Experiment set9IT038 for Pseudomonas syringae pv. syringae B728a

Compare to:

KB with Helenine 10 mM

200 most detrimental genes:

  gene name fitness t score description  
Psyr_0137 +1.5 3.2 outer membrane transport energization protein ExbD compare
Psyr_3882 +1.3 2.8 conserved hypothetical protein compare
Psyr_4224 +1.2 2.5 conserved hypothetical protein compare
Psyr_1832 +1.1 2.9 Exonuclease compare
Psyr_0857 +1.1 2.2 [SSU ribosomal protein S18P]-alanine acetyltransferase compare
Psyr_3296 +1.1 3.0 MOSC:MOSC, N-terminal beta barrel compare
Psyr_5036 +1.0 3.7 Response regulator receiver compare
Psyr_1852 +1.0 2.4 conserved hypothetical protein compare
Psyr_4155 +1.0 1.6 Protein of unknown function DUF615 compare
Psyr_3555 +1.0 2.5 aspartate kinase compare
Psyr_3583 +1.0 2.7 condensin subunit ScpB compare
Psyr_1975 +1.0 2.0 Integrase, catalytic region compare
Psyr_0426 +0.9 1.7 lipoprotein, putative compare
Psyr_3867 +0.9 1.7 hypothetical protein compare
Psyr_4634 +0.9 1.5 Polynucleotide adenylyltransferase:Metal-dependent phosphohydrolase, HD subdomain protein compare
Psyr_2387 +0.9 3.0 Malate:quinone-oxidoreductase compare
Psyr_0623 +0.9 2.5 Peptidase S24, S26A and S26B compare
Psyr_2039 +0.9 1.4 Fimbrial protein compare
Psyr_3611 +0.9 3.7 Protein of unknown function DUF815 compare
Psyr_2870 +0.9 2.9 CDS compare
Psyr_1447 +0.9 1.8 conserved hypothetical protein compare
Psyr_4920 +0.9 1.6 conserved hypothetical bacteriophage protein compare
Psyr_1992 +0.9 1.8 Zinc-containing alcohol dehydrogenase superfamily compare
Psyr_2501 +0.8 1.9 Hemerythrin compare
Psyr_2628 +0.8 2.9 ABC transporter compare
Psyr_2134 +0.8 1.6 protein of unknown function DUF903 compare
Psyr_1379 +0.8 1.3 Regulatory protein RecX compare
Psyr_3703 +0.8 2.8 Flavodoxin/nitric oxide synthase compare
Psyr_0907 +0.8 2.2 conserved hypothetical protein compare
Psyr_0734 +0.8 2.8 Protein of unknown function DUF159 compare
Psyr_0954 +0.8 1.7 Protein of unknown function UPF0153 compare
Psyr_1591 +0.7 3.6 Glyoxalase/bleomycin resistance protein/dioxygenase compare
Psyr_2225 +0.7 2.0 methenyltetrahydrofolate cyclohydrolase / 5,10-methylenetetrahydrofolate dehydrogenase (NADP+) compare
Psyr_2055 +0.7 3.3 Transglutaminase-like protein compare
Psyr_5029 +0.7 1.2 Rubredoxin-type Fe(Cys)4 protein compare
Psyr_2317 +0.7 2.2 CDS compare
Psyr_2292 +0.7 1.4 L-glutaminase compare
Psyr_4893 +0.7 1.4 imidazole glycerol phosphate synthase subunit hisF compare
Psyr_1844 +0.7 2.4 conserved hypothetical protein compare
Psyr_0142 +0.7 2.3 ABC transporter compare
Psyr_3684 +0.7 1.3 NLP/P60 compare
Psyr_3319 +0.7 3.0 ThiJ/PfpI compare
Psyr_4801 +0.7 1.6 Outer membrane efflux protein compare
Psyr_4175 +0.7 2.5 Transport-associated protein compare
Psyr_1202 +0.7 1.4 negative regulator of hrp expression HrpV compare
Psyr_0447 +0.7 2.1 malonate decarboxylase subunit, putative compare
Psyr_0373 +0.7 1.8 CDS compare
Psyr_3660 +0.7 1.8 conserved hypothetical protein compare
Psyr_2196 +0.6 1.6 Urease accessory protein UreG compare
Psyr_2906 +0.6 1.0 Pilus retraction protein PilT compare
Psyr_2449 +0.6 1.8 Response regulator receiver compare
Psyr_3935 +0.6 2.2 Short-chain dehydrogenase/reductase SDR compare
Psyr_0843 +0.6 3.5 TPR repeat protein compare
Psyr_1829 +0.6 2.2 conserved hypothetical protein compare
Psyr_1217 +0.6 2.0 Sigma-70 region 2:Sigma-70 region 4 compare
Psyr_2987 +0.6 2.2 Cof protein:HAD-superfamily hydrolase, subfamily IIB compare
Psyr_2388 +0.6 2.4 Twin-arginine translocation pathway signal compare
Psyr_1270 +0.6 1.3 conserved hypothetical protein compare
Psyr_2272 +0.6 2.2 Helix-turn-helix motif protein compare
Psyr_0432 +0.6 1.8 conserved hypothetical protein compare
Psyr_1377 +0.6 2.2 CinA, C-terminal compare
Psyr_3262 +0.6 1.2 dnaK suppressor protein, putative compare
Psyr_1875 +0.6 1.8 Enoyl-CoA hydratase/isomerase compare
Psyr_2350 +0.6 1.3 Protein of unknown function UPF0025 compare
Psyr_1334 +0.6 2.2 Cysteine desulfuration protein SufE compare
Psyr_0148 +0.6 1.9 hypothetical protein compare
Psyr_3121 +0.6 1.6 Protein of unknown function DUF1345 compare
Psyr_2116 +0.6 2.9 Deoxyguanosinetriphosphate triphosphohydrolase compare
Psyr_3138 +0.6 2.6 Major facilitator superfamily compare
Psyr_2647 +0.6 3.0 hypothetical protein compare
Psyr_2708 +0.6 2.3 Rieske [2Fe-2S] region compare
Psyr_4902 +0.6 1.6 Protein of unknown function DUF495 compare
Psyr_4487 +0.6 2.0 Carbohydrate kinase, PfkB compare
Psyr_3507 +0.6 1.8 membrane protein, putative compare
Psyr_4754 +0.6 1.2 16S rRNA m(2)G-966 methyltransferase compare
Psyr_3127 +0.6 1.8 Response regulator receiver:Transcriptional regulatory protein, C-terminal compare
Psyr_2243 +0.6 1.5 Endoribonuclease L-PSP compare
Psyr_0927 +0.6 1.9 hypothetical protein compare
Psyr_2867 +0.6 1.7 ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal compare
Psyr_4160 +0.6 2.6 Maf-like protein compare
Psyr_1638 +0.6 0.9 RNAse E compare
Psyr_2737 +0.6 1.8 hypothetical protein compare
Psyr_2253 +0.6 1.7 Phosphonate metabolism compare
Psyr_1678 +0.6 0.9 Hypothetical protein compare
Psyr_3812 +0.6 1.4 CDS compare
Psyr_3787 +0.5 2.5 conserved hypothetical protein compare
Psyr_2073 +0.5 1.4 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase compare
Psyr_0896 +0.5 1.7 Aldose 1-epimerase compare
Psyr_3443 +0.5 2.9 Flagellar biosynthesis protein FliQ compare
Psyr_1888 +0.5 2.8 CDS compare
Psyr_1689 +0.5 2.2 conserved hypothetical protein compare
Psyr_1335 +0.5 2.5 Aminotransferase, class V compare
Psyr_0630 +0.5 2.9 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
Psyr_2757 +0.5 1.4 Binding-protein-dependent transport systems inner membrane component compare
Psyr_3790 +0.5 2.9 conserved hypothetical protein compare
Psyr_0673 +0.5 1.8 nucleoside ABC transporter ATP-binding protein compare
Psyr_1298 +0.5 2.2 exonuclease RecJ compare
Psyr_2820 +0.5 1.2 RecT protein compare
Psyr_3783 +0.5 1.4 conserved hypothetical protein compare
Psyr_1212 +0.5 1.3 type III secretion protein HrpO compare
Psyr_2695 +0.5 1.7 conserved hypothetical protein compare
Psyr_0562 +0.5 1.7 OmpA/MotB compare
Psyr_1152 +0.5 2.4 transcriptional regulator, ArsR family compare
Psyr_3830 +0.5 2.5 3-oxoacyl-[acyl-carrier protein] synthase compare
Psyr_1211 +0.5 2.5 type III secretion protein HrpP compare
Psyr_3213 +0.5 1.3 Propeptide, PepSY amd peptidase M4 compare
Psyr_1687 +0.5 1.4 Rhomboid-like protein compare
Psyr_2434 +0.5 1.3 Carbohydrate kinase, PfkB compare
Psyr_2126 +0.5 1.8 4-carboxymuconolactone decarboxylase compare
Psyr_3702 +0.5 1.2 Arsenate reductase compare
Psyr_4128 +0.5 3.2 sulfate adenylyltransferase subunit 2 compare
Psyr_2894 +0.5 1.3 conserved hypothetical protein compare
Psyr_2362 +0.5 1.6 Silent information regulator protein Sir2 compare
Psyr_1273 +0.5 1.8 NUDIX hydrolase compare
Psyr_0550 +0.5 1.7 Protein of unknown function UPF0227 compare
Psyr_3036 +0.5 1.3 transcriptional regulator, TetR family compare
Psyr_0889 +0.5 1.7 SpoVT/AbrB-like protein compare
Psyr_0845 +0.5 1.7 conserved hypothetical protein compare
Psyr_2667 +0.5 3.0 Transposase Tn3 compare
Psyr_2564 +0.5 1.8 transcriptional regulator, GntR family compare
Psyr_3337 +0.5 1.0 gluconate kinase, SKI family compare
Psyr_4434 +0.5 2.6 GCN5-related N-acetyltransferase compare
Psyr_1633 +0.5 0.9 MotA/TolQ/ExbB proton channel compare
Psyr_2244 +0.5 1.3 DNA topoisomerase III compare
Psyr_4578 +0.5 2.2 conserved hypothetical protein compare
Psyr_0875 +0.5 1.3 outer membrane transport energization protein TonB compare
Psyr_1880 +0.5 2.0 Cytochrome c, class I compare
Psyr_1067 +0.5 1.6 GTP cyclohydrolase subunit MoaC compare
Psyr_4504 +0.5 2.9 carbohydrate ABC transporter membrane protein 2, CUT1 family compare
Psyr_2781 +0.5 1.0 hypothetical protein compare
Psyr_0248 +0.5 1.2 conserved hypothetical protein compare
Psyr_3318 +0.5 2.3 conserved hypothetical protein compare
Psyr_2053 +0.5 1.6 moxR protein, putative compare
Psyr_4114 +0.5 2.5 Protein of unknown function UPF0102 compare
Psyr_3125 +0.5 1.7 Nicotinamidase compare
Psyr_3483 +0.5 2.6 Cyanase compare
Psyr_3091 +0.5 1.6 Response regulator receiver:Transcriptional regulatory protein, C-terminal compare
Psyr_1999 +0.5 1.7 OmpA/MotB compare
Psyr_2918 +0.5 2.4 3-hydroxyacyl-CoA dehydrogenase, C-terminal:3-hydroxyacyl-CoA dehydrogenase, NAD-binding protein compare
Psyr_3748 +0.5 2.3 GCN5-related N-acetyltransferase compare
Psyr_3632 +0.4 1.3 conserved hypothetical protein compare
Psyr_4940 +0.4 0.9 3'(2'),5'-bisphosphate nucleotidase compare
Psyr_2461 +0.4 0.9 Uncharacterized conserved protein UCP030820 compare
Psyr_3610 +0.4 1.0 GAF compare
Psyr_2926 +0.4 2.1 General substrate transporter:Major facilitator superfamily compare
Psyr_3381 +0.4 0.9 RND efflux system, outer membrane lipoprotein, NodT compare
Psyr_2184 +0.4 1.6 Short-chain dehydrogenase/reductase SDR compare
Psyr_3741 +0.4 1.4 Polyphosphate:AMP phosphotransferase compare
Psyr_4978 +0.4 1.8 hypothetical protein compare
Psyr_0818 +0.4 1.5 ampE protein compare
Psyr_0898 +0.4 1.8 TRAP dicarboxylate transporter, DctM subunit compare
Psyr_3662 +0.4 1.7 NAD(P)H dehydrogenase (quinone) compare
Psyr_4113 +0.4 2.9 LppC putative lipoprotein compare
Psyr_1916 +0.4 2.1 Peptidase S24, S26A and S26B compare
Psyr_1547 +0.4 1.6 glycine cleavage system transcriptional repressor compare
Psyr_2401 +0.4 1.2 extracellular solute-binding protein, family 1 compare
Psyr_3176 +0.4 1.6 camphor resistance protein CrcB compare
Psyr_2915 +0.4 1.3 transcriptional regulator, AraC family with amidase-like domain protein compare
Psyr_3083 +0.4 0.9 RND efflux system, outer membrane lipoprotein, NodT compare
Psyr_2787 +0.4 0.9 hypothetical protein compare
Psyr_3120 +0.4 1.3 D-glucarate dehydratase compare
Psyr_1987 +0.4 0.8 2-keto-3-deoxygalactonate kinase compare
Psyr_1811 +0.4 1.1 transcriptional regulator, GntR family compare
Psyr_2904 +0.4 2.2 Binding-protein-dependent transport systems inner membrane component compare
Psyr_3230 +0.4 2.3 Glycosyl transferase, group 1 compare
Psyr_1111 +0.4 0.7 Response regulator receiver:Transcriptional regulatory protein, C-terminal compare
Psyr_4232 +0.4 1.8 Protein of unknown function DUF541 compare
Psyr_3594 +0.4 1.3 membrane protein-like protein compare
Psyr_3302 +0.4 2.4 mannose-6-phosphate isomerase, type 2 / mannose-1-phosphate guanylyltransferase (GDP) compare
Psyr_2692 +0.4 1.3 Polysaccharide deacetylase compare
Psyr_4692 +0.4 1.7 ABC transporter compare
Psyr_2783 +0.4 1.3 conserved hypothetical protein compare
Psyr_2617 +0.4 0.6 Secretion protein HlyD compare
Psyr_3156 +0.4 1.7 transcriptional regulator, LysR family compare
Psyr_2393 +0.4 1.4 Flavin reductase-like protein compare
Psyr_1600 +0.4 1.2 Zinc-containing alcohol dehydrogenase superfamily compare
Psyr_2852 +0.4 1.5 conserved hypothetical protein compare
Psyr_0256 +0.4 1.8 Phenylacetic acid degradation-related protein compare
Psyr_1489 +0.4 1.6 hypothetical protein compare
Psyr_1301 +0.4 2.2 Protein of unknown function DUF533 compare
Psyr_5023 +0.4 1.7 conserved hypothetical protein compare
Psyr_0231 +0.4 0.7 conserved hypothetical protein compare
Psyr_4789 +0.4 1.5 lipoprotein, putative compare
Psyr_1193 +0.4 0.8 type III helper protein HrpZ1 compare
Psyr_4630 +0.4 2.2 thiosulfate sulfurtransferase compare
Psyr_0546 +0.4 1.6 lipoprotein, putative compare
Psyr_0858 +0.4 1.0 conserved hypothetical protein compare
Psyr_1936 +0.4 1.3 tRNA-U16,U17-dihydrouridine synthase compare
Psyr_3590 +0.4 0.9 conserved hypothetical protein compare
Psyr_RNA78 +0.4 1.3 5S ribosomal RNA compare
Psyr_1013 +0.4 0.8 hypothetical protein compare
Psyr_2922 +0.4 1.9 Permease for cytosine/purines, uracil, thiamine, allantoin compare
Psyr_0957 +0.4 2.7 Protein of unknown function DUF1365 compare
Psyr_3761 +0.4 1.7 conserved hypothetical protein compare
Psyr_2406 +0.4 1.0 Flavin reductase-like protein compare
Psyr_1882 +0.4 2.0 auxin-binding protein, putative compare
Psyr_2507 +0.4 0.7 Endoribonuclease L-PSP compare
Psyr_2418 +0.4 1.6 shikimate dehydrogenase compare
Psyr_5088 +0.4 1.6 regulatory protein, LuxR:Response regulator receiver compare
Psyr_2701 +0.4 2.4 conserved hypothetical protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas syringae pv. syringae B728a in stress experiments

For stress Helenine across organisms