Experiment set9IT040 for Phaeobacter inhibens DSM 17395

Compare to:

marine broth 30C

Group: temperature
Media: marine_broth_2216
Culturing: Phaeo_ML1, tube, Aerobic, at 30 (C), shaken=200 rpm
Growth: about 7.7 generations
By: Mark on 1/26/2015
Media components: 5 g/L Bacto Peptone, 1 g/L Yeast Extract, 0.1 g/L Ferric citrate, 19.45 g/L Sodium Chloride, 5.9 g/L Magnesium chloride hexahydrate, 3.24 g/L Magnesium sulfate, 1.8 g/L Calcium chloride, 0.55 g/L Potassium Chloride, 0.16 g/L Sodium bicarbonate, 0.08 g/L Potassium bromide, 34 mg/L Strontium chloride, 22 mg/L Boric Acid, 4 mg/L Sodium metasilicate, 2.4 mg/L sodium fluoride, 8 mg/L Disodium phosphate

Specific Phenotypes

For 1 genes in this experiment

SEED Subsystems

Subsystem #Specific
Archaeal lipids 1
Isoprenoid Biosynthesis 1
polyprenyl synthesis 1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway #Steps #Present #Specific
all-trans-farnesol biosynthesis 4 3 1
mono-trans, poly-cis decaprenyl phosphate biosynthesis 5 2 1
bisabolene biosynthesis (engineered) 6 3 1
mevalonate pathway I (eukaryotes and bacteria) 7 2 1
mevalonate pathway II (haloarchaea) 7 2 1
mevalonate pathway IV (archaea) 8 2 1
isoprene biosynthesis II (engineered) 8 2 1
mevalonate pathway III (Thermoplasma) 8 2 1
methylerythritol phosphate pathway II 9 9 1
methylerythritol phosphate pathway I 9 9 1
isoprene biosynthesis I 10 9 1
superpathway of geranylgeranyldiphosphate biosynthesis I (via mevalonate) 10 5 1
superpathway of geranylgeranyl diphosphate biosynthesis II (via MEP) 12 12 1
taxadiene biosynthesis (engineered) 13 12 1
superpathway of ergosterol biosynthesis II 26 11 1
superpathway of ergosterol biosynthesis I 26 4 1
superpathway of mycolyl-arabinogalactan-peptidoglycan complex biosynthesis 33 14 1
superpathway of cholesterol biosynthesis 38 4 1
Methanobacterium thermoautotrophicum biosynthetic metabolism 56 21 1