Experiment set9IT038 for Paraburkholderia bryophila 376MFSha3.1

Compare to:

Bu1_10

200 most important genes:

  gene name fitness t score description  
H281DRAFT_02141 -5.4 -2.8 hypothetical protein compare
H281DRAFT_00886 -4.5 -4.4 two component transcriptional regulator, winged helix family compare
H281DRAFT_04087 -4.4 -1.4 hypothetical protein compare
H281DRAFT_00199 -4.4 -2.2 uroporphyrinogen III methyltransferase / synthase compare
H281DRAFT_00933 -4.0 -4.8 hypothetical protein compare
H281DRAFT_03314 -3.9 -1.2 hypothetical protein compare
H281DRAFT_02582 -3.9 -2.2 Arabinose efflux permease compare
H281DRAFT_02235 -3.8 -6.6 multi-sensor signal transduction histidine kinase compare
H281DRAFT_04713 -3.6 -6.6 membrane-associated protein compare
H281DRAFT_06277 -3.6 -4.7 hypothetical protein compare
H281DRAFT_06310 -3.6 -5.4 Barstar (barnase inhibitor) compare
H281DRAFT_02732 -3.5 -1.1 RNA polymerase sigma-70 factor, ECF subfamily compare
H281DRAFT_04635 -3.4 -1.5 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) compare
H281DRAFT_05210 -3.3 -1.4 Sugar phosphate isomerase/epimerase compare
H281DRAFT_05967 -3.3 -1.4 Cupredoxin-like domain-containing protein compare
H281DRAFT_00274 -3.2 -7.0 molecular chaperone HtpG compare
H281DRAFT_04051 -3.2 -2.1 transcriptional regulator, RpiR family compare
H281DRAFT_03999 -3.2 -10.1 porin, GBP family compare
H281DRAFT_05293 -3.2 -1.4 amino acid ABC transporter ATP-binding protein, PAAT family compare
H281DRAFT_04201 -3.2 -1.6 O-antigen ligase compare
H281DRAFT_00075 -3.2 -2.1 Glycosyltransferase involved in cell wall bisynthesis compare
H281DRAFT_05609 -3.1 -2.1 penicillin-binding protein 1A compare
H281DRAFT_05551 -3.0 -8.3 transcriptional regulator, TetR family compare
H281DRAFT_00172 -3.0 -1.3 DNA-nicking endonuclease, Smr domain compare
H281DRAFT_05041 -3.0 -1.3 RNA polymerase sigma-70 factor, ECF subfamily compare
H281DRAFT_00853 -3.0 -1.3 3-oxoacyl-[acyl-carrier-protein] reductase /acetoacetyl-CoA reductase compare
H281DRAFT_04733 -2.8 -1.9 Protein of unknown function (DUF3318) compare
H281DRAFT_00947 -2.8 -3.8 polysaccharide export outer membrane protein compare
H281DRAFT_00958 -2.8 -2.0 Membrane protein involved in the export of O-antigen and teichoic acid compare
H281DRAFT_04120 -2.7 -6.6 argininosuccinate synthase compare
H281DRAFT_02218 -2.7 -4.9 exodeoxyribonuclease-3 compare
H281DRAFT_01229 -2.7 -1.4 Sugar phosphate permease compare
H281DRAFT_06197 -2.6 -1.8 hypothetical protein compare
H281DRAFT_02245 -2.6 -5.8 transcriptional regulator, LysR family compare
H281DRAFT_04734 -2.5 -3.8 Uncharacterized membrane protein YqjE compare
H281DRAFT_00648 -2.5 -1.7 Uncharacterized conserved protein YgbK, DUF1537 family compare
H281DRAFT_00248 -2.5 -1.8 hypothetical protein compare
H281DRAFT_05271 -2.5 -2.5 monosaccharide ABC transporter membrane protein, CUT2 family compare
H281DRAFT_03108 -2.5 -1.3 hypothetical protein compare
H281DRAFT_00531 -2.5 -4.5 hypothetical protein compare
H281DRAFT_01377 -2.4 -1.6 hypothetical protein compare
H281DRAFT_00175 -2.4 -2.2 DNA translocase FtsK compare
H281DRAFT_00603 -2.4 -3.0 ZipA, C-terminal FtsZ-binding domain compare
H281DRAFT_05534 -2.4 -2.1 Zn-dependent dipeptidase, dipeptidase homolog compare
H281DRAFT_01298 -2.4 -2.1 beta-RFAP synthase compare
H281DRAFT_04388 -2.3 -1.4 trehalose 6-phosphatase (EC 3.1.3.12) compare
H281DRAFT_00109 -2.3 -1.8 hypothetical protein compare
H281DRAFT_00227 -2.3 -3.3 two component transcriptional regulator, winged helix family compare
H281DRAFT_01721 -2.3 -2.0 zinc-binding alcohol dehydrogenase family protein compare
H281DRAFT_02670 -2.3 -1.9 transcriptional regulator, GntR family compare
H281DRAFT_04998 -2.2 -1.3 type III secretion protein T compare
H281DRAFT_02366 -2.2 -4.6 hypothetical protein compare
H281DRAFT_05086 -2.2 -2.3 DNA helicase/exodeoxyribonuclease V, beta subunit compare
H281DRAFT_00152 -2.1 -0.9 Protein of unknown function (DUF3460) compare
H281DRAFT_06367 -2.1 -1.4 pilus assembly protein CpaE compare
H281DRAFT_01053 -2.1 -1.2 3-hydroxyisobutyrate dehydrogenase compare
H281DRAFT_01474 -2.1 -1.2 isoquinoline 1-oxidoreductase, alpha subunit compare
H281DRAFT_06253 -2.1 -5.6 cell division protein ZapD compare
H281DRAFT_00808 -2.0 -2.1 Uncharacterized conserved protein, contains Mth938-like domain compare
H281DRAFT_00361 -2.0 -2.9 (3S)-hydroxyadipyl-CoA dehydrogenase (EC 1.1.1.35) / enoyl-CoA hydratase domain (from data) compare
H281DRAFT_03414 -2.0 -1.3 outer membrane surface antigen compare
H281DRAFT_03717 -2.0 -1.7 Rhodanese-related sulfurtransferase compare
H281DRAFT_02831 -2.0 -2.6 hypothetical protein compare
H281DRAFT_00050 -2.0 -1.0 Uncharacterized conserved protein, DUF1330 family compare
H281DRAFT_01413 -2.0 -1.3 hypothetical protein compare
H281DRAFT_05324 -2.0 -1.6 tripartite ATP-independent transporter solute receptor, DctP family compare
H281DRAFT_00843 -2.0 -2.5 lipoprotein NlpD compare
H281DRAFT_01756 -1.9 -3.0 Anti-sigma regulatory factor (Ser/Thr protein kinase) compare
H281DRAFT_00888 -1.9 -2.4 phytoene synthase compare
H281DRAFT_04337 -1.9 -2.6 molybdenum cofactor guanylyltransferase (EC 2.7.7.77) compare
H281DRAFT_04939 -1.9 -2.0 transcriptional regulator, TetR family compare
H281DRAFT_04171 -1.9 -4.7 membrane fusion protein, multidrug efflux system compare
H281DRAFT_06430 -1.9 -1.8 hypothetical protein compare
H281DRAFT_06232 -1.9 -4.0 peptidoglycan synthetase FtsI compare
H281DRAFT_03142 -1.9 -2.4 Lipid-binding SYLF domain-containing protein compare
H281DRAFT_01262 -1.8 -1.2 putative spermidine/putrescine transport system permease protein compare
H281DRAFT_01011 -1.8 -1.9 Uncharacterized membrane protein YkgB compare
H281DRAFT_04735 -1.8 -2.7 Membrane-anchored ribosome-binding protein, inhibits growth in stationary phase, ElaB/YqjD/DUF883 family compare
H281DRAFT_02873 -1.8 -1.3 ketopantoate reductase (EC 1.1.1.169) compare
H281DRAFT_02216 -1.8 -8.5 MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG compare
H281DRAFT_01946 -1.8 -5.4 hypothetical protein compare
H281DRAFT_05087 -1.8 -1.9 exodeoxyribonuclease V alpha subunit compare
H281DRAFT_05154 -1.8 -5.3 murein tetrapeptidase LD-carboxypeptidase (EC:3.4.17.13). Serine peptidase. MEROPS family S66 compare
H281DRAFT_02441 -1.8 -1.1 putative ABC transport system ATP-binding protein compare
H281DRAFT_06237 -1.8 -1.8 cell division-specific peptidoglycan biosynthesis regulator FtsW compare
H281DRAFT_04039 -1.8 -1.2 hypothetical protein compare
H281DRAFT_03931 -1.8 -2.4 phosphoglycolate phosphatase compare
H281DRAFT_04119 -1.8 -3.5 ornithine carbamoyltransferase compare
H281DRAFT_01246 -1.8 -0.9 hypothetical protein compare
H281DRAFT_05274 -1.8 -2.4 Uncharacterized protein YcsI, UPF0317 family compare
H281DRAFT_05757 -1.8 -1.7 Predicted nuclease of the RNAse H fold, HicB family compare
H281DRAFT_02497 -1.7 -1.1 Enoyl-CoA hydratase/carnithine racemase compare
H281DRAFT_00074 -1.7 -2.2 UDP-galactose 4-epimerase compare
H281DRAFT_00189 -1.7 -2.6 heptosyltransferase-1 compare
H281DRAFT_02813 -1.7 -1.4 Uncharacterized protein conserved in bacteria compare
H281DRAFT_01309 -1.7 -3.0 dihydropteroate synthase-related protein compare
H281DRAFT_03496 -1.7 -1.8 hypothetical protein compare
H281DRAFT_04515 -1.7 -2.2 RNAse G compare
H281DRAFT_01144 -1.7 -1.2 transcriptional regulator, LysR family compare
H281DRAFT_00529 -1.7 -2.7 KUP system potassium uptake protein compare
H281DRAFT_01107 -1.7 -0.9 hypothetical protein compare
H281DRAFT_01184 -1.7 -1.2 3-oxoacyl-[acyl-carrier protein] reductase compare
H281DRAFT_02375 -1.7 -2.3 amino acid/amide ABC transporter ATP-binding protein 1, HAAT family compare
H281DRAFT_02114 -1.6 -2.7 solute carrier family 10 (sodium/bile acid cotransporter), member 7 compare
H281DRAFT_04837 -1.6 -7.8 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family compare
H281DRAFT_05476 -1.6 -2.0 Short-chain dehydrogenase compare
H281DRAFT_02404 -1.6 -9.9 L-proline dehydrogenase /delta-1-pyrroline-5-carboxylate dehydrogenase compare
H281DRAFT_04727 -1.6 -2.8 transcriptional repressor NrdR compare
H281DRAFT_01210 -1.6 -2.1 Protein of unknown function (DUF1488) compare
H281DRAFT_06008 -1.6 -3.9 RNA polymerase, sigma 70 subunit, RpoD compare
H281DRAFT_01821 -1.6 -1.2 Predicted lipid-binding transport protein, Tim44 family compare
H281DRAFT_03282 -1.6 -1.8 ADP-heptose:LPS heptosyltransferase compare
H281DRAFT_06341 -1.6 -2.6 glyoxylate/hydroxypyruvate reductase A compare
H281DRAFT_00323 -1.6 -2.3 GAF domain-containing protein compare
H281DRAFT_01225 -1.6 -2.0 L-rhamnose mutarotase compare
H281DRAFT_06272 -1.6 -0.9 uncharacterized protein compare
H281DRAFT_00927 -1.6 -4.6 UPF0755 protein compare
H281DRAFT_06393 -1.6 -2.2 N-carbamoyl-L-amino-acid hydrolase compare
H281DRAFT_04986 -1.6 -2.9 protein ImuB compare
H281DRAFT_02449 -1.5 -1.5 hypothetical protein compare
H281DRAFT_05814 -1.5 -6.3 Predicted transcription regulator, contains HTH domain, MarR family compare
H281DRAFT_05389 -1.5 -0.9 protein of unknown function (DUF3331) compare
H281DRAFT_04883 -1.5 -1.0 L-lysine exporter family protein LysE/ArgO compare
H281DRAFT_00086 -1.5 -1.4 urease subunit beta compare
H281DRAFT_02868 -1.5 -2.3 DNA repair exonuclease SbcCD nuclease subunit compare
H281DRAFT_04369 -1.5 -1.7 Uncharacterized conserved protein YjbJ, UPF0337 family compare
H281DRAFT_02559 -1.5 -1.6 hypothetical protein compare
H281DRAFT_01069 -1.5 -1.2 Cytosine/adenosine deaminase compare
H281DRAFT_02832 -1.5 -1.0 hypothetical protein compare
H281DRAFT_01237 -1.5 -0.9 DnaJ-class molecular chaperone with C-terminal Zn finger domain compare
H281DRAFT_04083 -1.4 -4.2 ATP-dependent Clp protease adaptor protein ClpS compare
H281DRAFT_02054 -1.4 -6.2 penicillin-binding protein 6. Serine peptidase. MEROPS family S11 compare
H281DRAFT_01235 -1.4 -3.1 DNA-binding protein H-NS compare
H281DRAFT_04922 -1.4 -1.4 iron complex transport system permease protein compare
H281DRAFT_06022 -1.4 -3.5 DNA polymerase I compare
H281DRAFT_02442 -1.4 -3.0 NADH dehydrogenase subunit M compare
H281DRAFT_00236 -1.4 -3.1 sigma54 specific transcriptional regulator, Fis family compare
H281DRAFT_06556 -1.4 -1.4 hypothetical protein compare
H281DRAFT_05908 -1.4 -1.5 hypothetical protein compare
H281DRAFT_02977 -1.4 -1.6 diguanylate cyclase (GGDEF) domain-containing protein compare
H281DRAFT_05085 -1.4 -1.7 DNA helicase/exodeoxyribonuclease V, gamma subunit compare
H281DRAFT_05986 -1.4 -1.2 transcriptional regulator, TetR family compare
H281DRAFT_00308 -1.4 -3.4 Superfamily II DNA and RNA helicase compare
H281DRAFT_01050 -1.4 -1.5 maleylacetate reductase compare
H281DRAFT_00848 -1.4 -1.1 ribosomal large subunit pseudouridine synthase D (EC 5.4.99.-) compare
H281DRAFT_03995 -1.4 -1.6 hypothetical protein compare
H281DRAFT_01299 -1.4 -1.8 methylene-tetrahydromethanopterin dehydrogenase compare
H281DRAFT_01596 -1.4 -2.4 3-oxoadipate CoA-transferase beta subunit compare
H281DRAFT_04297 -1.4 -6.0 adenosylcobinamide-phosphate synthase compare
H281DRAFT_01035 -1.4 -1.3 TPR repeat-containing protein compare
H281DRAFT_04467 -1.4 -5.8 UDP-glucose pyrophosphorylase compare
H281DRAFT_01568 -1.4 -1.4 D-serine ammonia-lyase compare
H281DRAFT_04755 -1.4 -2.3 transcriptional regulator, LysR family compare
H281DRAFT_06288 -1.4 -4.5 UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase compare
H281DRAFT_03274 -1.3 -1.0 hypothetical protein compare
H281DRAFT_00535 -1.3 -0.9 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD compare
H281DRAFT_05953 -1.3 -1.7 Predicted metal-dependent hydrolase, TIM-barrel fold compare
H281DRAFT_05215 -1.3 -1.3 Uncharacterized membrane protein YhfC compare
H281DRAFT_05122 -1.3 -2.7 host factor-I protein compare
H281DRAFT_01660 -1.3 -4.4 4-hydroxyphenylacetate 3-monooxygenase reductase component (EC 1.14.13.3) compare
H281DRAFT_01614 -1.3 -1.0 hypothetical protein compare
H281DRAFT_05966 -1.3 -1.3 transcriptional regulator, LysR family compare
H281DRAFT_05298 -1.3 -0.9 amino acid ABC transporter membrane protein 2, PAAT family compare
H281DRAFT_02003 -1.3 -2.6 Rhodanese-related sulfurtransferase compare
H281DRAFT_01441 -1.3 -0.9 two component heavy metal response transcriptional regulator, winged helix family compare
H281DRAFT_05146 -1.3 -1.7 methyltransferase, TIGR00027 family compare
H281DRAFT_04470 -1.3 -1.1 adenosylhomocysteine nucleosidase compare
H281DRAFT_05445 -1.3 -1.8 protein of unknown function (DUF4440) compare
H281DRAFT_00559 -1.3 -1.1 hypothetical protein compare
H281DRAFT_05545 -1.3 -1.0 NitT/TauT family transport system ATP-binding protein compare
H281DRAFT_05544 -1.3 -1.3 NitT/TauT family transport system permease protein compare
H281DRAFT_03346 -1.3 -1.1 Metal-dependent hydrolase, endonuclease/exonuclease/phosphatase family compare
H281DRAFT_04170 -1.3 -4.6 multidrug efflux pump compare
H281DRAFT_02058 -1.3 -1.0 cholesterol transport system auxiliary component compare
H281DRAFT_01674 -1.3 -3.3 hypothetical protein compare
H281DRAFT_02804 -1.3 -2.9 secondary thiamine-phosphate synthase enzyme compare
H281DRAFT_01798 -1.3 -0.8 Transmembrane transcriptional regulator (anti-sigma factor RsiW) compare
H281DRAFT_01965 -1.3 -1.1 hypothetical protein compare
H281DRAFT_02602 -1.3 -0.8 DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain compare
H281DRAFT_03428 -1.3 -1.9 cytochrome bo3 quinol oxidase subunit 3 (EC 1.10.3.-) compare
H281DRAFT_02123 -1.2 -1.4 copper homeostasis protein compare
H281DRAFT_00736 -1.2 -2.3 Lysophospholipase compare
H281DRAFT_02735 -1.2 -1.5 AraC family transcriptional regulator, activator of mtrCDE compare
H281DRAFT_00873 -1.2 -2.1 hypothetical protein compare
H281DRAFT_01330 -1.2 -2.0 pyrroloquinoline quinone biosynthesis protein B compare
H281DRAFT_05000 -1.2 -1.7 ATP synthase in type III secretion protein N compare
H281DRAFT_02469 -1.2 -2.1 membrane dipeptidase compare
H281DRAFT_02339 -1.2 -6.8 glutamate-cysteine ligase compare
H281DRAFT_02600 -1.2 -1.0 Undecaprenyl-diphosphatase (EC 3.6.1.27) compare
H281DRAFT_03127 -1.2 -2.5 oligopeptide transport system permease protein compare
H281DRAFT_04656 -1.2 -1.4 Predicted transcriptional regulator compare
H281DRAFT_01120 -1.2 -2.2 monosaccharide ABC transporter membrane protein, CUT2 family compare
H281DRAFT_05635 -1.2 -5.7 putative ATP-binding cassette transporter compare
H281DRAFT_05934 -1.2 -1.1 Uncharacterized conserved protein YbjT, contains NAD(P)-binding and DUF2867 domains compare
H281DRAFT_05743 -1.2 -1.8 CheW protein compare
H281DRAFT_00176 -1.2 -0.9 outer membrane lipoprotein carrier protein compare
H281DRAFT_00217 -1.2 -2.6 hypothetical protein compare
H281DRAFT_03815 -1.2 -1.9 D-glucarate dehydratase compare
H281DRAFT_02465 -1.2 -2.7 transcriptional regulator, TetR family compare
H281DRAFT_05741 -1.2 -1.3 two-component system, chemotaxis family, response regulator CheY compare


Specific Phenotypes

For 10 genes in this experiment