Experiment set9IT051 for Sinorhizobium meliloti 1021

Compare to:

LB

200 most important genes:

  gene name fitness t score description  
SMc00987 -3.7 -2.5 hypothetical protein compare
SMc02425 -3.5 -4.8 transcriptional regulator compare
SMc03124 -3.3 -2.3 periplasmic binding ABC transporter protein compare
SMc03100 -3.2 -2.1 hypothetical protein compare
SMc01360 -2.9 -2.7 aspartate carbamoyltransferase catalytic subunit compare
SMc02683 -2.8 -2.6 hypothetical protein compare
SMc00013 -2.7 -2.4 cytochrome C oxidase subunit III transmembrane protein compare
SMc02858 -2.6 -1.0 chaperone protein DnaJ compare
SMc01206 -2.5 -1.9 queuine tRNA-ribosyltransferase compare
SMc01242 -2.4 -2.4 signal peptide protein compare
SMc01568 -2.4 -1.2 hypothetical protein compare
SMc03128 -2.4 -3.6 ABC transporter permease compare
SMc00963 -2.3 -2.2 hypothetical protein compare
SMc00876 -2.2 -4.2 ATP-binding MRP protein compare
SMc00189 -2.2 -4.3 cytochrome C1 protein compare
SMc00073 -2.2 -1.4 hypothetical protein compare
SMc00914 -2.1 -2.8 oxidoreductase compare
SMc02778 -2.1 -1.7 hydroxyacid aldolase compare
SMc01471 -2.0 -2.9 cytochrome C oxidase assembly factor transmembrane protein compare
SMc02115 -2.0 -0.7 hypothetical protein compare
SMc00295 -2.0 -1.5 hypothetical protein compare
SMc00451 -2.0 -6.8 processing protease compare
SMc01207 -2.0 -2.2 S-adenosylmethionine--tRNA ribosyltransferase-isomerase compare
SMc04121 -1.9 -1.9 uracil phosphoribosyltransferase compare
SMc02856 -1.9 -8.8 penicillin-binding protein compare
SMc03229 -1.9 -2.0 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
SMc00450 -1.9 -1.2 protoheme IX farnesyltransferase compare
SMc01280 -1.8 -2.3 protease compare
SMc00760 -1.8 -4.0 recombinase A compare
SMc02077 -1.8 -2.9 exodeoxyribonuclease III protein compare
SMc02245 -1.8 -4.1 dihydroorotate dehydrogenase 2 compare
SMc01877 -1.8 -4.3 DNA repair protein compare
SMc02246 -1.8 -0.9 hypothetical protein compare
SMa1765 -1.7 -2.1 hypothetical protein compare
SMc01472 -1.7 -1.5 50S ribosomal protein L11 methyltransferase compare
SMc02866 -1.7 -3.7 transcriptional regulator compare
SMc01845 -1.7 -1.9 transglycosylase transmembrane protein compare
SMc02165 -1.7 -6.4 orotate phosphoribosyltransferase compare
SMc01880 -1.7 -1.6 pantoate--beta-alanine ligase compare
SMc00302 -1.7 -1.6 hypothetical protein compare
SMc01220 -1.6 -4.6 lipopolysaccharide core biosynthesis glycosyl transferase compare
SMc02166 -1.6 -8.7 dihydroorotase compare
SMc02897 -1.6 -2.1 cytochrome C transmembrane protein compare
SMc00928 -1.6 -1.2 signal peptide protein compare
SMc01800 -1.6 -0.8 cytochrome C oxidase assembly transmembrane protein compare
SMc00427 -1.5 -1.4 peptide chain release factor RF-3 protein compare
SMc02850 -1.5 -1.4 DNA polymerase I compare
SMc01361 -1.5 -3.0 dihydroorotase compare
SM_b20758 -1.5 -2.4 ArsR family transcriptional regulator compare
SMc03878 -1.5 -2.4 acetoacetyl-CoA reductase compare
SM_b21175 -1.5 -3.4 phosphate uptake ABC transporter permease compare
SMc04024 -1.4 -5.6 membrane-bound lytic murein transglycosylase compare
SMc03978 -1.4 -1.4 transketolase compare
SMc00188 -1.4 -5.8 cytochrome B transmembrane protein compare
SMc00461 -1.4 -1.7 deoxyuridine 5'-triphosphate nucleotidohydrolase compare
SMc02894 -1.4 -2.0 hypothetical protein compare
SMc02121 -1.4 -1.7 ABC transporter for L-Glutamine, L-Histidine, and other L-amino acids, ATPase component (from data) compare
SMc02867 -1.4 -2.0 multidrug-efflux system transmembrane protein compare
SMc02055 -1.4 -1.9 phytoene synthase compare
SMc04385 -1.3 -4.6 L-2-aminoadipate semialdehyde dehydrogenase (EC 1.2.1.31) (from data) compare
SMc03127 -1.3 -1.2 ABC transporter permease compare
SMc00010 -1.3 -1.2 cytochrome C oxidase polypeptide I transmembrane protein compare
SMc03069 -1.3 -2.1 6-phosphogluconolactonase compare
SMc02495 -1.3 -1.2 translaldolase compare
SM_b20452 -1.3 -2.8 hypothetical protein compare
SMa2215 -1.2 -2.8 GntR family transcriptional regulator compare
SMc02232 -1.2 -1.6 hypothetical protein compare
SMc01258 -1.2 -4.5 hypothetical protein compare
SMc02149 -1.2 -1.3 hypothetical protein compare
SM_b21174 -1.2 -3.1 phosphate uptake ABC transporter permease compare
SM_b20294 -1.2 -1.5 transcriptional regulator NanR compare
SMc02868 -1.2 -3.3 multidrug efflux system protein compare
SMc03850 -1.2 -0.6 heme exporter D (cytochrome C-type biogenesis protein) transmembrane compare
SM_b21479 -1.2 -1.7 hypothetical protein compare
SMc02753 -1.1 -0.7 PTS system transporter subunit IIA compare
SMc01019 -1.1 -4.9 hypothetical protein compare
SMc00169 -1.1 -8.5 malic enzyme compare
SMc00815 -1.1 -0.7 inosine 5'-monophosphate dehydrogenase compare
SM_b20258 -1.1 -2.5 transcriptional regulator compare
SMc04003 -1.1 -1.3 50S ribosomal protein L36 compare
SMc00355 -1.1 -2.1 hypothetical protein compare
SMc04085 -1.1 -3.5 hypothetical protein compare
SMc02755 -1.0 -4.0 S-adenosyl-L-homocysteine hydrolase compare
SMa1630 -1.0 -1.6 hypothetical protein compare
SMc01012 -1.0 -1.5 hypothetical protein compare
SMc01850 -1.0 -1.9 hypothetical protein compare
SM_b21176 -1.0 -3.8 phosphate uptake ABC transporter substrate-binding protein precursor compare
SMc02569 -1.0 -3.5 imidazole glycerol phosphate synthase subunit HisF compare
SMc02641 -1.0 -1.6 UDP-glucose 6-dehydrogenase compare
SMc01208 -1.0 -1.9 peptidyl-prolyl cis-trans isomerase B protein compare
SMc00602 -1.0 -3.3 excinuclease ABC subunit C compare
SMc00970 -1.0 -1.3 exodeoxyribonuclease VII small subunit compare
SMc03899 -1.0 -0.9 hypothetical protein compare
SMc03763 -1.0 -0.9 cytosine-specific methyltransferase compare
SMc01885 -1.0 -5.1 aminopeptidase P protein compare
SMa1118 -1.0 -1.6 HspC2 heat shock protein compare
SM_b20307 -1.0 -1.0 dihydroxyacetone kinase compare
SMc01509 -0.9 -1.7 hypothetical protein compare
SMc01235 -0.9 -6.1 excinuclease ABC subunit A compare
SMc00009 -0.9 -3.8 cytochrome C oxidase subunit II protein compare
SMc04391 -0.9 -1.6 3-ketoacyl-ACP reductase compare
SMc00072 -0.9 -1.3 peroxiredoxin protein compare
SMc01782 -0.9 -4.2 hypothetical protein compare
SMc00566 -0.9 -2.2 hypothetical protein compare
SMc00187 -0.9 -2.1 ubiquinol-cytochrome C reductase iron-sulfur subunit protein compare
SMa5033 -0.9 -1.0 hypothetical protein compare
SMc00973 -0.9 -1.9 hypothetical protein compare
SMc01461 -0.9 -3.1 DNA helicase II protein compare
SMc00711 -0.9 -2.5 cyclohexadienyl dehydrogenase compare
SMc02504 -0.9 -3.1 transcriptional regulator compare
SMc02640 -0.9 -2.6 UDP-glucuronic acid epimerase compare
SM_b20086 -0.9 -0.9 hypothetical protein compare
SMc02050 -0.9 -2.3 trigger factor compare
SM_b21035 -0.9 -3.4 hypothetical protein compare
SMc02844 -0.9 -1.3 transcriptional regulator compare
SMc00419 -0.9 -1.1 glutathione synthetase compare
SMc01342 -0.9 -2.5 hypothetical protein compare
SMc00143 -0.9 -1.6 molybdopterin-guanine dinucleotide biosynthesis protein MobA compare
SMc00492 -0.9 -0.5 hypothetical protein compare
SMc00555 -0.8 -1.1 colicin V production transmembrane protein compare
SMc02484 -0.8 -2.7 amino acid efflux transmembrane protein compare
SMc00006 -0.8 -1.9 hypothetical protein compare
SMc04174 -0.8 -1.0 signal peptide protein compare
SMc01655 -0.8 -2.4 ABC transporter permease compare
SMc04383 -0.8 -2.5 putative hydrolase, required for lysine catabolism (from data) compare
SMc00576 -0.8 -2.5 hypothetical protein compare
SMc02313 -0.8 -3.0 hypothetical protein compare
SMc01579 -0.8 -1.1 hypothetical protein compare
SMc01931 -0.8 -2.1 hypothetical protein compare
SMa1779 -0.8 -1.4 hypothetical protein compare
SMa1838 -0.8 -2.3 dehydrogenase compare
SMc02758 -0.8 -2.1 nucleotidyl transferase compare
SMc00412 -0.8 -2.0 orotidine 5'-phosphate decarboxylase compare
SMc02582 -0.8 -1.8 hypothetical protein compare
SMc02909 -0.8 -0.9 transglycosylase transmembrane protein compare
SMc00229 -0.7 -3.0 hypothetical protein compare
SMc01929 -0.7 -1.5 hypothetical protein compare
SMc03993 -0.7 -2.2 hypothetical protein compare
SM_b20880 -0.7 -3.5 ATP-dependent RNA helicase compare
SMa2253 -0.7 -0.8 hypothetical protein compare
SMc02250 -0.7 -1.8 large-conductance mechanosensitive channel compare
SMc01842 -0.7 -1.5 methyltransferase transcription regulator protein compare
SMc04224 -0.7 -1.2 hypothetical protein compare
SMc00554 -0.7 -3.3 amidophosphoribosyltransferase compare
SMc02171 -0.7 -1.6 periplasmic binding ABC transporter protein compare
SMc03030 -0.7 -2.8 flagellar basal body rod protein FlgG compare
SMc04090 -0.7 -1.8 sun protein compare
SMc00230 -0.7 -1.9 hypothetical protein compare
SMc01127 -0.7 -2.2 hypothetical protein compare
SMc02812 -0.7 -1.5 hypothetical protein compare
SMc00557 -0.7 -2.5 alanine racemase compare
SMc02505 -0.7 -0.7 hypothetical protein compare
SMc03890 -0.7 -2.3 transcriptional regulator compare
SMc02485 -0.7 -1.1 signal peptide protein compare
SMc00667 -0.7 -1.5 hypothetical protein compare
SMc02451 -0.7 -0.7 hypothetical protein compare
SM_b20904 -0.7 -2.2 sugar uptake ABC transporter ATP-binding protein compare
SMc03839 -0.7 -1.0 hypothetical protein compare
SMc00404 -0.7 -0.8 hypothetical protein compare
SMc02503 -0.7 -3.6 hypothetical protein compare
SMc03046 -0.7 -2.5 transcriptional regulator compare
SMc01187 -0.7 -1.0 rare lipoprotein A compare
SM_b21454 -0.7 -1.3 hypothetical protein compare
SMc03795 -0.7 -0.9 isopropylmalate isomerase small subunit compare
SMc03924 -0.7 -3.6 glycogen synthase compare
SMc00239 -0.7 -0.6 hypothetical protein compare
SMc03288 -0.7 -3.0 hypothetical protein compare
SMc04432 -0.7 -2.0 hypothetical protein compare
SMc02201 -0.7 -1.6 hypothetical protein compare
SMc02822 -0.7 -2.0 hypothetical protein compare
SMc04384 -0.7 -2.5 (R)-2-hydroxyglutarate dehydrogenase (EC 1.1.99.39) (from data) compare
SMa2289 -0.6 -0.9 hypothetical protein compare
SMc01438 -0.6 -2.6 protease precursor signal peptide protein compare
SMc00514 -0.6 -1.7 monooxygenase compare
SMc00085 -0.6 -2.4 cytochrome oxidase complex biogenesis factor transmembrane protein compare
SMc02039 -0.6 -2.3 oxidoreductase compare
SMc01972 -0.6 -4.2 oxidoreductase compare
SMc02102 -0.6 -1.4 hypothetical protein compare
SMc03746 -0.6 -1.4 hypothetical protein compare
SMc02309 -0.6 -2.3 arsenate reductase compare
SMc02862 -0.6 -2.2 Pit accessory protein compare
SMa1176 -0.6 -1.4 hypothetical protein compare
SMc03008 -0.6 -0.7 chemotaxis protein compare
SMc01515 -0.6 -1.4 hypothetical protein compare
SMa1002 -0.6 -0.4 hypothetical protein compare
SM_b20690 -0.6 -0.9 hypothetical protein compare
SMc00647 -0.6 -1.5 ribosomal large subunit pseudouridine synthase compare
SMc03207 -0.6 -2.6 aromatic amino acid degradation protein compare
SMc04213 -0.6 -1.1 diacylglycerol kinase compare
SMc00806 -0.6 -1.6 hypothetical protein compare
SMc01183 -0.6 -0.5 LexA repressor compare
SMa0846 -0.6 -0.9 transposase, fragment compare
SMc02227 -0.6 -1.9 fatty oxidation complex enoyl-COA hydratase/3-hydroxyacyl-COA dehydrogenase/3-hydroxybutyryl-COA epimerase compare
SMc01713 -0.6 -1.8 hypothetical protein compare
SMc01853 -0.6 -2.4 hypothetical protein compare
SMc04242 -0.6 -0.8 zinc uptake regulation protein compare
SMc00104 -0.6 -1.4 hypothetical protein compare
SMa0759 -0.6 -1.9 hypothetical protein compare
SMc04169 -0.6 -3.8 transcriptional regulator compare
SMa1442 -0.6 -2.5 GntR family transcriptional regulator compare


Specific Phenotypes

None in this experiment

For Sinorhizobium meliloti 1021 in lb experiments