Experiment set9IT045 for Methanococcus maripaludis S2

Compare to:

H2 McCas with 10 mM polysulfide

200 most important genes:

  gene name fitness t score description  
MMP_RS08720 -5.8 -2.2 4Fe-4S binding protein compare
MMP_RS03315 -5.6 -1.8 ferrous iron transport protein A compare
MMP_RS08440 -5.3 -4.5 cell division protein SepF compare
MMP_RS01175 -5.0 -5.3 triphosphoribosyl-dephospho-CoA synthase compare
MMP_RS02145 -4.9 -14.0 winged helix-turn-helix transcriptional regulator compare
MMP_RS06315 -4.8 -1.3 cobalt-precorrin-7 (C(5))-methyltransferase compare
MMP_RS01795 -4.8 -2.5 methanogenesis marker 6 protein compare
MMP_RS04720 -4.7 -4.6 DedA family protein compare
MMP_RS03700 -4.7 -12.4 sodium:proton antiporter compare
MMP_RS00515 -4.4 -1.7 DUF655 domain-containing protein compare
MMP_RS05920 -4.2 -1.1 50S ribosomal protein L37e compare
MMP_RS07390 -4.1 -4.8 cell division protein FtsZ compare
MMP_RS06895 -3.9 -2.6 selenocysteine-specific translation elongation factor compare
MMP_RS06350 -3.9 -10.0 HesA/MoeB/ThiF family protein compare
MMP_RS08715 -3.8 -2.7 formylmethanofuran dehydrogenase subunit B compare
MMP_RS04775 -3.8 -5.4 adenosylhomocysteinase compare
MMP_RS07635 -3.8 -8.8 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMP_RS03580 -3.8 -4.8 signal recognition particle-docking protein FtsY compare
MMP_RS01875 -3.8 -15.3 N-acetyltransferase compare
MMP_RS07005 -3.7 -1.0 4Fe-4S binding protein compare
MMP_RS06400 -3.7 -2.3 4Fe-4S binding protein compare
MMP_RS01880 -3.7 -11.5 DegT/DnrJ/EryC1/StrS family aminotransferase compare
MMP_RS07380 -3.7 -3.6 transcription elongation factor Spt5 compare
MMP_RS03435 -3.7 -2.7 ketol-acid reductoisomerase compare
MMP_RS02010 -3.6 -13.9 PHP domain-containing protein compare
MMP_RS08790 -3.6 -3.5 translation initiation factor IF-2 subunit alpha compare
MMP_RS01885 -3.6 -14.9 Gfo/Idh/MocA family oxidoreductase compare
MMP_RS05930 -3.6 -3.8 3-isopropylmalate dehydratase large subunit compare
MMP_RS03110 -3.6 -6.5 glycosyltransferase family 2 protein compare
MMP_RS09020 -3.6 -2.8 hypothetical protein compare
MMP_RS03035 -3.5 -6.0 4-hydroxy-tetrahydrodipicolinate synthase compare
MMP_RS01925 -3.5 -13.1 DUF1616 domain-containing protein compare
MMP_RS04685 -3.5 -4.1 DUF126 domain-containing protein compare
MMP_RS06670 -3.5 -7.1 glucose-6-phosphate isomerase compare
MMP_RS05515 -3.4 -7.1 cyclic pyranopterin monophosphate synthase MoaC compare
MMP_RS07075 -3.4 -5.1 phosphomannomutase/phosphoglucomutase compare
MMP_RS02195 -3.4 -5.2 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase compare
MMP_RS06885 -3.4 -3.6 50S ribosome-binding GTPase compare
MMP_RS06730 -3.4 -2.9 phosphopantothenate/pantothenate synthetase compare
MMP_RS03015 -3.4 -12.5 GTP 3' 8-cyclase MoaA compare
MMP_RS01905 -3.3 -17.8 glycosyltransferase compare
MMP_RS01890 -3.3 -7.0 nucleotide sugar dehydrogenase compare
MMP_RS01900 -3.3 -19.1 hypothetical protein compare
MMP_RS06120 -3.3 -3.4 UPF0147 family protein compare
MMP_RS06110 -3.3 -4.0 ATP-dependent protease LonB compare
MMP_RS05250 -3.3 -3.0 NFYB/HAP3 family transcription factor subunit compare
MMP_RS01005 -3.2 -2.1 riboflavin synthase compare
MMP_RS03475 -3.2 -1.0 hypothetical protein compare
MMP_RS03025 -3.2 -5.7 molybdenum cofactor guanylyltransferase compare
MMP_RS04890 -3.1 -1.6 adenylyltransferase/cytidyltransferase family protein compare
MMP_RS03600 -3.1 -3.0 triose-phosphate isomerase compare
MMP_RS06625 -3.1 -3.6 DNA primase compare
MMP_RS01725 -3.1 -7.2 class I SAM-dependent methyltransferase family protein compare
MMP_RS01700 -3.1 -1.4 dihydroxy-acid dehydratase compare
MMP_RS04710 -3.0 -2.9 hypothetical protein compare
MMP_RS06355 -3.0 -3.9 molybdenum cofactor biosynthesis protein MoaE compare
MMP_RS06295 -2.9 -8.1 methanogenesis marker 14 protein compare
MMP_RS07750 -2.9 -7.1 DUF357 domain-containing protein compare
MMP_RS05550 -2.9 -1.1 cation:proton antiporter compare
MMP_RS07605 -2.9 -5.3 diadenylate cyclase compare
MMP_RS08435 -2.9 -2.7 Era-like GTP-binding protein compare
MMP_RS02240 -2.8 -3.7 methanogenesis marker 7 protein compare
MMP_RS05640 -2.8 -9.1 UTP--glucose-1-phosphate uridylyltransferase GalU compare
MMP_RS06975 -2.8 -3.0 sulfide-dependent adenosine diphosphate thiazole synthase compare
MMP_RS01380 -2.8 -6.7 PHP domain-containing protein compare
MMP_RS00300 -2.8 -1.2 6 7-dimethyl-8-ribityllumazine synthase compare
MMP_RS00040 -2.8 -5.5 TIGR03576 family pyridoxal phosphate-dependent enzyme compare
MMP_RS03400 -2.8 -4.0 archease compare
MMP_RS06270 -2.8 -8.3 TIGR00300 family protein compare
MMP_RS08745 -2.7 -6.1 CDP-2 3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMP_RS07755 -2.7 -2.0 DUF555 domain-containing protein compare
MMP_RS04780 -2.7 -3.2 ribonuclease P compare
MMP_RS01895 -2.7 -17.4 flippase compare
MMP_RS01325 -2.7 -3.2 dihydroneopterin aldolase family protein compare
MMP_RS05555 -2.7 -2.0 DUF4040 domain-containing protein compare
MMP_RS01265 -2.6 -4.4 hypothetical protein compare
MMP_RS07580 -2.6 -3.8 DUF356 domain-containing protein compare
MMP_RS06980 -2.6 -11.5 tRNA 2-thiocytidine biosynthesis TtcA family protein compare
MMP_RS00695 -2.6 -1.3 biotin--[acetyl-CoA-carboxylase] ligase compare
MMP_RS01545 -2.5 -1.7 CBS domain-containing protein compare
MMP_RS01385 -2.5 -0.9 imidazole glycerol phosphate synthase subunit HisH compare
MMP_RS04090 -2.5 -4.4 hypothetical protein compare
MMP_RS03445 -2.5 -1.4 methanogenesis marker 17 protein compare
MMP_RS01225 -2.5 -5.8 DUF5379 domain-containing protein compare
MMP_RS00895 -2.5 -4.5 hypothetical protein compare
MMP_RS03640 -2.5 -4.6 archaeal proteasome endopeptidase complex subunit beta compare
MMP_RS00110 -2.5 -3.0 hypothetical protein compare
MMP_RS08820 -2.4 -6.7 hypothetical protein compare
MMP_RS06940 -2.4 -4.1 polyprenyl diphosphate synthase compare
MMP_RS01755 -2.4 -1.8 DUF2097 domain-containing protein compare
MMP_RS07420 -2.4 -4.9 metalloregulator ArsR/SmtB family transcription factor compare
MMP_RS01910 -2.4 -11.8 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
MMP_RS02135 -2.4 -6.7 DUF5612 domain-containing protein compare
MMP_RS03095 -2.4 -7.4 diphthine synthase compare
MMP_RS05345 -2.3 -10.8 hypothetical protein compare
MMP_RS04585 -2.3 -10.8 AIR synthase related protein compare
MMP_RS05265 -2.3 -3.4 2-isopropylmalate synthase compare
MMP_RS02800 -2.3 -6.1 nucleotidyltransferase domain-containing protein compare
MMP_RS01720 -2.3 -1.6 replication factor C large subunit compare
MMP_RS01830 -2.3 -2.2 tRNA-Val compare
MMP_RS00810 -2.3 -8.1 topoisomerase DNA-binding C4 zinc finger domain-containing protein compare
MMP_RS03960 -2.3 -1.5 hypothetical protein compare
MMP_RS06285 -2.3 -2.6 precorrin-6Y C5 15-methyltransferase (decarboxylating) subunit CbiT compare
MMP_RS00900 -2.3 -2.7 50S ribosomal protein L39e compare
MMP_RS08650 -2.3 -4.1 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
MMP_RS06340 -2.2 -6.9 phosphoadenosine phosphosulfate reductase family protein compare
MMP_RS01220 -2.2 -7.2 hypothetical protein compare
MMP_RS01020 -2.2 -1.4 3 4-dihydroxy-2-butanone-4-phosphate synthase compare
MMP_RS00985 -2.2 -5.3 CDC48 family AAA ATPase compare
MMP_RS01800 -2.2 -4.5 TIGR00303 family protein compare
MMP_RS06020 -2.2 -4.8 archaeoflavoprotein AfpA compare
MMP_RS06900 -2.2 -2.7 coenzyme F420-reducing hydrogenase FrhD protein compare
MMP_RS02345 -2.2 -3.2 GTP-dependent dephospho-CoA kinase family protein compare
MMP_RS08635 -2.2 -2.5 UbiA family prenyltransferase compare
MMP_RS02900 -2.2 -0.9 imidazoleglycerol-phosphate dehydratase HisB compare
MMP_RS01960 -2.2 -1.4 hypothetical protein compare
MMP_RS07545 -2.1 -1.5 HTH domain-containing protein compare
MMP_RS01500 -2.1 -3.3 CBS domain-containing protein compare
MMP_RS06230 -2.1 -3.9 helix-turn-helix domain-containing protein compare
MMP_RS07875 -2.1 -7.2 hypothetical protein compare
MMP_RS05580 -2.1 -13.0 glycosyltransferase compare
MMP_RS03145 -2.1 -9.0 fibrillarin-like rRNA/tRNA 2'-O-methyltransferase compare
MMP_RS06925 -2.1 -3.5 ribonuclease VapC4 compare
MMP_RS00305 -2.0 -2.1 phosphoribosyl-ATP diphosphatase compare
MMP_RS06105 -2.0 -8.0 hydrogenase maturation peptidase HycI compare
MMP_RS07710 -2.0 -8.2 cell division protein FtsZ compare
MMP_RS06630 -2.0 -1.6 UPF0058 family protein compare
MMP_RS08300 -2.0 -1.7 metal-sulfur cluster assembly factor compare
MMP_RS08210 -2.0 -2.6 phosphatidylglycerophosphatase A compare
MMP_RS01955 -2.0 -4.6 hypothetical protein compare
MMP_RS01240 -2.0 -2.1 7-cyano-7-deazaguanine synthase QueC compare
MMP_RS07330 -2.0 -15.1 membrane protein compare
MMP_RS02875 -2.0 -8.8 chorismate pyruvate-lyase family protein compare
MMP_RS00685 -2.0 -4.9 2-phospho-L-lactate guanylyltransferase compare
MMP_RS03205 -2.0 -2.3 peptidyl-tRNA hydrolase Pth2 compare
MMP_RS06395 -2.0 -4.2 ThiF family adenylyltransferase compare
MMP_RS06725 -1.9 -10.1 hypothetical protein compare
MMP_RS01915 -1.9 -12.6 DUF354 domain-containing protein compare
MMP_RS07730 -1.9 -2.0 pyruvate synthase subunit beta compare
MMP_RS05500 -1.9 -7.0 2-isopropylmalate synthase compare
MMP_RS02355 -1.9 -3.2 30S ribosomal protein S27ae compare
MMP_RS04500 -1.9 -12.3 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
MMP_RS01610 -1.9 -3.9 hypothetical protein compare
MMP_RS08460 -1.9 -2.2 proteasome-activating nucleotidase compare
MMP_RS01575 -1.9 -5.0 aldolase compare
MMP_RS08595 -1.9 -1.6 flagellar protein C compare
MMP_RS01335 -1.9 -2.6 prefoldin subunit beta compare
MMP_RS08100 -1.8 -6.6 8-amino-7-oxononanoate synthase compare
MMP_RS03140 -1.8 -8.7 hypothetical protein compare
MMP_RS06130 -1.8 -4.3 peptidylprolyl isomerase compare
MMP_RS01840 -1.8 -9.3 TIGR00289 family protein compare
MMP_RS06035 -1.8 -9.0 glycosyltransferase family 2 protein compare
MMP_RS07845 -1.8 -2.5 LL-diaminopimelate aminotransferase compare
MMP_RS06475 -1.8 -5.7 FAD-dependent oxidoreductase compare
MMP_RS05425 -1.8 -4.0 monovalent cation/H+ antiporter complex subunit F compare
MMP_RS00130 -1.8 -1.3 nickel-responsive transcriptional regulator NikR compare
MMP_RS05635 -1.8 -8.4 NAD-dependent epimerase/dehydratase family protein compare
MMP_RS00750 -1.7 -2.1 fumarate hydratase compare
MMP_RS03155 -1.7 -7.7 precorrin-6A reductase compare
MMP_RS00735 -1.7 -4.3 5 10-methenyltetrahydromethanopterin hydrogenase compare
MMP_RS05845 -1.7 -1.5 tRNA-intron lyase compare
MMP_RS08605 -1.7 -5.2 flagellar protein E compare
MMP_RS07625 -1.7 -3.4 cobalt ECF transporter T component CbiQ compare
MMP_RS08095 -1.7 -5.9 dethiobiotin synthase compare
MMP_RS07200 -1.7 -6.6 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase compare
MMP_RS01975 -1.7 -12.3 hypothetical protein compare
MMP_RS08785 -1.6 -1.3 RNA-protein complex protein Nop10 compare
MMP_RS07955 -1.6 -4.3 FumA C-terminus/TtdB family hydratase beta subunit compare
MMP_RS01365 -1.6 -2.3 archaeal proteasome endopeptidase complex subunit alpha compare
MMP_RS00050 -1.6 -5.8 AarF/UbiB family protein compare
MMP_RS08155 -1.6 -6.9 hypothetical protein compare
MMP_RS06370 -1.6 -4.7 biotin synthase BioB compare
MMP_RS08105 -1.6 -6.6 6-carboxyhexanoate--CoA ligase compare
MMP_RS07615 -1.5 -8.4 energy-coupling factor ABC transporter permease compare
MMP_RS05815 -1.5 -1.6 NOL1/NOP2/sun family putative RNA methylase compare
MMP_RS02280 -1.5 -0.8 DUF211 domain-containing protein compare
MMP_RS05525 -1.5 -5.7 calcium/sodium antiporter compare
MMP_RS07355 -1.5 -1.1 transcription factor S compare
MMP_RS07600 -1.5 -2.4 Ni-sirohydrochlorin a c-diamide synthase compare
MMP_RS07575 -1.5 -3.4 RNA ligase partner protein compare
MMP_RS06310 -1.5 -3.6 NAD(P)/FAD-dependent oxidoreductase compare
MMP_RS02245 -1.5 -3.1 hypothetical protein compare
MMP_RS01045 -1.5 -7.3 diphthamide biosynthesis enzyme Dph2 compare
MMP_RS05540 -1.4 -3.4 hypothetical protein compare
MMP_RS04955 -1.4 -4.7 DNA topoisomerase I compare
MMP_RS00315 -1.4 -4.2 Nif3-like dinuclear metal center hexameric protein compare
MMP_RS00720 -1.4 -6.0 metal-dependent hydrolase compare
MMP_RS01970 -1.4 -9.0 TIGR04279 domain-containing protein compare
MMP_RS08660 -1.4 -6.7 DHH family phosphoesterase compare
MMP_RS07695 -1.4 -3.3 DUF3236 domain-containing protein compare
MMP_RS04850 -1.4 -9.0 UPF0254 family protein compare
MMP_RS05445 -1.4 -6.1 CoB--CoM heterodisulfide reductase subunit B compare
MMP_RS08330 -1.4 -5.8 NADH-quinone oxidoreductase subunit H compare
MMP_RS08165 -1.3 -1.1 phosphoglycerate dehydrogenase compare
MMP_RS07525 -1.3 -5.2 4Fe-4S binding protein compare
MMP_RS08600 -1.3 -2.4 flagellar protein D compare
MMP_RS05295 -1.3 -8.1 minichromosome maintenance protein MCM compare
MMP_RS07700 -1.3 -5.2 DUF1188 domain-containing protein compare
MMP_RS00115 -1.2 -8.2 radical SAM protein compare
MMP_RS00320 -1.2 -1.9 class I SAM-dependent methyltransferase compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis S2 in stress experiments

For stress potassium (poly)sulfide across organisms