Experiment set9IT054 for Pseudomonas fluorescens FW300-N2C3

Compare to:

P5ss-5 phage 10-1 dilution SM calcl2

200 most important genes:

  gene name fitness t score description  
AO356_14050 -4.3 -1.6 glutathione S-transferase compare
AO356_11410 -3.8 -2.0 hypothetical protein compare
AO356_13395 -3.8 -2.3 non-canonical purine NTP pyrophosphatase compare
AO356_29355 -3.8 -1.4 hypothetical protein compare
AO356_02860 -3.8 -2.9 histidine kinase compare
AO356_05080 -3.7 -1.4 peptide deformylase compare
AO356_11340 -3.7 -1.4 NADH-flavin reductase compare
AO356_17090 -3.6 -3.5 phospholipid-binding protein compare
AO356_15305 -3.6 -3.1 50S rRNA methyltransferase compare
AO356_16610 -3.6 -8.0 hypothetical protein compare
AO356_18780 -3.6 -1.9 carbon storage regulator compare
AO356_19835 -3.5 -1.8 histidine kinase compare
AO356_07385 -3.4 -1.2 tRNA-Thr compare
AO356_08670 -3.2 -2.2 N-acetylmuramoyl-L-alanine amidase compare
AO356_01940 -3.2 -2.4 hypothetical protein compare
AO356_05540 -3.2 -1.5 cold-shock protein compare
AO356_02460 -3.2 -1.9 hypothetical protein compare
AO356_21455 -3.1 -4.2 cell division protein compare
AO356_24485 -3.0 -2.1 SAM-dependent methyltransferase compare
AO356_09420 -2.9 -16.4 peptidase compare
AO356_07020 -2.9 -1.4 LPS export ABC transporter periplasmic protein LptC compare
AO356_00920 -2.8 -2.3 cold-shock protein compare
AO356_13380 -2.8 -4.2 tRNA (guanine-N7)-methyltransferase compare
AO356_06615 -2.7 -1.4 FeS assembly protein IscX compare
AO356_20520 -2.6 -2.4 oxidoreductase compare
AO356_00875 -2.6 -3.5 MerR family transcriptional regulator compare
AO356_02005 -2.6 -2.7 hypothetical protein compare
AO356_09795 -2.6 -1.3 imidazole glycerol phosphate synthase subunit HisF compare
AO356_20475 -2.5 -1.6 hypothetical protein compare
AO356_24245 -2.4 -2.9 siderophore-iron reductase FhuF compare
AO356_12995 -2.4 -6.4 cell division protein ZapA compare
AO356_10900 -2.4 -5.7 hypothetical protein compare
AO356_02205 -2.4 -2.3 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
AO356_15160 -2.4 -1.7 hypothetical protein compare
AO356_04355 -2.3 -3.0 MFS transporter compare
AO356_22955 -2.3 -2.2 ArsR family transcriptional regulator compare
AO356_15330 -2.3 -3.2 D-alanyl-D-alanine carboxypeptidase compare
AO356_09940 -2.3 -2.0 hypothetical protein compare
AO356_21465 -2.3 -3.4 amidophosphoribosyltransferase compare
AO356_04575 -2.3 -8.4 RNA polymerase subunit sigma compare
AO356_17105 -2.2 -5.2 hypothetical protein compare
AO356_10905 -2.2 -13.0 hypothetical protein compare
AO356_09765 -2.2 -1.5 sulfurtransferase compare
AO356_17020 -2.2 -2.9 cytochrome D ubiquinol oxidase subunit III compare
AO356_21220 -2.2 -2.1 peptide ABC transporter substrate-binding protein compare
AO356_07400 -2.2 -4.7 pseudouridine synthase compare
AO356_12735 -2.1 -1.5 diaminopimelate epimerase compare
AO356_25130 -2.0 -2.5 hypothetical protein compare
AO356_21515 -2.0 -1.0 antitoxin compare
AO356_24845 -2.0 -1.4 ATPase compare
AO356_26450 -2.0 -2.0 hypothetical protein compare
AO356_23980 -2.0 -2.0 HIT family hydrolase compare
AO356_25505 -1.9 -1.4 hypothetical protein compare
AO356_10895 -1.9 -3.8 Holliday junction resolvase compare
AO356_09775 -1.9 -7.3 peptidase M23 compare
AO356_30015 -1.9 -2.0 histidine kinase compare
AO356_27280 -1.9 -1.7 XRE family transcriptional regulator compare
AO356_12485 -1.9 -2.5 DNA-directed RNA polymerase subunit omega compare
AO356_02405 -1.9 -7.7 cytochrome C oxidase Cbb3 compare
AO356_21310 -1.8 -1.4 filamentous hemagglutinin compare
AO356_16735 -1.8 -4.2 D-erythro-7,8-dihydroneopterin triphosphate epimerase compare
AO356_14335 -1.8 -2.1 rRNA methyltransferase compare
AO356_05345 -1.8 -2.1 hypothetical protein compare
AO356_07160 -1.8 -2.4 4-carboxymuconolactone decarboxylase compare
AO356_18010 -1.8 -5.0 hypothetical protein compare
AO356_25865 -1.8 -1.3 peroxidase compare
AO356_00385 -1.8 -1.1 peptidylprolyl isomerase compare
AO356_15235 -1.8 -3.7 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
AO356_28695 -1.8 -1.9 IclR family transcriptional regulator compare
AO356_29100 -1.7 -1.9 epimerase compare
AO356_11990 -1.7 -6.8 DNA helicase II compare
AO356_06905 -1.7 -7.9 adhesin compare
AO356_11495 -1.7 -4.0 hypothetical protein compare
AO356_25165 -1.7 -2.8 protease compare
AO356_01530 -1.7 -3.1 arginine N-succinyltransferase compare
AO356_26815 -1.7 -3.1 short-chain dehydrogenase compare
AO356_29490 -1.7 -2.1 ArsR family transcriptional regulator compare
AO356_08235 -1.7 -5.5 histidine kinase compare
AO356_07830 -1.6 -4.4 cupin compare
AO356_27405 -1.6 -2.2 MarR family transcriptional regulator compare
AO356_01740 -1.6 -1.1 DNA-binding protein compare
AO356_23645 -1.6 -1.4 hypothetical protein compare
AO356_29710 -1.6 -2.8 xylose isomerase compare
AO356_16320 -1.6 -3.0 hypothetical protein compare
AO356_23675 -1.6 -2.3 hydroxyacid dehydrogenase compare
AO356_07210 -1.6 -1.5 histidine kinase compare
AO356_14380 -1.6 -2.4 transcriptional regulator compare
AO356_00605 -1.6 -3.1 TetR family transcriptional regulator compare
AO356_26210 -1.6 -1.1 histidine kinase compare
AO356_06005 -1.6 -2.9 zinc metallopeptidase RseP compare
AO356_12885 -1.6 -4.3 hypothetical protein compare
AO356_14820 -1.5 -1.1 Isochorismatase compare
AO356_13000 -1.5 -5.7 hypothetical protein compare
AO356_16060 -1.5 -2.8 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
AO356_21405 -1.5 -2.2 3-isopropylmalate dehydratase compare
AO356_06385 -1.5 -1.7 recombinase XerD compare
AO356_21020 -1.5 -2.6 hypothetical protein compare
AO356_10880 -1.5 -0.9 hypothetical protein compare
AO356_26910 -1.5 -1.7 hypothetical protein compare
AO356_09380 -1.5 -7.0 cell division protein compare
AO356_15925 -1.5 -2.2 ribosomal large subunit pseudouridine synthase D compare
AO356_02580 -1.5 -2.6 GntR family transcriptional regulator compare
AO356_14130 -1.5 -1.8 amidophosphoribosyltransferase compare
AO356_04975 -1.5 -6.9 RNA polymerase-associated protein RapA compare
AO356_02590 -1.5 -1.4 hypothetical protein compare
AO356_16260 -1.5 -4.3 ribosomal-protein-alanine acetyltransferase compare
AO356_01985 -1.5 -1.5 head completion/stabilization protein compare
AO356_15690 -1.5 -1.4 carbon starvation protein A compare
AO356_04560 -1.5 -1.0 serine peptidase compare
AO356_11465 -1.4 -3.4 DNA polymerase I compare
AO356_04460 -1.4 -1.1 sugar translocase compare
AO356_08875 -1.4 -1.0 toluene tolerance protein compare
AO356_06650 -1.4 -2.1 transcriptional regulator compare
AO356_04885 -1.4 -3.8 multidrug transporter compare
AO356_18000 -1.4 -0.9 FmdB family transcriptional regulator compare
AO356_02625 -1.4 -3.4 oxygen-regulated invasion protein OrgB compare
AO356_20125 -1.4 -4.2 23S rRNA pseudouridylate synthase compare
AO356_01965 -1.4 -2.7 terminase compare
AO356_18965 -1.4 -2.5 transcriptional regulator compare
AO356_10375 -1.4 -3.2 Cd(II)/Pb(II)-responsive transcriptional regulator compare
AO356_08275 -1.4 -1.8 precorrin isomerase compare
AO356_21195 -1.4 -3.4 DNA-binding protein compare
AO356_09290 -1.4 -2.7 LysR family transcriptional regulator compare
AO356_28170 -1.4 -2.3 hypothetical protein compare
AO356_08325 -1.4 -2.2 predicted copper homeostasis protein (from data) compare
AO356_15325 -1.4 -1.3 hypothetical protein compare
AO356_11490 -1.4 -4.7 zinc ABC transporter ATP-binding protein compare
AO356_24665 -1.4 -3.8 AAA family ATPase compare
AO356_26615 -1.4 -1.8 hypothetical protein compare
AO356_15295 -1.4 -3.0 nicotinate-nucleotide adenylyltransferase compare
AO356_18060 -1.4 -4.8 hypothetical protein compare
AO356_08315 -1.4 -1.4 hypothetical protein compare
AO356_07360 -1.3 -3.8 N-acetyl-anhydromuranmyl-L-alanine amidase compare
AO356_04880 -1.3 -6.9 multidrug transporter compare
AO356_27425 -1.3 -1.5 porin compare
AO356_12520 -1.3 -0.9 orotate phosphoribosyltransferase compare
AO356_05830 -1.3 -1.4 phage tail protein compare
AO356_19390 -1.3 -1.3 hypothetical protein compare
AO356_27200 -1.3 -3.3 hypothetical protein compare
AO356_00175 -1.3 -2.2 conjugal transfer protein compare
AO356_12800 -1.3 -5.1 heme biosynthesis protein HemY compare
AO356_13415 -1.3 -1.9 hypothetical protein compare
AO356_28685 -1.3 -2.0 betaine-aldehyde dehydrogenase compare
AO356_06450 -1.3 -4.3 tRNA (mo5U34)-methyltransferase compare
AO356_08160 -1.3 -1.3 translation initiation factor Sui1 compare
AO356_24880 -1.3 -1.8 ABC transporter substrate-binding protein compare
AO356_22095 -1.3 -2.5 cupin compare
AO356_20915 -1.3 -2.2 thiamine pyrophosphate-binding protein compare
AO356_17515 -1.2 -5.7 murein transglycosylase compare
AO356_24450 -1.2 -1.7 microcin ABC transporter ATP-binding protein compare
AO356_06580 -1.2 -1.2 GTP-binding protein compare
AO356_07090 -1.2 -1.3 hypothetical protein compare
AO356_12380 -1.2 -3.4 ATP-dependent DNA helicase RecG compare
AO356_29640 -1.2 -2.1 FAD-dependent oxidoreductase compare
AO356_14500 -1.2 -5.0 anhydro-N-acetylmuramic acid kinase compare
AO356_04525 -1.2 -2.4 hypothetical protein compare
AO356_02480 -1.2 -3.9 coproporphyrinogen III oxidase compare
AO356_09065 -1.2 -1.1 hypothetical protein compare
AO356_07495 -1.2 -0.8 molecular chaperone DnaJ compare
AO356_06105 -1.2 -0.8 cold-shock protein compare
AO356_06685 -1.2 -0.6 preprotein translocase subunit YajC compare
AO356_12795 -1.2 -3.7 heme biosynthesis operon protein HemX compare
AO356_18330 -1.2 -4.0 hypothetical protein compare
AO356_18970 -1.2 -4.3 histidine kinase compare
AO356_16155 -1.2 -2.9 hypothetical protein compare
AO356_01335 -1.2 -2.7 paraquat-inducible protein A compare
AO356_09835 -1.2 -3.2 iron transporter compare
AO356_07390 -1.2 -0.7 polyribonucleotide nucleotidyltransferase compare
AO356_06735 -1.2 -1.5 hypothetical protein compare
AO356_13345 -1.2 -1.2 cell division ATP-binding protein FtsE compare
AO356_30130 -1.2 -2.9 pyridine nucleotide-disulfide oxidoreductase compare
AO356_11985 -1.2 -3.5 hypothetical protein compare
AO356_20840 -1.2 -2.8 aminodeoxychorismate synthase component I compare
AO356_05760 -1.1 -1.3 phage tail protein compare
AO356_10910 -1.1 -3.7 tryptophan synthase subunit alpha compare
AO356_21435 -1.1 -2.0 pseudouridine synthase compare
AO356_01300 -1.1 -2.0 tyrosyl-trna synthetase compare
AO356_06695 -1.1 -3.4 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
AO356_05670 -1.1 -1.3 recombinase RecA compare
AO356_29130 -1.1 -2.4 MFS transporter compare
AO356_20215 -1.1 -3.5 radical SAM protein compare
AO356_06690 -1.1 -0.8 queuine tRNA-ribosyltransferase compare
AO356_18810 -1.1 -2.9 DNA-binding protein compare
AO356_13770 -1.1 -2.8 ATP-dependent RNA helicase compare
AO356_11670 -1.1 -2.2 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG compare
AO356_00615 -1.1 -1.8 choline ABC transporter ATP-binding protein compare
AO356_11480 -1.1 -3.9 ABC transporter substrate-binding protein compare
AO356_27875 -1.1 -2.1 ketosteroid isomerase compare
AO356_25995 -1.1 -1.7 acetylglucosaminylphosphatidylinositol deacetylase compare
AO356_17305 -1.1 -2.8 hemolysin D compare
AO356_08605 -1.1 -3.4 23S rRNA methyltransferase compare
AO356_13175 -1.1 -3.1 spermidine/putrescine ABC transporter permease compare
AO356_05750 -1.1 -2.2 phage tail protein compare
AO356_25555 -1.1 -2.0 transcriptional regulator compare
AO356_06890 -1.1 -1.3 cysteine methyltransferase compare
AO356_02025 -1.1 -1.8 hypothetical protein compare
AO356_21585 -1.1 -3.2 branched-chain amino acid transporter compare
AO356_02240 -1.0 -2.1 pilus assembly protein PilZ compare
AO356_12610 -1.0 -1.3 Fe-S oxidoreductase compare
AO356_06415 -1.0 -2.1 cytochrome C assembly protein compare


Specific Phenotypes

For 12 genes in this experiment

For phage P5ss-5_phage in Pseudomonas fluorescens FW300-N2C3

For phage P5ss-5_phage across organisms