Experiment set9IT055 for Sinorhizobium meliloti 1021

Compare to:

L-Arabinose carbon source

200 most important genes:

  gene name fitness t score description  
SMc02572 -9.1 -6.2 imidazole glycerol phosphate synthase subunit HisH compare
SMc02838 -8.5 -5.9 phosphoglyceromutase compare
SMc02766 -8.1 -12.4 tryptophan synthase subunit beta compare
SMc00236 -8.0 -5.5 Indole-3-glycerol phosphate synthase compare
SMc02899 -7.8 -5.4 prephenate dehydratase compare
SMc00614 -7.4 -5.1 phosphoribosylglycinamide formyltransferase compare
SMc02767 -7.4 -7.2 N-(5'-phosphoribosyl)anthranilate isomerase compare
SMc01494 -7.4 -11.2 phosphoserine phosphatase compare
SMc01054 -7.1 -4.9 required for sulfate utilization, putative electron source for sulfite reductase CysI (from data) compare
SMc00917 -6.9 -4.8 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
SMc02569 -6.9 -4.8 imidazole glycerol phosphate synthase subunit HisF compare
SMc01843 -6.9 -9.5 5,10-methylenetetrahydrofolate reductase compare
SMc00918 -6.8 -4.7 ATP phosphoribosyltransferase regulatory subunit compare
SMc01028 -6.8 -9.3 phosphopyruvate hydratase compare
SMc00235 -6.8 -6.6 anthranilate phosphoribosyltransferase compare
SMc04405 -6.6 -9.0 3-isopropylmalate dehydrogenase compare
SMc01431 -6.5 -7.7 acetolactate synthase 3 catalytic subunit compare
SMc00993 -6.4 -7.7 phosphoribosylamine--glycine ligase compare
SMc02574 -6.4 -4.4 imidazoleglycerol-phosphate dehydratase compare
SMc00711 -6.4 -4.4 cyclohexadienyl dehydrogenase compare
SMc04026 -6.4 -7.6 glutamate synthase compare
SMc04045 -6.3 -7.6 dihydroxy-acid dehydratase compare
SMc02765 -6.3 -14.0 tryptophan synthase subunit alpha compare
SMc00615 -6.3 -14.8 phosphoribosylaminoimidazole synthetase compare
SMc03823 -6.3 -11.9 isopropylmalate isomerase large subunit compare
SMc04028 -6.3 -10.5 glutamate synthase compare
SMc01726 -6.2 -4.3 acetylglutamate kinase compare
SMc02717 -6.2 -11.2 2-isopropylmalate synthase compare
SMc01004 -6.2 -10.4 phosphoribosyl-AMP cyclohydrolase compare
SMc00495 -6.2 -5.8 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
SMc00640 -6.2 -6.0 phosphoserine aminotransferase compare
SMa1635 -6.2 -2.5 hypothetical protein compare
SMc00488 -6.1 -17.6 phosphoribosylformylglycinamidine synthase II compare
SMc00131 -6.1 -15.7 transcriptional regulator compare
SMc03112 -6.0 -15.1 B12-dependent methionine synthase compare
SMc00493 -6.0 -5.9 phosphoribosylformylglycinamidine synthase I compare
SMc03776 -6.0 -4.1 gamma-glutamyl kinase compare
SMc03797 -5.9 -12.5 homoserine O-succinyltransferase compare
SMc02725 -5.8 -11.2 anthranilate synthase compare
SMc02707 -5.7 -5.3 hypothetical protein compare
SM_b20892 -5.7 -8.9 2-dehydro-3-deoxy-L-arabinonate dehydratase (EC 4.2.1.43) (from data) conserved
SMc02245 -5.6 -4.7 dihydroorotate dehydrogenase 2 compare
SMc00293 -5.6 -14.4 homoserine dehydrogenase compare
SMc00091 -5.5 -10.6 sulfate adenylyltransferase compare
SMc00090 -5.4 -10.2 sulfate adenylyltransferase compare
SMc02562 -5.4 -8.2 phosphoenolpyruvate carboxykinase compare
SMc02123 -5.3 -4.8 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
SMc02137 -5.3 -3.6 ornithine carbamoyltransferase compare
SMc00554 -5.3 -7.2 amidophosphoribosyltransferase compare
SMc04002 -5.2 -4.7 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
SMc02217 -5.2 -7.1 O-succinylhomoserine sulfhydrylase compare
SMc00588 -5.2 -3.5 L-arabinose 1-dehydrogenase; D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) (from data) compare
SMc03979 -5.1 -3.5 glyceraldehyde-3-phosphate dehydrogenase compare
SMc04088 -5.1 -10.8 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
SMc02307 -5.0 -3.5 histidinol dehydrogenase compare
SMc02570 -5.0 -5.9 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
SMc00092 -5.0 -10.3 phosphoadenosine phosphosulfate reductase compare
SMc03777 -4.8 -7.4 gamma-glutamyl phosphate reductase compare
SM_b21174 -4.8 -5.7 phosphate uptake ABC transporter permease compare
SM_b21177 -4.7 -8.5 phosphate uptake ABC transporter ATP-binding protein compare
SM_b20890 -4.7 -9.3 L-arabonate dehydratase (EC 4.2.1.25) (from data) conserved
SMc02124 -4.7 -13.9 nitrite reductase compare
SMc03981 -4.7 -4.1 phosphoglycerate kinase compare
SMc00494 -4.6 -2.6 phosphoribosylformylglycinamidine synthase subunit PurS compare
SMc04001 -4.6 -1.8 phosphoribosylaminoimidazole carboxylase catalytic subunit protein compare
SMc02138 -4.4 -5.8 acetylornithine transaminase compare
SMc00294 -4.4 -11.8 aminotransferase compare
SMc00412 -4.3 -4.2 orotidine 5'-phosphate decarboxylase compare
SM_b21176 -4.2 -5.8 phosphate uptake ABC transporter substrate-binding protein precursor compare
SMc02165 -4.1 -6.2 orotate phosphoribosyltransferase compare
SMc02166 -3.9 -10.2 dihydroorotase compare
SMc03795 -3.9 -2.2 isopropylmalate isomerase small subunit compare
SMc01801 -3.9 -2.5 N-acetylglutamylphosphate reductase (EC 1.2.1.38) (from data) compare
SMc02755 -3.8 -5.7 S-adenosyl-L-homocysteine hydrolase compare
SMc01770 -3.7 -1.7 serine hydroxymethyltransferase compare
SMc01441 -3.6 -7.3 membrane bound protease compare
SM_b21175 -3.6 -3.8 phosphate uptake ABC transporter permease compare
SMc00017 -3.6 -1.9 homoserine kinase compare
SM_b20895 -3.5 -9.7 sugar uptake ABC transporter substrate-binding protein precursor conserved
SMc00641 -3.5 -5.5 D-3-phosphoglycerate dehydrogenase compare
SMc03069 -3.5 -3.3 6-phosphogluconolactonase compare
SMc01053 -3.4 -5.9 siroheme synthase compare
SM_b20891 -3.3 -5.0 Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) (from data) compare
SMc01206 -3.2 -1.7 queuine tRNA-ribosyltransferase compare
SMc02246 -3.2 -1.3 hypothetical protein compare
SMc01430 -3.2 -4.3 acetolactate synthase 3 regulatory subunit compare
SMc01578 -3.1 -11.6 aspartate aminotransferase compare
SMc00726 -3.0 -1.2 thiol:disulfide interchange redox-active center transmembrane protein compare
SMc03229 -3.0 -2.5 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
SMc04346 -3.0 -3.6 ketol-acid reductoisomerase compare
SMc00876 -2.9 -3.4 ATP-binding MRP protein compare
SMc02641 -2.9 -2.0 UDP-glucose 6-dehydrogenase compare
SM_b20894 -2.8 -6.9 L-arabinose ABC transporter, ATPase component (from data) compare
SMc01361 -2.7 -1.9 dihydroorotase compare
SMc01220 -2.7 -5.8 lipopolysaccharide core biosynthesis glycosyl transferase compare
SM_b20893 -2.7 -9.4 sugar uptake ABC transporter permease conserved
SMc01360 -2.6 -3.0 aspartate carbamoyltransferase catalytic subunit compare
SMc02975 -2.5 -6.6 phosphoenolpyruvate carboxykinase regulator transcription regulator protein compare
SMc02983 -2.5 -7.2 ornithine, DAP, or arginine decarboxylase compare
SMc00427 -2.4 -1.6 peptide chain release factor RF-3 protein compare
SMc03100 -2.4 -1.7 hypothetical protein compare
SMc01852 -2.3 -9.6 pyrophosphate--fructose-6-phosphate 1-phosphotransferase compare
SMc01440 -2.2 -4.4 hydrolase serine protease transmembrane protein compare
SMc01207 -2.2 -2.5 S-adenosylmethionine--tRNA ribosyltransferase-isomerase compare
SMc00580 -2.2 -2.5 4-hydroxythreonine-4-phosphate dehydrogenase compare
SMc01880 -2.2 -1.5 pantoate--beta-alanine ligase compare
SMc02640 -2.2 -4.9 UDP-glucuronic acid epimerase compare
SMc01881 -2.1 -2.8 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
SMc03978 -2.1 -1.4 transketolase compare
SMc00013 -2.0 -2.3 cytochrome C oxidase subunit III transmembrane protein compare
SMc02659 -2.0 -4.7 GTP pyrophosphokinase (ATP:GTP 3'-pyrophosphotransferase) protein compare
SMa0882 -2.0 -2.1 hypothetical protein compare
SMc00334 -1.9 -1.3 cytidylate kinase compare
SMc02724 -1.9 -3.2 hypothetical protein compare
SMc00169 -1.9 -13.3 malic enzyme compare
SMc02980 -1.7 -1.8 hypothetical protein compare
SMc04330 -1.6 -1.9 trimethylamine methyltransferase compare
SMc00883 -1.6 -8.8 L-arabinolactonase/D-galactonolactonase (EC 3.1.1.15; EC 3.1.1.25) (from data) compare
SMc04348 -1.6 -1.5 transcriptional regulator compare
SMc01124 -1.6 -5.9 PII uridylyl-transferase compare
SMc00296 -1.6 -7.3 POLY3-hydroxybutyrate polymerase compare
SMc00010 -1.5 -1.4 cytochrome C oxidase polypeptide I transmembrane protein compare
SMc00450 -1.5 -1.4 protoheme IX farnesyltransferase compare
SMc02048 -1.5 -4.8 glycine cleavage system protein H compare
SMa1924 -1.5 -1.0 hypothetical protein compare
SMc02683 -1.5 -2.3 hypothetical protein compare
SMc02055 -1.4 -1.8 phytoene synthase compare
SMc00821 -1.4 -1.6 hypothetical protein compare
SMc02812 -1.4 -2.0 hypothetical protein compare
SMc00511 -1.4 -3.8 D-ribulose-5-phosphate 3-epimerase compare
SMc00414 -1.3 -7.4 hypothetical protein compare
SMc02280 -1.3 -1.4 hypothetical protein compare
SMc01041 -1.3 -1.8 NIFR3-like protein compare
SMc03279 -1.3 -2.4 transposase number 2 for insertion sequence ISRM28 compare
SMc02434 -1.3 -3.1 hypothetical protein compare
SMa1118 -1.2 -1.9 HspC2 heat shock protein compare
SMc01043 -1.2 -5.4 nitrogen assimilation regulatory protein compare
SMc01842 -1.2 -1.3 methyltransferase transcription regulator protein compare
SMc00815 -1.2 -0.7 inosine 5'-monophosphate dehydrogenase compare
SMc02144 -1.2 -2.1 phosphate ABC transporter permease compare
SMc04174 -1.2 -1.4 signal peptide protein compare
SMc02407 -1.2 -4.0 hypothetical protein compare
SMc00982 -1.2 -4.5 dioxygenase compare
SMa1017 -1.2 -1.7 hypothetical protein compare
SM_b20955 -1.2 -2.7 endo-beta-1,3-1,4-glycanase compare
SMc00882 -1.1 -2.2 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
SMc01368 -1.1 -3.4 transport transmembrane protein compare
SMc00355 -1.1 -2.8 hypothetical protein compare
SMc02753 -1.1 -0.7 PTS system transporter subunit IIA compare
SMc01091 -1.1 -2.0 hypothetical protein compare
SMa2289 -1.1 -1.3 hypothetical protein compare
SMc03993 -1.1 -3.1 hypothetical protein compare
SMc00569 -1.0 -1.7 hypothetical protein compare
SMc00914 -1.0 -1.9 oxidoreductase compare
SMc02047 -1.0 -3.4 glycine cleavage system aminomethyltransferase T compare
SMc02058 -1.0 -2.2 YAJC protein compare
SMc00349 -1.0 -3.9 GTP-binding protein LepA compare
SMc02484 -1.0 -2.4 amino acid efflux transmembrane protein compare
SMc01042 -1.0 -3.3 nitrogen regulation protein compare
SMc03980 -1.0 -2.5 hypothetical protein compare
SMc00067 -1.0 -4.8 outer-membranne lipoprotein compare
SMc04454 -1.0 -4.0 ABC transporter ATP-binding protein compare
SMc01651 -0.9 -2.7 transcriptional regulator compare
SMc03763 -0.9 -1.0 cytosine-specific methyltransferase compare
SMc00556 -0.9 -2.6 DNA repair protein RadA compare
SMc02978 -0.9 -2.6 hypothetical protein compare
SMc00565 -0.9 -1.2 50S ribosomal protein L9 compare
SMc00513 -0.9 -4.4 amino acid-binding periplasmic protein compare
SMc01939 -0.9 -1.3 urease subunit beta compare
SMc02049 -0.9 -7.3 glycine dehydrogenase compare
SMc00295 -0.9 -1.0 hypothetical protein compare
SMc00073 -0.9 -1.1 hypothetical protein compare
SMc02861 -0.9 -1.5 phosphate transporter compare
SMc02451 -0.9 -0.9 hypothetical protein compare
SMc01800 -0.9 -0.6 cytochrome C oxidase assembly transmembrane protein compare
SMc02850 -0.9 -1.2 DNA polymerase I compare
SMc02543 -0.9 -3.4 hypothetical protein compare
SMc00361 -0.9 -2.5 hypothetical protein compare
SMc02677 -0.9 -3.6 pyrroline-5-carboxylate reductase compare
SMc00760 -0.9 -2.6 recombinase A compare
SMc01222 -0.9 -3.9 lipopolysaccharide core biosynthesis glycosyl transferase compare
SMc02435 -0.9 -1.0 methyltransferase compare
SMc02695 -0.9 -2.8 GTP-dependent nucleic acid-binding protein EngD compare
SMc01026 -0.8 -1.8 hypothetical protein compare
SMc02833 -0.8 -0.8 penicillin-insensitive murein endopeptidase compare
SM_b21347 -0.8 -1.8 pectin degradation protein compare
SMc01454 -0.8 -5.3 hypothetical protein compare
SMc04003 -0.8 -1.1 50S ribosomal protein L36 compare
SMc04042 -0.8 -2.9 monophosphatase compare
SMc00981 -0.8 -3.1 ferredoxin protein compare
SMc01187 -0.8 -0.8 rare lipoprotein A compare
SMc02495 -0.8 -0.8 translaldolase compare
SMc01024 -0.8 -1.0 preprotein translocase subunit SecG compare
SMc02787 -0.8 -1.6 hypothetical protein compare
SM_b20948 -0.8 -1.1 glucosyltransferase compare
SMc01472 -0.8 -0.9 50S ribosomal protein L11 methyltransferase compare
SMc00329 -0.8 -2.5 iron response regulator protein compare
SMc02617 -0.8 -2.0 hypothetical protein compare
SMc02714 -0.8 -1.1 hypothetical protein compare
SMc02117 -0.8 -5.4 cystathionine beta-lyase compare


Specific Phenotypes

For 6 genes in this experiment

For carbon source L-Arabinose in Sinorhizobium meliloti 1021

For carbon source L-Arabinose across organisms