Experiment set9IT055 for Bifidobacterium breve UCC2003

diet=StandardDiet2; sample=FecalPellet; mouse16; day3

Group: mouse
Media: + diet=StandardDiet2; sample=FecalPellet
Culturing: Bifido_ML2
By: Anthony Shiver on 8/20/2020

Specific Phenotypes

For 6 genes in this experiment

For mouse diet=StandardDiet2; sample=FecalPellet in Bifidobacterium breve UCC2003

For mouse diet=StandardDiet2; sample=FecalPellet across organisms

SEED Subsystems

Subsystem	#Specific
Arginine and Ornithine Degradation	1
De Novo Pyrimidine Synthesis	1
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis	1
Glycerol and Glycerol-3-phosphate Uptake and Utilization	1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

• Pyrimidine metabolism
• Alanine and aspartate metabolism
• Glycerophospholipid metabolism
• Nitrogen metabolism

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway	#Steps	#Present	#Specific
L-glutamate degradation II	2	2	1
glycerophosphodiester degradation	2	1	1
phosphatidylcholine resynthesis via glycerophosphocholine	2	1	1
L-aspartate degradation II (aerobic)	3	2	1
L-aspartate degradation III (anaerobic)	3	2	1
superpathway of L-aspartate and L-asparagine biosynthesis	4	2	1
phospholipid remodeling (phosphatidylethanolamine, yeast)	4	2	1
glycerol and glycerophosphodiester degradation	4	1	1
UMP biosynthesis II	6	6	1
L-canavanine degradation II	6	1	1
anandamide biosynthesis I	12	2	1