with Na2S as sulfur source + 0.1% Yeast Extract

200 most detrimental genes:

  gene name fitness t score description  
DVU2867 +1.6 2.7 holin (TIGR) compare
DVU1251 +1.5 5.4 hypothetical protein (TIGR) compare
DVU0043 fliQ +1.4 10.4 flagellar biosynthetic protein FliQ (TIGR) compare
DVU0311 +1.4 10.9 flagellar assembly protein FliH, putative (TIGR) compare
DVU2894 flrA +1.3 9.3 sigma-54 dependent transcriptional regulator (TIGR) compare
DVU0318 +1.3 5.5 TPR domain protein (TIGR) compare
DVU2045 +1.2 6.2 hypothetical protein (TIGR) compare
DVU0044 fliP +1.2 7.7 flagellar biosynthetic protein fliP (TIGR) compare
DVU0314 fliE +1.2 6.3 flagellar basal body component FliE (TIGR) compare
DVU0310 fliI +1.2 8.7 flagellum-specific ATP synthase FliI (TIGR) compare
DVU0312 fliG +1.2 6.5 flagellar motor switch protein FliG (TIGR) compare
DVU0315 flgC +1.2 9.2 flagellar basal-body rod protein FlgC (TIGR) compare
DVU0046 fliN +1.1 6.1 flagellar motor switch protein FliN (TIGR) compare
DVU1363 rfbD +1.1 8.0 dTDP-4-dehydrorhamnose reductase (TIGR) compare
DVU3232 flhA +1.1 8.1 flagellar biosynthetic protein FlhA (TIGR) compare
DVU0313 fliF +1.1 6.9 flagellar M-ring protein FliF (TIGR) compare
DVU3233 flhB +1.1 8.9 flagellar biosynthetic protein FlhB (TIGR) compare
DVU3229 fliA +1.1 5.3 RNA polymerase sigma factor for flagellar operon FliA (TIGR) compare
DVU0316 flgB +1.1 5.0 flagellar basal-body rod protein FlgB (TIGR) compare
DVU0512 flgF +1.1 7.1 flagellar basal-body rod protein, putative (TIGR) compare
DVU0307 +1.0 7.1 flagella basal body rod domain protein (TIGR) compare
DVU0514 +1.0 6.4 FlgA family protein (TIGR) compare
DVU0698 rfbC +1.0 8.2 dTDP-4-dehydrorhamnose 3,5-epimerase (TIGR) compare
DVU0519 +1.0 9.1 flagellar hook-associated protein FlgK, putative (TIGR) compare
DVU0793 +1.0 2.2 hypothetical protein (TIGR) compare
DVU3234 +1.0 3.5 flagellar biosynthetic protein FliR (TIGR) compare
DVU0045 +1.0 3.6 flagellar biosynthesis protein, FliO, putative (TIGR) compare
DVU1444 flgD +1.0 5.8 basal-body rod modification protein FlgD (TIGR) compare
DVU1063 flrC +1.0 6.9 transcriptional regulatory protein (TIGR) compare
DVU0515 flgH +1.0 5.1 flagellar L-ring protein FlgH (TIGR) compare
DVU0410 +1.0 5.9 hypothetical protein (TIGR) compare
DVU2300 +1.0 1.3 hypothetical protein (TIGR) compare
DVU2896 +1.0 7.5 TPR domain protein (TIGR) compare
DVU0912 +1.0 5.0 conserved domain protein (TIGR) compare
DVU0047 +1.0 5.3 flagellar protein FliL (TIGR) compare
DVU0863 +0.9 7.4 flagellar hook-associated protein 2, putative (TIGR) compare
DVU0516 flgI +0.9 5.4 flagellar P-ring protein FlgI (TIGR) compare
DVU1465 +0.9 6.5 CgeB family protein (TIGR) compare
DVU2200 +0.9 0.7 hypothetical protein (TIGR) compare
DVU1862 +0.9 4.0 GGDEF domain protein (TIGR) compare
DVU0910 fliM +0.9 5.6 flagellar motor switch protein FliM (TIGR) compare
DVU2198 +0.9 0.8 hypothetical protein (TIGR) compare
DVU0513 flgG +0.8 5.9 flagellar basal-body rod protein FlgG (TIGR) compare
DVU0522 yviF +0.8 5.7 conserved hypothetical protein (TIGR) compare
DORF12455 +0.8 1.3 SEED: helix-turn-helix protein, CopG family compare
DVU0295 +0.8 6.8 amine oxidase, flavin-containing (TIGR) compare
DVU2444 flaB3 +0.8 3.5 flagellin (TIGR) compare
DVU0796 hisD +0.8 1.9 histidinol dehydrogenase (TIGR) compare
DVU1443 flgE +0.8 4.6 flagellar hook protein FlgE (TIGR) compare
DVU0862 +0.8 4.0 flagellar protein FliS/hypothetical protein, fusion (TIGR) compare
DVU2903 pcnB2 +0.8 5.1 HD domain protein (TIGR) compare
DVU0520 +0.8 5.6 flagellar hook-associated protein FlgL, putative (TIGR) compare
DVU2203 +0.8 2.4 endoribonuclease, L-PSP family (TIGR) compare
DVU3387 +0.7 4.7 hypothetical protein (TIGR) compare
DVU0913 +0.7 2.7 conserved hypothetical protein (TIGR) compare
DVU2609 +0.7 4.3 chemotaxis MotB protein, putative (TIGR) compare
DVU1445 +0.7 5.2 flagellar hook-length control domain protein (TIGR) compare
DVU0518 +0.7 3.2 hypothetical protein (TIGR) compare
DVU0063 +0.7 1.4 transcriptional regulator, MarR family (TIGR) compare
DVU3227 +0.7 3.9 flagellar basal body-associated protein, putative (TIGR) compare
DVU1632 +0.7 3.1 PTS system, IIA component (TIGR) compare
DVU2289 b2488 +0.7 0.6 hydrogenase, CooX subunit, putative (TIGR) compare
DVU2703 +0.7 0.6 hypothetical protein (TIGR) compare
DVU0409 +0.7 2.1 hypothetical protein (TIGR) compare
DVU2947 +0.7 2.8 anaerobic ribonucleoside-triphosphate reductase, putative (TIGR) compare
DVU_tRNA-Ala-5 tRNA-Ala +0.7 0.5 tRNA with anticodon CGC for Ala (VIMSS-AUTO) compare
DVU2669 +0.6 1.7 conserved domain protein (TIGR) compare
DVU2608 motA-3 +0.6 3.9 chemotaxis protein MotA (TIGR) compare
DVU2871 +0.6 2.8 minor capsid protein C (TIGR) compare
DVU0376 +0.6 1.2 hypothetical protein (TIGR) compare
DVU2191 +0.6 2.4 hypothetical protein (TIGR) compare
DVU2915 +0.6 1.5 hypothetical protein (TIGR) compare
DVU0858 +0.6 3.6 lipoprotein, putative (TIGR) compare
DVU3329 +0.6 1.6 hypothetical protein (TIGR) compare
DVU1838 trxB-2 +0.6 1.6 thioredoxin reductase (TIGR) compare
DVU3287 +0.6 3.9 glycosyl transferase, group 2 family protein (TIGR) compare
DORF18707 +0.6 0.5 no description compare
DVUA0114 +0.6 1.5 hypothetical protein (TIGR) compare
DVU2091 thiE-1 +0.5 2.9 thiamine-phosphate pyrophosphorylase (TIGR) compare
DVU2112 +0.5 2.6 hypothetical protein (TIGR) compare
DVU1222 +0.5 2.3 hypothetical protein (TIGR) compare
DVU3134 glpK +0.5 2.4 glycerol kinase (TIGR) compare
DVU0493 +0.5 1.1 hypothetical protein (TIGR) compare
DORF8192 +0.5 1.1 SEED: FIG00606834: hypothetical protein compare
DVU2081 +0.5 1.0 hypothetical protein (TIGR) compare
DVU2877 +0.5 3.0 hypothetical protein (TIGR) compare
DVU0202 +0.5 2.0 holin (TIGR) compare
DVU1630 ptsN +0.5 0.7 PTS system, IIA component (TIGR) compare
DVU1631 +0.5 2.8 conserved hypothetical protein (TIGR) compare
DVU1464 +0.5 4.0 heptosyltransferase family protein (TIGR) compare
DVU3225 +0.5 1.9 hypothetical protein (TIGR) compare
DVU0088 +0.5 3.0 Sodium/pantothenate symporter (TIGR) compare
DVU1029 hisC +0.5 0.9 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
DVU2400 +0.5 2.6 hydrogenase, putative (TIGR) compare
DVU1682 +0.5 1.9 GAF domain protein (TIGR) compare
DVU0135 +0.5 2.6 conserved hypothetical protein (TIGR) compare
DVU1446 +0.5 3.5 heptosyltransferase family protein (TIGR) compare
DVU3260 +0.5 1.2 hypothetical protein (TIGR) compare
DVU1735 +0.5 2.1 hypothetical protein (TIGR) compare
DVU0603 +0.5 1.0 hypothetical protein (TIGR) compare
DVU0898 +0.5 2.6 conserved hypothetical protein (TIGR) compare
DORF41147 +0.5 0.6 no description compare
DVU1275 +0.5 2.9 hypothetical protein (TIGR) compare
DVU2750 cbiD +0.5 3.1 cobalamin biosynthesis protein CbiD (TIGR) compare
DVU2578 +0.5 3.4 response regulator (TIGR) compare
DVU0136 +0.5 1.7 hypothetical protein (TIGR) compare
DVU1441 flaB1 +0.5 2.1 flagellin (TIGR) compare
DORF13021 +0.5 0.5 no description compare
DVU1729 +0.5 1.9 killer protein, putative (TIGR) compare
DVU2169 +0.4 1.4 conserved hypothetical protein (TIGR) compare
DVU1040 hisB +0.4 0.6 imidazoleglycerol-phosphate dehydratase (TIGR) compare
DVU2774 +0.4 1.3 CBS domain protein/ACT domain protein (TIGR) compare
DORF10286 +0.4 1.5 no description compare
DVU1863 +0.4 1.7 flagellar synthesis regulator FleN, putative (TIGR) compare
DVU0897 +0.4 2.3 RNA modification enzyme, MiaB-family (TIGR) compare
DVU2310 +0.4 2.1 metallo-beta-lactamase family protein (TIGR) compare
DVU2847 +0.4 1.7 hypothetical protein (TIGR) compare
DVU1449 +0.4 2.7 anti-anti-sigma factor, putative (TIGR) compare
DVU1038 hisA +0.4 0.7 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (TIGR) compare
DVU0486 +0.4 1.9 hypothetical protein (TIGR) compare
DVU0057 +0.4 2.5 transcriptional regulator, TetR family (TIGR) compare
DVU2323 +0.4 1.5 hypothetical protein (TIGR) compare
DVU0223 +0.4 0.6 conserved hypothetical protein (TIGR) compare
DVU1039 +0.4 1.0 lipoprotein, putative (TIGR) compare
DVU1744 +0.4 1.4 DNA-binding protein (TIGR) compare
DVU0008 +0.4 0.3 hypothetical protein (TIGR) compare
DVU3189 +0.4 2.9 NOL1/NOP2/sun family protein (TIGR) compare
DVU1408 +0.4 2.4 hypothetical protein (TIGR) compare
DVU1137 +0.4 1.7 hypothetical protein (TIGR) compare
DVU0661 +0.4 1.8 dihydrouridine synthase family protein (TIGR) compare
DVU2399 +0.4 2.4 hydrogenase, putative (TIGR) compare
DVU3274 +0.4 1.3 hypothetical protein (TIGR) compare
DVU1447 +0.4 2.4 CgeB family protein (TIGR) compare
DVU1403 cobO +0.4 1.9 cob(I)alamin adenosyltransferase (TIGR) compare
DVU1129 +0.4 1.4 conserved hypothetical protein (TIGR) compare
DVU3129 +0.4 0.7 hypothetical protein (TIGR) compare
DVU2092 moeB +0.4 1.5 thiF family protein (TIGR) compare
DVU2211 +0.4 3.1 hypothetical protein (TIGR) compare
DVU1274 +0.4 2.2 hypothetical protein (TIGR) compare
DVU3393 +0.4 0.6 hypothetical protein (TIGR) compare
DVU2606 +0.4 0.8 hypothetical protein (TIGR) compare
DVU0198 +0.4 2.1 minor capsid protein C, degenerate (TIGR) compare
DVU0669 +0.4 1.1 hypothetical protein (TIGR) compare
DVUA0089 +0.4 0.3 hypothetical protein (TIGR) compare
DVU0859 +0.4 2.0 hypothetical protein (TIGR) compare
DVU2403 hdrB +0.4 2.4 heterodisulfide reductase, B subunit (TIGR) compare
DVU0703 lepA +0.4 0.6 GTP-binding protein LepA (TIGR) compare
DVU1726 +0.4 0.6 hypothetical protein (TIGR) compare
DVU0937 +0.4 1.8 hypothetical protein (TIGR) compare
DVU3177 +0.4 2.4 hypothetical protein (TIGR) compare
DVU1265 +0.4 2.8 hypothetical protein (TIGR) compare
DVU1916 +0.4 0.9 hypothetical protein (TIGR) compare
DVU1395 +0.4 0.9 C4-type zinc finger protein, DksA/TraR family (TIGR) compare
DORF20226 +0.4 1.1 no description compare
DVU0411 +0.4 2.4 heptosyltransferase family protein (TIGR) compare
DORF807 +0.4 0.7 no description compare
DVU2063 +0.4 0.9 conserved hypothetical protein (TIGR) compare
DVUA0043 +0.4 2.0 polysaccharide deacetylase family protein (TIGR) compare
DVU0193 +0.4 1.3 hypothetical protein (TIGR) compare
DVU0097 potB +0.4 1.0 polyamine ABC transporter, permease protein (TIGR) compare
DVU2350 gid +0.4 1.8 gid protein (TIGR) compare
DVU1944 oorD +0.4 0.9 pyruvate ferredoxin oxidoreductase, iron-sulfur binding subunit, putative (TIGR) compare
DVU0965 +0.4 0.3 hypothetical protein (TIGR) compare
DVU3133 glpF +0.3 0.6 glycerol uptake facilitator protein (TIGR) compare
DVU1264 +0.3 1.9 transglycosylase SLT domain protein (TIGR) compare
DVU1162 +0.3 0.7 hypothetical protein (TIGR) compare
DVU1369 +0.3 1.3 hypothetical protein (TIGR) compare
DVU1589 +0.3 2.3 hypothetical protein (TIGR) compare
DVU2180 +0.3 1.3 hypothetical protein (TIGR) compare
DVU0524 +0.3 1.9 hypothetical protein (TIGR) compare
DVU3153 +0.3 1.5 hypothetical protein (TIGR) compare
DVU0534 hmcC +0.3 1.8 HmcC, 43.2 kd protein in hmc operon (voordouw) compare
DVU1919 +0.3 1.5 hydrogenase expression/formation protein, putative (TIGR) compare
DVU1068 +0.3 1.5 branched-chain amino acid ABC transporter, permease protein (TIGR) compare
DVU2128 +0.3 1.2 hypothetical protein (TIGR) compare
DVU1875 +0.3 1.0 dafA protein (TIGR) compare
DVU3149 sppA +0.3 1.3 signal peptide peptidase SppA, 36K type (TIGR) compare
DVU1972 +0.3 0.9 hypothetical protein (TIGR) compare
DVU2498 +0.3 1.3 hypothetical protein (TIGR) compare
DVU2160 +0.3 1.7 hypothetical protein (TIGR) compare
DVU1420 +0.3 0.5 Hpt domain protein (TIGR) compare
DVU2855 +0.3 0.6 tail/DNA circulation protein, putative (TIGR) compare
DVU2016 +0.3 1.0 GGDEF domain protein (TIGR) compare
DVU2391 +0.3 0.2 hypothetical protein (TIGR) compare
DVU1268 +0.3 1.5 hypothetical protein (TIGR) compare
DVU0013 +0.3 1.6 sensory box histidine kinase (TIGR) compare
DVU2829 +0.3 1.2 hypothetical protein (TIGR) compare
DVU0764 hup-2 +0.3 0.9 DNA-binding protein HU (TIGR) compare
DVU1536 mltC +0.3 1.7 transglycosylase, SLT family (TIGR) compare
DVU1629 yfiA +0.3 1.5 ribosomal subunit interface protein (TIGR) compare
DVU1736 +0.3 1.9 hypothetical protein (TIGR) compare
DVU2944 +0.3 2.0 ErfK/YbiS/YcfS/YnhG family protein (TIGR) compare
DVU2809 +0.3 1.4 cytochrome c3 (TIGR) compare
DVU3360 parB +0.3 1.7 ParB family protein (TIGR) compare
DVU1153 +0.3 1.0 hypothetical protein (TIGR) compare
DVU2044 +0.3 0.5 hypothetical protein (TIGR) compare
DVU1377 ilvN-2 +0.3 0.2 acetolactate synthase, small subunit (TIGR) compare
DVU0452 +0.3 2.1 hypothetical protein (TIGR) compare
DVU1070 rbsA +0.3 1.1 branched chain amino acid ABC transporter, ATP-binding protein (TIGR) compare
DVU1609 dapB +0.3 0.8 dihydrodipicolinate reductase (TIGR) compare


Specific Phenotypes

None in this experiment

For Desulfovibrio vulgaris Hildenborough JW710 in fermentative growth experiments

For fermentative growth Sodium pyruvate across organisms