Experiment set9IT040 for Paraburkholderia bryophila 376MFSha3.1
Bu1_100
Group: phageMedia: LB + CaCl2, MgSO4 (5mM ), pH=7
Culturing: Burk376_ML3, 48-well_plate, Aerobic, at 30C (C), shaken=700 rpm
By: MM on 5/20/2021
Media components: 10 g/L Tryptone, 5 g/L Yeast Extract, 5 g/L Sodium Chloride
Specific Phenotypes
For 8 genes in this experiment
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| Choline and Betaine Uptake and Betaine Biosynthesis | 1 |
| Heat shock dnaK gene cluster extended | 1 |
| Protein chaperones | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| glycine betaine biosynthesis III (plants) | 3 | 3 | 1 |
| CDP-4-dehydro-3,6-dideoxy-D-glucose biosynthesis | 3 | 1 | 1 |
| alcaligin biosynthesis | 5 | 1 | 1 |
| superpathway of CDP-glucose-derived O-antigen building blocks biosynthesis | 8 | 1 | 1 |