Experiment set9IT041 for Pseudomonas syringae pv. syringae B728a

Compare to:

KB with Avocatin A 10 mM

200 most important genes:

  gene name fitness t score description  
Psyr_0951 -5.5 -3.8 UBA/THIF-type NAD/FAD binding fold:MoeZ/MoeB compare
Psyr_1544 -3.9 -4.6 SirA-like protein compare
Psyr_4740 -3.7 -8.3 thiazole-phosphate synthase compare
Psyr_4340 -3.6 -10.4 phosphomethylpyrimidine kinase, putative compare
Psyr_4341 -3.3 -8.5 thiamine-phosphate diphosphorylase compare
Psyr_1613 -3.1 -5.9 septum site-determining protein MinC compare
Psyr_1373 -3.0 -5.0 Peptidoglycan-binding LysM:Peptidase M23B compare
Psyr_5132 -2.8 -3.7 Glucose-inhibited division protein A subfamily compare
Psyr_0034 -2.8 -3.8 tryptophan synthase, beta chain compare
Psyr_1419 -2.8 -4.9 preQ(0) biosynthesis protein QueC compare
Psyr_0454 -2.7 -6.7 adenosylmethionine-8-amino-7-oxononanoate aminotransferase apoenzyme compare
Psyr_4566 -2.7 -8.5 Peptidase M23B compare
Psyr_4519 -2.7 -8.6 General substrate transporter:Major facilitator superfamily compare
Psyr_0529 -2.6 -6.3 Glycosyl transferase, group 1 compare
Psyr_4683 -2.5 -6.2 dethiobiotin synthase compare
Psyr_4091 -2.5 -4.7 8-oxo-dGTPase compare
Psyr_0475 -2.4 -3.6 Protein of unknown function YGGT compare
Psyr_0735 -2.4 -2.8 Peptidase S24, S26A and S26B compare
Psyr_1410 -2.4 -5.0 Holliday junction DNA helicase RuvB compare
Psyr_1408 -2.4 -3.5 Holliday junction endonuclease RuvC compare
Psyr_0255 -2.4 -2.8 glutamate-cysteine ligase compare
Psyr_4687 -2.3 -9.0 biotin synthase compare
Psyr_2980 -2.3 -4.8 UDP-glucose pyrophosphorylase compare
Psyr_0033 -2.3 -2.7 tryptophan synthase, alpha chain compare
Psyr_3673 -2.3 -2.5 Phosphoglycerate/bisphosphoglycerate mutase compare
Psyr_4686 -2.2 -7.1 8-amino-7-oxononanoate synthase compare
Psyr_4203 -2.1 -2.7 SsrA-binding protein compare
Psyr_3208 -2.1 -2.8 NADH dehydrogenase subunit M compare
Psyr_0535 -2.0 -3.5 toluene tolerance protein, putative compare
Psyr_3691 -1.9 -5.8 conserved hypothetical protein compare
Psyr_4350 -1.9 -3.4 Protein of unknown function DUF218 compare
Psyr_3419 -1.9 -5.1 4Fe-4S ferredoxin, iron-sulfur binding protein compare
Psyr_0531 -1.9 -3.4 LmbE-like protein compare
Psyr_2112 -1.8 -2.5 Protein with unknown function DUF469 compare
Psyr_1747 -1.7 -4.2 ATP-dependent Clp protease proteolytic subunit ClpP compare
Psyr_1268 -1.7 -5.7 extracellular solute-binding protein, family 3:SLT compare
Psyr_4808 -1.7 -1.1 conserved hypothetical protein compare
Psyr_0383 -1.7 -1.1 Twin-arginine translocation protein TatB compare
Psyr_1663 -1.7 -3.5 phosphoribosylanthranilate isomerase compare
Psyr_3199 -1.6 -2.8 NADH dehydrogenase subunit D / NADH dehydrogenase subunit C compare
Psyr_1371 -1.6 -5.8 5'-nucleotidase / exopolyphosphatase / 3'-nucleotidase compare
Psyr_0487 -1.6 -2.6 glutathione synthase compare
Psyr_3701 -1.6 -2.3 thioredoxin, putative compare
Psyr_1633 -1.6 -1.4 MotA/TolQ/ExbB proton channel compare
Psyr_3886 -1.6 -2.2 methionyl-tRNA synthetase compare
Psyr_1910 -1.6 -4.7 VacJ-like lipoprotein compare
Psyr_0281 -1.6 -2.5 ABC transporter compare
Psyr_4362 -1.6 -3.3 Rare lipoprotein A compare
Psyr_0549 -1.5 -1.8 Metallophosphoesterase compare
Psyr_3459 -1.5 -2.8 Helix-turn-helix, Fis-type compare
Psyr_2591 -1.5 -4.6 transport system permease protein compare
Psyr_2854 -1.5 -4.8 conserved hypothetical protein compare
Psyr_3289 -1.5 -3.7 3-ketoacyl-CoA thiolase compare
Psyr_0574 -1.5 -4.4 protease FtsH subunit HflK compare
Psyr_0835 -1.5 -5.4 transcriptional regulator, TraR/DksA family compare
Psyr_3287 -1.5 -2.3 DNA topoisomerase I compare
Psyr_1251 -1.4 -3.5 quinoprotein compare
Psyr_2069 -1.4 -2.4 conserved hypothetical protein compare
Psyr_3193 -1.4 -2.9 Transcription factor jumonji, jmjC compare
Psyr_0784 -1.4 -2.4 CheW-like protein compare
Psyr_1138 -1.4 -1.1 GCN5-related N-acetyltransferase compare
Psyr_2590 -1.4 -1.8 Periplasmic binding protein compare
Psyr_1294 -1.4 -3.3 regulatory protein, LuxR:Response regulator receiver compare
Psyr_4580 -1.3 -3.3 anthranilate phosphoribosyltransferase compare
Psyr_5072 -1.3 -1.3 Cobalamin synthesis protein/P47K:Cobalamin synthesis protein/P47K compare
Psyr_4684 -1.3 -2.5 biotin synthesis protein BioC compare
Psyr_4627 -1.3 -2.4 dimethyladenosine transferase compare
Psyr_1816 -1.3 -3.0 transcriptional regulator, GntR family compare
Psyr_5102 -1.3 -1.4 ABC transporter compare
Psyr_2594 -1.3 -1.4 unknown conserved protein in bacilli compare
Psyr_5135 -1.3 -0.7 Protein of unknown function DUF37 compare
Psyr_2767 -1.2 -2.4 Glycoside hydrolase, family 19 compare
Psyr_4991 -1.2 -1.9 hypothetical protein compare
Psyr_0215 -1.2 -6.4 Exodeoxyribonuclease III xth compare
Psyr_3776 -1.2 -3.4 Cytosine deaminase compare
Psyr_4754 -1.2 -1.5 16S rRNA m(2)G-966 methyltransferase compare
Psyr_2095 -1.2 -3.6 Conserved TM helix compare
Psyr_3198 -1.2 -1.5 NADH dehydrogenase subunit B compare
Psyr_0528 -1.2 -2.2 Carbamoyltransferase compare
Psyr_3013 -1.2 -1.5 magnesium chelatase subunit ChlD compare
Psyr_3842 -1.2 -4.6 SNF2-related:Helicase, C-terminal:Type III restriction enzyme, res subunit compare
Psyr_1167 -1.2 -3.5 nucleoside ABC transporter membrane protein compare
Psyr_2868 -1.2 -3.2 Response regulator receiver:Transcriptional regulatory protein, C-terminal compare
Psyr_3007 -1.2 -2.4 Protein of unknown function DUF1294 compare
Psyr_0917 -1.1 -7.2 ABC-2 compare
Psyr_2347 -1.1 -2.4 hypothetical protein compare
Psyr_1864 -1.1 -2.8 spermidine synthase compare
Psyr_2348 -1.1 -2.6 hypothetical protein compare
Psyr_0524 -1.1 -2.2 Lipopolysaccharide kinase compare
Psyr_4408 -1.1 -4.9 Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal:Histidine kinase:Histidine kinase compare
Psyr_2592 -1.1 -2.9 transport system permease protein compare
Psyr_2582 -1.1 -5.9 TonB-dependent siderophore receptor compare
Psyr_4418 -1.1 -1.6 Precorrin-6Y C5,15-methyltransferase (decarboxylating) compare
Psyr_1227 -1.1 -2.2 Queuosine biosynthesis protein compare
Psyr_3282 -1.1 -4.4 transcriptional regulator, TetR family compare
Psyr_5067 -1.1 -3.3 conserved hypothetical protein compare
Psyr_5133 -1.1 -2.9 tRNA modification GTPase trmE compare
Psyr_4895 -1.1 -2.1 conserved hypothetical protein compare
Psyr_0918 -1.0 -7.5 ABC transporter compare
Psyr_0070 -1.0 -1.8 hypothetical protein compare
Psyr_3241 -1.0 -3.1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region:D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding protein compare
Psyr_4582 -1.0 -1.1 hypothetical protein compare
Psyr_1417 -1.0 -3.8 TPR repeat protein compare
Psyr_4512 -1.0 -4.6 putative phage-related protein compare
Psyr_2285 -1.0 -1.3 Twin-arginine translocation pathway signal compare
Psyr_0633 -1.0 -2.4 conserved hypothetical protein compare
Psyr_2150 -1.0 -2.3 protein of unknown function DUF903 compare
Psyr_0579 -1.0 -6.0 RNAse R compare
Psyr_3610 -1.0 -1.3 GAF compare
Psyr_0134 -1.0 -2.6 Aminotransferase, class V compare
Psyr_4141 -1.0 -3.2 ABC transporter compare
Psyr_1645 -1.0 -2.4 phosphate:acyl-[acyl carrier protein] acyltransferase compare
Psyr_1304 -1.0 -2.0 CheW-like protein compare
Psyr_2141 -1.0 -1.9 hypothetical protein compare
Psyr_4138 -1.0 -2.2 Toluene tolerance compare
Psyr_4623 -1.0 -6.2 Aminoglycoside phosphotransferase compare
Psyr_2573 -1.0 -2.1 transcriptional regulator, DeoR family compare
Psyr_4139 -0.9 -3.3 Mce4/Rv3499c/MTV023.06c protein compare
Psyr_0081 -0.9 -1.4 ABC transporter compare
Psyr_3358 -0.9 -2.3 transmembrane pair compare
Psyr_4688 -0.9 -2.5 Phosphoribosyltransferase compare
Psyr_3954 -0.9 -2.7 GTP-binding protein LepA compare
Psyr_4194 -0.9 -3.1 DnaJ central region:Heat shock protein DnaJ, N-terminal:Chaperone DnaJ, C-terminal compare
Psyr_1483 -0.9 -2.7 hypothetical protein compare
Psyr_1751 -0.9 -2.9 PpiC-type peptidyl-prolyl cis-trans isomerase compare
Psyr_0724 -0.9 -1.2 conserved hypothetical protein compare
Psyr_1952 -0.9 -1.6 hypothetical protein compare
Psyr_0014 -0.9 -0.6 lipid A biosynthesis acyltransferase compare
Psyr_1588 -0.9 -2.4 Putative exonuclease, RdgC compare
Psyr_3906 -0.9 -1.3 regulatory protein, DeoR compare
Psyr_4843 -0.9 -3.5 NUDIX hydrolase compare
Psyr_0184 -0.9 -1.8 Protein of unknown function DUF484 compare
Psyr_5065 -0.9 -5.0 ATP-dependent DNA helicase UvrD compare
Psyr_0914 -0.9 -5.7 Glycosyl transferase, group 1 compare
Psyr_4143 -0.9 -1.6 HAD-superfamily hydrolase, subfamily IIIA:Phosphatase YrbI compare
Psyr_3760 -0.9 -3.8 VacJ-like lipoprotein compare
Psyr_0936 -0.9 -6.7 Glycosyl transferase, group 1 compare
Psyr_4424 -0.9 -3.8 Propeptide, PepSY amd peptidase M4:PepSY-associated TM helix compare
Psyr_3841 -0.9 -1.6 conserved hypothetical protein compare
Psyr_3597 -0.9 -1.0 ABC transporter compare
Psyr_3675 -0.9 -2.1 adenosylcobinamide kinase compare
Psyr_4134 -0.9 -3.8 ATP phosphoribosyltransferase (homohexameric) compare
Psyr_4967 -0.9 -2.4 conserved hypothetical protein compare
Psyr_4622 -0.9 -2.1 Nucleotidyl transferase compare
Psyr_3395 -0.9 -2.1 FlhB domain protein compare
Psyr_3596 -0.9 -2.1 Selenoprotein W-related protein compare
Psyr_2144 -0.9 -1.3 conserved hypothetical protein compare
Psyr_1885 -0.9 -1.3 hypothetical protein compare
Psyr_2143 -0.9 -1.7 delta1-piperideine 2-carboxylate reductase compare
Psyr_0983 -0.9 -3.6 Protein of unknown function DUF159 compare
Psyr_3015 -0.9 -4.2 cobaltochelatase CobN subunit compare
Psyr_3601 -0.9 -1.1 conserved hypothetical protein compare
Psyr_2266 -0.8 -2.1 Binding-protein-dependent transport systems inner membrane component compare
Psyr_3310 -0.8 -3.8 transferase hexapeptide repeat protein compare
Psyr_4262 -0.8 -1.0 lipoprotein, putative compare
Psyr_2540 -0.8 -1.1 Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal compare
Psyr_4078 -0.8 -5.5 AmpG-related permease compare
Psyr_3290 -0.8 -1.9 3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase compare
Psyr_4151 -0.8 -1.0 Phosphocarrier HPr protein compare
Psyr_1953 -0.8 -0.8 conserved hypothetical protein compare
Psyr_3020 -0.8 -1.3 precorrin-4 C11-methyltransferase compare
Psyr_3357 -0.8 -2.5 transcriptional regulator, LysR family compare
Psyr_0772 -0.8 -2.2 Protein of unknown function DUF1355 compare
Psyr_3835 -0.8 -1.5 hypothetical protein compare
Psyr_3904 -0.8 -4.0 Major intrinsic protein compare
Psyr_0268 -0.8 -1.2 DSBA oxidoreductase compare
Psyr_4116 -0.8 -1.0 Transport-associated protein compare
Psyr_1280 -0.8 -2.7 Cytochrome c assembly protein compare
Psyr_3489 -0.8 -2.0 FlgN compare
Psyr_4089 -0.8 -3.4 PAS compare
Psyr_3759 -0.8 -5.2 conserved hypothetical protein compare
Psyr_0493 -0.8 -1.5 CheW-like protein compare
Psyr_3058 -0.8 -2.2 Amidase compare
Psyr_1630 -0.8 -2.0 ABC transporter compare
Psyr_3905 -0.8 -3.4 glycerol kinase compare
Psyr_2561 -0.8 -1.9 hypothetical protein compare
Psyr_4860 -0.8 -0.8 Integrase, catalytic region compare
Psyr_0793 -0.8 -2.5 conserved hypothetical protein compare
Psyr_1563 -0.8 -3.1 Ribonuclease D compare
Psyr_3627 -0.8 -2.0 OsmC-like protein compare
Psyr_3005 -0.8 -1.5 3-oxoadipate enol-lactonase compare
Psyr_0838 -0.8 -1.5 Rieske [2Fe-2S] region compare
Psyr_3676 -0.8 -2.2 adenosylcobyric acid synthase (glutamine-hydrolysing) compare
Psyr_1614 -0.7 -0.7 lipid A biosynthesis acyltransferase compare
Psyr_3837 -0.7 -1.5 conserved hypothetical protein compare
Psyr_3932 -0.7 -1.6 Cobalamin synthesis protein/P47K:Cobalamin synthesis protein/P47K compare
Psyr_3947 -0.7 -1.3 Methyltransferase, putative compare
Psyr_0849 -0.7 -4.4 CDP-diacylglycerol--serine O-phosphatidyltransferase compare
Psyr_0571 -0.7 -2.3 tRNA isopentenyltransferase compare
Psyr_2566 -0.7 -2.2 dihydroxyacetone kinase DhaK subunit compare
Psyr_3862 -0.7 -1.4 conserved hypothetical protein compare
Psyr_1642 -0.7 -1.5 Maf-like protein compare
Psyr_1017 -0.7 -1.1 type III effector HopJ1 compare
Psyr_4419 -0.7 -2.5 Cobalamin (vitamin B12) biosynthesis CbiD protein compare
Psyr_4655 -0.7 -2.5 hypothetical protein compare
Psyr_4158 -0.7 -3.9 conserved hypothetical protein compare
Psyr_1097 -0.7 -1.3 glycine cleavage system H protein compare
Psyr_1714 -0.7 -2.2 exonuclease SbcC compare
Psyr_3889 -0.7 -1.5 conserved hypothetical protein compare
Psyr_2508 -0.7 -2.4 transcriptional regulator, IclR family compare


Specific Phenotypes

None in this experiment

For Pseudomonas syringae pv. syringae B728a in stress experiments

For stress Avocatin A across organisms