Experiment set9IT051 for Klebsiella michiganensis M5al

Compare to:

RCH2_defined_Glucose_noNitrogen in Eppendorf tube with sand, cultured with Sinorhizobium meliloti and Methylobacterium sp. UNC378MF

200 most important genes:

  gene name fitness t score description  
BWI76_RS20650 -3.9 -2.7 phosphoenolpyruvate--protein phosphotransferase compare
BWI76_RS20435 -3.8 -2.2 chorismate synthase compare
BWI76_RS07070 -3.3 -6.4 5-(carboxyamino)imidazole ribonucleotide mutase compare
BWI76_RS10990 -3.3 -5.0 dihydroorotase compare
BWI76_RS02530 -3.3 -3.8 tRNA dimethylallyltransferase compare
BWI76_RS09660 -3.2 -2.2 DNA translocase FtsK compare
BWI76_RS09910 -3.1 -16.9 dihydroorotate dehydrogenase (quinone) compare
BWI76_RS23240 -3.0 -5.0 exonuclease V subunit gamma compare
BWI76_RS20895 -3.0 -6.7 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
BWI76_RS05200 -3.0 -3.9 bifunctional uridylyltransferase/uridylyl-removing protein compare
BWI76_RS04510 -3.0 -3.2 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
BWI76_RS01800 -2.9 -3.7 glucose-6-phosphate isomerase compare
BWI76_RS01210 -2.8 -3.1 tyrosine recombinase XerC compare
BWI76_RS00180 -2.8 -3.3 F0F1 ATP synthase subunit epsilon compare
BWI76_RS23230 -2.8 -4.6 exodeoxyribonuclease V subunit beta compare
BWI76_RS04470 -2.7 -8.4 carbamoyl phosphate synthase large subunit compare
BWI76_RS20350 -2.7 -10.1 amidophosphoribosyltransferase compare
BWI76_RS01615 -2.7 -13.2 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/inosine monophosphate cyclohydrolase compare
BWI76_RS11965 -2.7 -5.3 orotidine-5'-phosphate decarboxylase compare
BWI76_RS02410 -2.6 -2.5 EF-P beta-lysylation protein EpmB compare
BWI76_RS20355 -2.6 -3.7 colicin V production protein compare
BWI76_RS04465 -2.5 -6.8 carbamoyl-phosphate synthase small subunit compare
BWI76_RS07065 -2.5 -7.5 5-(carboxyamino)imidazole ribonucleotide synthase compare
BWI76_RS01350 -2.5 -1.8 NAD(P)H-flavin reductase compare
BWI76_RS00345 -2.4 -4.9 protein disulfide oxidoreductase DsbA compare
BWI76_RS21265 -2.4 -12.0 phosphoribosylformylglycinamidine synthase compare
BWI76_RS02995 -2.3 -6.0 aspartate carbamoyltransferase compare
BWI76_RS19840 -2.3 -1.9 hypothetical protein compare
BWI76_RS22755 -2.3 -6.2 phosphoadenosine phosphosulfate reductase compare
BWI76_RS17250 -2.2 -6.1 bifunctional acetaldehyde-CoA/alcohol dehydrogenase compare
BWI76_RS25600 -2.2 -1.6 tRNA-Thr compare
BWI76_RS20965 -2.1 -6.6 phosphoribosylformylglycinamidine cyclo-ligase compare
BWI76_RS27385 -2.1 -8.0 orotate phosphoribosyltransferase compare
BWI76_RS25115 -2.1 -9.1 argininosuccinate synthase compare
BWI76_RS01610 -2.0 -8.0 phosphoribosylamine--glycine ligase compare
BWI76_RS22690 -2.0 -3.1 adenylyl-sulfate kinase compare
BWI76_RS09755 -2.0 -5.5 phosphoserine transaminase compare
BWI76_RS27390 -2.0 -4.5 ribonuclease PH compare
BWI76_RS00855 -1.8 -8.4 argininosuccinate lyase compare
BWI76_RS00835 -1.8 -9.2 phosphoenolpyruvate carboxylase compare
BWI76_RS00400 -1.8 -1.8 glutamine synthetase compare
BWI76_RS09190 -1.8 -3.8 hypothetical protein compare
BWI76_RS21370 -1.7 -2.5 ATP-dependent RNA helicase SrmB compare
BWI76_RS04160 -1.6 -5.6 phosphoserine phosphatase compare
BWI76_RS23920 -1.6 -4.6 D-3-phosphoglycerate dehydrogenase compare
BWI76_RS22765 -1.6 -7.4 sulfite reductase subunit alpha compare
BWI76_RS09735 -1.6 -6.1 formate acetyltransferase compare
BWI76_RS04715 -1.5 -1.9 division/cell wall cluster transcriptional repressor MraZ compare
BWI76_RS25335 -1.5 -2.9 stringent starvation protein A compare
BWI76_RS24575 -1.4 -2.0 hypothetical protein compare
BWI76_RS23265 -1.4 -2.9 hypothetical protein compare
BWI76_RS22760 -1.4 -4.9 sulfite reductase subunit beta compare
BWI76_RS15975 -1.4 -1.5 hypothetical protein compare
BWI76_RS27430 -1.3 -1.5 (p)ppGpp synthetase compare
BWI76_RS24585 -1.3 -2.5 glycerol dehydrogenase compare
BWI76_RS09760 -1.3 -5.4 3-phosphoshikimate 1-carboxyvinyltransferase compare
BWI76_RS09315 -1.3 -2.1 hypothetical protein compare
BWI76_RS09730 -1.3 -2.0 pyruvate formate lyase 1-activating protein compare
BWI76_RS15115 -1.3 -5.0 MFS transporter compare
BWI76_RS21375 -1.2 -1.8 autonomous glycyl radical cofactor GrcA compare
BWI76_RS01385 -1.2 -2.7 potassium transporter compare
BWI76_RS00745 -1.2 -3.8 1,4-dihydroxy-2-naphthoate polyprenyltransferase compare
BWI76_RS00140 -1.1 -1.1 phosphate transport system regulator PhoU compare
BWI76_RS00720 -1.1 -2.6 DNA-binding response regulator compare
BWI76_RS09645 -1.1 -1.3 thioredoxin-disulfide reductase compare
BWI76_RS11130 -1.1 -7.1 PTS glucose transporter subunit IIBC compare
BWI76_RS10575 -1.1 -1.6 polar amino acid ABC transporter permease compare
BWI76_RS24025 -1.1 -5.3 agmatinase compare
BWI76_RS11980 -1.1 -1.9 DeoR family transcriptional regulator compare
BWI76_RS15760 -1.1 -1.6 hypothetical protein compare
BWI76_RS20375 -1.0 -2.4 membrane protein compare
BWI76_RS26085 -1.0 -2.1 3-dehydroquinate synthase compare
BWI76_RS02180 -1.0 -1.3 hypothetical protein compare
BWI76_RS17300 -1.0 -1.5 tRNA-Tyr compare
BWI76_RS02930 -1.0 -3.4 anaerobic ribonucleoside-triphosphate reductase activating protein compare
BWI76_RS26410 -1.0 -1.3 membrane protein compare
BWI76_RS00390 -1.0 -3.5 two-component system sensor histidine kinase NtrB compare
BWI76_RS16315 -1.0 -1.2 SirA-like protein compare
BWI76_RS26570 -1.0 -2.1 anion permease compare
BWI76_RS23015 -1.0 -1.4 cobalt transporter ATP-binding subunit compare
BWI76_RS08210 -0.9 -2.2 N-acetylglucosamine-6-phosphate deacetylase compare
BWI76_RS07820 -0.9 -1.6 S-methyl-5-thioribose kinase compare
BWI76_RS26075 -0.9 -2.0 DNA adenine methylase compare
BWI76_RS07475 -0.9 -1.0 DNA-binding transcriptional regulator RamA compare
BWI76_RS15835 -0.9 -0.7 hypothetical protein compare
BWI76_RS08530 -0.9 -1.8 protein TolA compare
BWI76_RS26390 -0.9 -2.6 cell division protein FtsX compare
BWI76_RS04305 -0.9 -1.1 molecular chaperone DnaJ compare
BWI76_RS16090 -0.9 -2.4 two-component system response regulator DcuR compare
BWI76_RS00965 -0.9 -0.9 acetolactate synthase 2 small subunit compare
BWI76_RS08515 -0.9 -1.9 acyl-CoA thioesterase YbgC compare
BWI76_RS18165 -0.9 -1.2 NUDIX pyrophosphatase compare
BWI76_RS15290 -0.9 -1.3 transcriptional regulator compare
BWI76_RS05235 -0.9 -1.1 hypothetical protein compare
BWI76_RS06535 -0.8 -3.4 endopeptidase La compare
BWI76_RS15680 -0.8 -3.2 hypothetical protein compare
BWI76_RS05450 -0.8 -0.9 ribonuclease HI compare
BWI76_RS12470 -0.8 -1.6 thiosulfate sulfurtransferase PspE compare
BWI76_RS11440 -0.8 -1.1 hypothetical protein compare
BWI76_RS11060 -0.8 -1.6 septum formation inhibitor Maf compare
BWI76_RS25960 -0.8 -2.4 NUDIX hydrolase compare
BWI76_RS12570 -0.8 -1.5 DUF1365 domain-containing protein compare
BWI76_RS02610 -0.8 -3.1 transcriptional regulator compare
BWI76_RS25505 -0.8 -4.0 RNase E specificity factor CsrD compare
BWI76_RS16485 -0.8 -0.9 ribonuclease T compare
BWI76_RS23480 -0.7 -5.3 EAL domain-containing protein compare
BWI76_RS08180 -0.7 -3.7 asparagine synthase B compare
BWI76_RS00025 -0.7 -0.7 hypothetical protein compare
BWI76_RS06485 -0.7 -1.8 cytochrome o ubiquinol oxidase subunit III compare
BWI76_RS27940 -0.7 -2.3 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
BWI76_RS07225 -0.7 -2.1 putative oxidoreductase compare
BWI76_RS10035 -0.7 -1.3 hypothetical protein compare
BWI76_RS18060 -0.7 -0.7 hypothetical protein compare
BWI76_RS22805 -0.7 -3.9 GTP diphosphokinase compare
BWI76_RS00850 -0.7 -3.2 acetylglutamate kinase compare
BWI76_RS26015 -0.7 -1.7 DUF2559 domain-containing protein compare
BWI76_RS13400 -0.7 -1.8 GntR family transcriptional regulator compare
BWI76_RS08535 -0.7 -1.7 translocation protein TolB compare
BWI76_RS12070 -0.7 -1.0 hypothetical protein compare
BWI76_RS00385 -0.7 -3.5 nitrogen assimilation regulatory protein compare
BWI76_RS11430 -0.7 -1.0 lipoprotein compare
BWI76_RS02155 -0.7 -2.2 D-allose transporter subunit compare
BWI76_RS05070 -0.7 -1.2 type II secretion system protein GspH compare
BWI76_RS20380 -0.6 -0.9 tRNA pseudouridine(38-40) synthase TruA compare
BWI76_RS12240 -0.6 -3.4 terminase small subunit compare
BWI76_RS14780 -0.6 -0.9 phosphotriesterase compare
BWI76_RS26775 -0.6 -2.1 endo-1,4-D-glucanase compare
BWI76_RS21505 -0.6 -0.9 hypothetical protein compare
BWI76_RS15810 -0.6 -2.6 hypothetical protein compare
BWI76_RS04645 -0.6 -3.5 3-dehydroquinase compare
BWI76_RS18695 -0.6 -1.3 GntR family transcriptional regulator compare
BWI76_RS09740 -0.6 -3.1 formate transporter FocA compare
BWI76_RS26200 -0.6 -3.0 starch synthase compare
BWI76_RS24900 -0.6 -0.9 DeoR family transcriptional regulator compare
BWI76_RS09050 -0.6 -2.1 MFS transporter compare
BWI76_RS18920 -0.6 -1.3 ATP phosphoribosyltransferase compare
BWI76_RS14755 -0.6 -1.4 SIS domain-containing protein compare
BWI76_RS06290 -0.6 -1.3 ACP phosphodiesterase compare
BWI76_RS10770 -0.6 -1.5 pyrimidine utilization protein C compare
BWI76_RS20640 -0.6 -2.4 cysteine synthase A compare
BWI76_RS11040 -0.6 -1.9 ribonuclease E compare
BWI76_RS26890 -0.6 -0.8 hypothetical protein compare
BWI76_RS06850 -0.6 -2.1 inosine/guanosine kinase compare
BWI76_RS23360 -0.6 -1.6 diaminopimelate decarboxylase compare
BWI76_RS04565 -0.6 -1.8 bifunctional tRNA pseudouridine(32) synthase/ribosomal large subunit pseudouridine synthase RluA compare
BWI76_RS02935 -0.6 -3.4 anaerobic ribonucleoside triphosphate reductase compare
BWI76_RS26455 -0.6 -1.7 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase compare
BWI76_RS23760 -0.6 -1.1 tRNA-Gly compare
BWI76_RS09115 -0.6 -1.9 30S ribosomal protein S12 methylthiotransferase RimO compare
BWI76_RS18240 -0.6 -1.0 L-arabinose ABC transporter permease AraH compare
BWI76_RS08110 -0.6 -1.7 glutamate/aspartate ABC transporter substrate-binding protein compare
BWI76_RS14820 -0.6 -1.3 LysR family transcriptional regulator compare
BWI76_RS11235 -0.6 -0.8 hypothetical protein compare
BWI76_RS12985 -0.6 -1.3 transcriptional regulator compare
BWI76_RS04805 -0.6 -1.9 8-oxo-dGTP diphosphatase compare
BWI76_RS00875 -0.6 -2.6 DNA-binding transcriptional regulator FabR compare
BWI76_RS13685 -0.5 -0.7 IclR family transcriptional regulator compare
BWI76_RS05365 -0.5 -3.9 D-methionine ABC transporter, ATP-binding protein compare
BWI76_RS06240 -0.5 -2.2 branched-chain amino acid transport system 2 carrier protein BrnQ compare
BWI76_RS21460 -0.5 -1.0 translation inhibitor protein RaiA compare
BWI76_RS19035 -0.5 -2.6 dTDP-rhamnosyl transferase compare
BWI76_RS00425 -0.5 -2.1 D-tyrosyl-tRNA(Tyr) deacylase compare
BWI76_RS14325 -0.5 -1.9 maturase compare
BWI76_RS20930 -0.5 -0.9 arsenate reductase (glutaredoxin) compare
BWI76_RS03015 -0.5 -1.1 RNase E inhibitor protein compare
BWI76_RS18140 -0.5 -1.5 zinc ABC transporter permease compare
BWI76_RS24390 -0.5 -1.3 hypothetical protein compare
BWI76_RS15825 -0.5 -0.9 hypothetical protein compare
BWI76_RS01870 -0.5 -2.5 diacylglycerol kinase compare
BWI76_RS13245 -0.5 -1.6 DNA-damage-inducible protein I compare
BWI76_RS10465 -0.5 -2.0 hypothetical protein compare
BWI76_RS15260 -0.5 -1.0 hypothetical protein compare
BWI76_RS07470 -0.5 -1.4 MBL fold metallo-hydrolase compare
BWI76_RS18755 -0.5 -0.7 adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase compare
BWI76_RS04210 -0.5 -2.1 hypothetical protein compare
BWI76_RS14665 -0.5 -2.1 minor fimbrial subunit YfcQ compare
BWI76_RS09655 -0.5 -1.3 leucine-responsive regulatory protein compare
BWI76_RS08600 -0.5 -2.3 3-deoxy-7-phosphoheptulonate synthase compare
BWI76_RS11105 -0.5 -1.4 aminodeoxychorismate lyase compare
BWI76_RS06475 -0.5 -0.6 protoheme IX farnesyltransferase compare
BWI76_RS17400 -0.5 -0.8 transporter compare
BWI76_RS08510 -0.5 -1.3 cyd operon protein YbgE compare
BWI76_RS21580 -0.5 -0.6 SsrA-binding protein compare
BWI76_RS09030 -0.5 -2.5 transpeptidase compare
BWI76_RS12745 -0.5 -1.2 putative prophage membrane protein compare
BWI76_RS20800 -0.5 -1.4 carboxysome shell protein compare
BWI76_RS12155 -0.5 -1.1 hypothetical protein compare
BWI76_RS20940 -0.5 -1.6 uracil/xanthine transporter compare
BWI76_RS12210 -0.5 -2.7 hypothetical protein compare
BWI76_RS09195 -0.5 -0.6 N-acetyltransferase compare
BWI76_RS19195 -0.5 -1.9 nickel ABC transporter permease compare
BWI76_RS23895 -0.5 -0.6 Xaa-Pro aminopeptidase compare
BWI76_RS18455 -0.5 -0.9 tRNA-Ser compare
BWI76_RS25315 -0.5 -4.0 glutamate synthase large subunit compare
BWI76_RS24315 -0.5 -2.3 cell division protein FtsP compare
BWI76_RS24120 -0.5 -2.0 YggW family oxidoreductase compare
BWI76_RS04100 -0.5 -2.0 peptide chain release factor 3 compare
BWI76_RS02545 -0.5 -2.4 protease modulator HflK compare
BWI76_RS20385 -0.5 -2.1 aspartate-semialdehyde dehydrogenase compare
BWI76_RS02365 -0.5 -2.2 hypothetical protein compare


Specific Phenotypes

For 1 genes in this experiment

For mixed community sand in Klebsiella michiganensis M5al

For mixed community sand across organisms