Experiment set9IT053 for Desulfovibrio vulgaris Hildenborough JW710

Compare to:

Pyruvate (fermenting) with Na2S as sulfur source

200 most detrimental genes:

  gene name fitness t score description  
DVU1631 +1.9 12.8 conserved hypothetical protein (TIGR) compare
DVU2747 +1.7 13.5 hypothetical protein (TIGR) compare
DVU2867 +1.4 2.4 holin (TIGR) compare
DVU1571 rho +1.3 1.2 transcription termination factor Rho (TIGR) compare
DVU0802 +1.3 1.4 hypothetical protein (TIGR) compare
DVU0509 +1.2 1.5 conserved hypothetical protein (TIGR) compare
DVU1251 +1.1 5.9 hypothetical protein (TIGR) compare
DVU2659 +0.9 2.8 exsB protein (TIGR) compare
DVU2894 flrA +0.9 5.9 sigma-54 dependent transcriptional regulator (TIGR) compare
DVU1349 SelGGPS +0.9 1.7 geranylgeranyl diphosphate synthase (TIGR) compare
DVUA0070 +0.9 2.0 conserved domain protein (TIGR) compare
DVU2203 +0.8 3.6 endoribonuclease, L-PSP family (TIGR) compare
DVU0044 fliP +0.8 6.6 flagellar biosynthetic protein fliP (TIGR) compare
DVU1862 +0.8 3.7 GGDEF domain protein (TIGR) compare
DVU2045 +0.8 4.0 hypothetical protein (TIGR) compare
DVU0315 flgC +0.8 6.0 flagellar basal-body rod protein FlgC (TIGR) compare
DVU1174 +0.8 1.8 hypothetical protein (TIGR) compare
DVU0043 fliQ +0.8 4.8 flagellar biosynthetic protein FliQ (TIGR) compare
DVU0024 +0.8 1.2 conserved hypothetical protein (TIGR) compare
DVU2510 +0.8 0.6 penicillin-binding protein (TIGR) compare
DVU1521 +0.8 0.5 hypothetical protein (TIGR) compare
DVU0513 flgG +0.8 4.5 flagellar basal-body rod protein FlgG (TIGR) compare
DVU0512 flgF +0.7 4.2 flagellar basal-body rod protein, putative (TIGR) compare
DVU0310 fliI +0.7 5.5 flagellum-specific ATP synthase FliI (TIGR) compare
DVU1936 phnC +0.7 3.7 phosphonate ABC transporter, ATP-binding protein (TIGR) compare
DVU1934 phnE +0.7 4.4 phosphonate ABC transporter, permease protein (TIGR) compare
DORF4170 +0.7 1.7 no description compare
DVU0045 +0.7 2.7 flagellar biosynthesis protein, FliO, putative (TIGR) compare
DVU0047 +0.7 3.4 flagellar protein FliL (TIGR) compare
DVU0311 +0.7 5.1 flagellar assembly protein FliH, putative (TIGR) compare
DVU3024 +0.7 0.7 hypothetical protein (TIGR) compare
DVU1280 +0.7 2.2 conserved hypothetical protein TIGR00159 (TIGR) compare
DORF18707 +0.7 0.6 no description compare
DVU0312 fliG +0.7 4.8 flagellar motor switch protein FliG (TIGR) compare
DVU0793 +0.7 1.7 hypothetical protein (TIGR) compare
DVU1937 +0.6 4.4 phosphonate ABC transporter, periplasmic phosphonate-binding protein, putative (TIGR) compare
DVU0314 fliE +0.6 3.0 flagellar basal body component FliE (TIGR) compare
DVU1444 flgD +0.6 3.5 basal-body rod modification protein FlgD (TIGR) compare
DVU1449 +0.6 4.7 anti-anti-sigma factor, putative (TIGR) compare
DVU0339 serA +0.6 3.4 D-isomer specific 2-hydroxyacid dehydrogenase family protein (TIGR) compare
DVU1210 +0.6 0.4 conserved hypothetical protein (TIGR) compare
DVU2578 +0.6 5.0 response regulator (TIGR) compare
DVU0515 flgH +0.6 3.5 flagellar L-ring protein FlgH (TIGR) compare
DVU3234 +0.6 2.9 flagellar biosynthetic protein FliR (TIGR) compare
DVU2341 +0.6 2.8 amino acid ABC transproter, permease protein, His/Glu/Gln/Arg/opine family (TIGR) compare
DVU0898 +0.6 4.1 conserved hypothetical protein (TIGR) compare
DVU0378 +0.6 1.8 thioredoxin, putative (TIGR) compare
DVU1452 dtd +0.6 1.7 D-tyrosyl-tRNA(Tyr) deacylase (TIGR) compare
DVU1078 +0.6 4.1 R3H domain protein (TIGR) compare
DVUA0146 +0.6 2.9 hypothetical protein (TIGR) compare
DVU2703 +0.6 0.5 hypothetical protein (TIGR) compare
DVU3233 flhB +0.6 4.5 flagellar biosynthetic protein FlhB (TIGR) compare
DVU0307 +0.6 3.9 flagella basal body rod domain protein (TIGR) compare
DVU3309 +0.5 1.1 endo/excinuclease amino terminal domain protein (TIGR) compare
DVUA0084 +0.5 0.9 transcriptional regulator, AbrB family (TIGR) compare
DVU2044 +0.5 1.2 hypothetical protein (TIGR) compare
DVU1935 phnE +0.5 2.9 phosphonate ABC transporter, permease protein (TIGR) compare
DVU2577 +0.5 3.3 DNA-binding response regulator, LuxR family (TIGR) compare
DVU2289 b2488 +0.5 0.5 hydrogenase, CooX subunit, putative (TIGR) compare
DVU2269 +0.5 1.4 hypothetical protein (TIGR) compare
DVU1863 +0.5 1.8 flagellar synthesis regulator FleN, putative (TIGR) compare
DVU0516 flgI +0.5 3.0 flagellar P-ring protein FlgI (TIGR) compare
DVU2566 lysA-2 +0.5 1.5 diaminopimelate decarboxylase (TIGR) compare
DVU2198 +0.5 0.5 hypothetical protein (TIGR) compare
DVU_tRNA-Thr-1 tRNA-Thr +0.5 0.4 tRNA with anticodon GGT for Thr (VIMSS-AUTO) compare
DVU3139 +0.5 1.4 bacterial extracellular solute-binding protein, family 3 (TIGR) compare
DVU0478 +0.5 2.2 Ser/Thr protein phosphatase family (TIGR) compare
DVU0313 fliF +0.5 3.5 flagellar M-ring protein FliF (TIGR) compare
DVU2300 +0.5 0.7 hypothetical protein (TIGR) compare
DVU0858 +0.5 3.5 lipoprotein, putative (TIGR) compare
DVU1629 yfiA +0.5 2.3 ribosomal subunit interface protein (TIGR) compare
DVU0694 +0.5 3.5 molybdopterin oxidoreductase, molybdopterin-binding subunit, putative (TIGR) compare
DORF24435 +0.5 1.5 SEED: Sll1863 protein compare
DVU0514 +0.5 2.6 FlgA family protein (TIGR) compare
DVU1337 lon +0.5 3.6 ATP-dependent protease La (TIGR) compare
DVU0586 +0.5 1.9 hypothetical protein (TIGR) compare
DVU2343 glnQ +0.5 3.5 amino acid ABC transporter, ATP-binding protein (TIGR) compare
DVU0376 +0.5 0.9 hypothetical protein (TIGR) compare
DVU0764 hup-2 +0.5 1.4 DNA-binding protein HU (TIGR) compare
DVU3393 +0.5 0.8 hypothetical protein (TIGR) compare
DVU2847 +0.5 1.9 hypothetical protein (TIGR) compare
DVU3063 mviN-2 +0.4 2.7 integral membrane protein MviN (TIGR) compare
DVU1442 +0.4 1.6 flagellin FlaG, putative (TIGR) compare
DVU2112 +0.4 2.4 hypothetical protein (TIGR) compare
DVU3227 +0.4 2.6 flagellar basal body-associated protein, putative (TIGR) compare
DORF13021 +0.4 1.2 no description compare
DVU0010 +0.4 1.4 TRAP transporter, DctQ family (TIGR) compare
DVU2725 +0.4 0.4 membrane protein, putative (TIGR) compare
DVU0693 narH +0.4 1.9 molybdopterin oxidoreductase, iron-sulfur cluster-binding subunit, putative (TIGR), containing cytochrome c heme-binding site (VIMSS_AUTO) compare
DVU3243 dnaJ +0.4 1.7 dnaJ protein (TIGR) compare
DVU0318 +0.4 1.5 TPR domain protein (TIGR) compare
DVU1531 +0.4 2.2 methyltransferase, putative (TIGR) compare
DVU0316 flgB +0.4 1.7 flagellar basal-body rod protein FlgB (TIGR) compare
DVU0519 +0.4 3.5 flagellar hook-associated protein FlgK, putative (TIGR) compare
DVU0968 +0.4 2.3 amino acid ABC transporter, ATP-binding protein (TIGR) compare
DVU0698 rfbC +0.4 3.1 dTDP-4-dehydrorhamnose 3,5-epimerase (TIGR) compare
DVU0912 +0.4 1.2 conserved domain protein (TIGR) compare
DVU3260 +0.4 1.7 hypothetical protein (TIGR) compare
DVU2947 +0.4 1.3 anaerobic ribonucleoside-triphosphate reductase, putative (TIGR) compare
DVU1692 +0.4 1.7 hypothetical protein (TIGR) compare
DORF12455 +0.4 0.5 SEED: helix-turn-helix protein, CopG family compare
DVU0831 +0.4 1.7 PTS system, IID component, putative (TIGR) compare
DVU0097 potB +0.4 1.5 polyamine ABC transporter, permease protein (TIGR) compare
DVU1129 +0.4 1.8 conserved hypothetical protein (TIGR) compare
DVU1063 flrC +0.4 2.7 transcriptional regulatory protein (TIGR) compare
DVU2677 +0.4 2.8 sensor histidine kinase/response regulator (TIGR) compare
DVU1221 +0.4 1.1 hypothetical protein (TIGR) compare
DVU1520 +0.4 0.3 hypothetical protein (TIGR) compare
DVU1536 mltC +0.4 1.8 transglycosylase, SLT family (TIGR) compare
DVU1729 +0.4 1.5 killer protein, putative (TIGR) compare
DVU3387 +0.4 2.5 hypothetical protein (TIGR) compare
DORF6830 +0.4 1.8 SEED: FIG00602532: hypothetical protein compare
DVU2896 +0.4 3.1 TPR domain protein (TIGR) compare
DVUA0006 mgtE +0.4 1.8 magnesium transporter MgtE, putative (TIGR) compare
DVU2166 +0.4 1.2 holin (TIGR) compare
DVU3232 flhA +0.4 3.0 flagellar biosynthetic protein FlhA (TIGR) compare
DVU2250 +0.4 2.7 AMP-binding protein (TIGR) compare
DVU2873 +0.4 0.4 hypothetical protein (TIGR) compare
DORF807 +0.4 0.6 no description compare
DVU1507 +0.4 1.9 hypothetical protein (TIGR) compare
DVU3329 +0.4 1.0 hypothetical protein (TIGR) compare
DVU0008 +0.4 0.3 hypothetical protein (TIGR) compare
DVU0913 +0.4 1.3 conserved hypothetical protein (TIGR) compare
DVU0146 +0.4 2.3 hypothetical protein (TIGR) compare
DVU2606 +0.4 1.1 hypothetical protein (TIGR) compare
DVU0740 +0.4 2.0 membrane protein, putative (TIGR) compare
DVU1752 +0.4 2.3 hypothetical protein (TIGR) compare
DORF20226 +0.4 1.7 no description compare
DVU1154 +0.3 0.4 hypothetical protein (TIGR) compare
DVU1726 +0.3 0.6 hypothetical protein (TIGR) compare
DVU0862 +0.3 2.2 flagellar protein FliS/hypothetical protein, fusion (TIGR) compare
DVU3289 +0.3 1.3 hypothetical protein (TIGR) compare
DVU1363 rfbD +0.3 2.3 dTDP-4-dehydrorhamnose reductase (TIGR) compare
DVU1791 +0.3 0.9 GatB/Yqey family protein (TIGR) compare
DVU1033 cinA +0.3 0.3 competence/damage-inducible protein CinA protein, truncation (TIGR) compare
DVU0410 +0.3 2.2 hypothetical protein (TIGR) compare
DVU3028 +0.3 1.8 iron-sulfur cluster-binding protein (TIGR) compare
DVU0046 fliN +0.3 2.5 flagellar motor switch protein FliN (TIGR) compare
DVU0880 +0.3 1.8 hypothetical protein (TIGR) compare
DVU2115 +0.3 0.6 hypothetical protein (TIGR) compare
DVU0692 +0.3 1.8 molybdopterin oxidoreductase, transmembrane subunit, putative (TIGR) compare
DVU2408 +0.3 1.3 hypothetical protein (TIGR) compare
DVU2021 +0.3 1.2 hypothetical protein (TIGR) compare
DVU0106 glnP +0.3 1.6 glutamine ABC transporter, permease protein (TIGR) compare
DORF768 +0.3 1.1 no description compare
DVU2549 +0.3 1.8 hypothetical protein (TIGR) compare
DVU2128 +0.3 1.8 hypothetical protein (TIGR) compare
DVUA0053 +0.3 1.8 conserved hypothetical protein (TIGR) compare
DVU2608 motA-3 +0.3 2.0 chemotaxis protein MotA (TIGR) compare
DVU0863 +0.3 2.8 flagellar hook-associated protein 2, putative (TIGR) compare
DVU3177 +0.3 1.7 hypothetical protein (TIGR) compare
DVU1464 +0.3 2.4 heptosyltransferase family protein (TIGR) compare
DVU2864 +0.3 0.5 hypothetical protein (TIGR) compare
DVU2308 +0.3 2.3 conserved hypothetical protein TIGR00022 (TIGR) compare
DVU0920 atpI +0.3 0.5 ATP synthase protein I (TIGR) compare
DVU1465 +0.3 2.3 CgeB family protein (TIGR) compare
DVU1443 flgE +0.3 1.5 flagellar hook protein FlgE (TIGR) compare
DVU1859 +0.3 1.1 hypothetical protein (TIGR) compare
DVU3133 glpF +0.3 0.7 glycerol uptake facilitator protein (TIGR) compare
DVU1407 +0.3 1.0 radical SAM domain protein (TIGR) compare
DVU1359 +0.3 1.7 hypothetical protein (TIGR) compare
DVU0095 potD-1 +0.3 2.1 polyamine ABC transporter, periplasmic polyamine-binding protein (TIGR) compare
DVU2766 +0.3 0.8 hypothetical protein (TIGR) compare
DVU2423 +0.3 2.0 transcriptional regulator, putative (TIGR) compare
DVU1445 +0.3 1.9 flagellar hook-length control domain protein (TIGR) compare
DVU1193 radC +0.3 1.7 DNA repair protein RadC (TIGR) compare
DVU1589 +0.3 1.4 hypothetical protein (TIGR) compare
DVU3149 sppA +0.3 1.6 signal peptide peptidase SppA, 36K type (TIGR) compare
DVU1479 +0.3 0.2 conserved hypothetical protein (TIGR) compare
DVU2441 hspC +0.3 0.5 heat shock protein, Hsp20 family (TIGR) compare
DVU2657 +0.3 0.7 6-pyruvoyl tetrahydrobiopterin synthase, putative (TIGR) compare
DORF26828 +0.3 1.6 SEED: FIG00605560: hypothetical protein compare
DVU1237 glnP +0.3 1.0 amino acid ABC transporter, permease protein, His/Glu/Gln/Arg/opine family (TIGR) compare
DVU0386 glnH +0.3 1.5 amino acid ABC transporter, periplasmic amino acid-binding protein (TIGR) compare
DVU3085 +0.3 0.6 hypothetical protein (TIGR) compare
DVUA0114 +0.3 0.8 hypothetical protein (TIGR) compare
DVU2839 +0.3 1.3 conserved hypothetical protein (TIGR) compare
DORF10279 +0.3 1.1 no description compare
DVU0773 +0.3 0.5 hypothetical protein (TIGR) compare
DVU1621 +0.3 0.9 hypothetical protein (TIGR) compare
DVU1992 cat +0.3 1.7 antibiotic acetyltransferase (TIGR) compare
DVU2151 +0.3 1.9 conserved hypothetical protein (TIGR) compare
DORF10286 +0.3 1.5 no description compare
DVU0754 +0.3 0.6 hypothetical protein (TIGR) compare
DVU2210 +0.3 1.8 TPR domain protein (TIGR) compare
DVU2340 +0.3 1.1 amino acid ABC transporter, permease protein, His/Glu/Gln/Arg/opine family (TIGR) compare
DVU0063 +0.3 0.6 transcriptional regulator, MarR family (TIGR) compare
DVU2631 +0.3 0.6 hypothetical protein (TIGR) compare
DVU0859 +0.3 1.5 hypothetical protein (TIGR) compare
DVU0669 +0.3 0.8 hypothetical protein (TIGR) compare
DVU2809 +0.3 1.6 cytochrome c3 (TIGR) compare
DVU2068 +0.3 1.3 HD domain protein (TIGR) compare
DVU0973 +0.3 0.2 4-hydroxybenzoate octaprenyltransferase, putative (TIGR) compare
DVU1068 +0.3 1.1 branched-chain amino acid ABC transporter, permease protein (TIGR) compare
DVU2871 +0.3 1.7 minor capsid protein C (TIGR) compare
DVU1828 gidA +0.3 0.7 glucose inhibited division protein A (TIGR) compare
DVU1919 +0.3 1.3 hydrogenase expression/formation protein, putative (TIGR) compare
DVU2058 +0.3 1.3 HDIG domain protein (TIGR) compare
DVU3274 +0.3 1.1 hypothetical protein (TIGR) compare
DVU3066 +0.3 1.3 DNA-binding protein (TIGR) compare


Specific Phenotypes

For 1 genes in this experiment

For fermentative growth Sodium pyruvate in Desulfovibrio vulgaris Hildenborough JW710

For fermentative growth Sodium pyruvate across organisms