Experiment set9IT038 for Bifidobacterium breve UCC2003

Compare to:

diet=StandardDiet2; sample=FecalPellet; mouse17; day2

200 most important genes:

  gene name fitness t score description  
BBR_RS20200 -8.1 -5.6 alpha-galactosidase compare
BBR_RS16300 -7.9 -5.5 pyridoxamine 5'-phosphate oxidase family protein compare
BBR_RS12910 -7.7 -13.9 galactokinase compare
BBR_RS17775 -7.5 -5.2 LacI family DNA-binding transcriptional regulator compare
BBR_RS10740 -7.4 -4.5 tRNA-Gly compare
BBR_RS13380 -7.3 -5.1 amidophosphoribosyltransferase compare
BBR_RS20195 -7.2 -24.0 ROK family transcriptional regulator compare
BBR_RS10980 -7.2 -15.4 TetR/AcrR family transcriptional regulator compare
BBR_RS18595 -7.2 -20.2 1,4-dihydroxy-2-naphthoate octaprenyltransferase compare
BBR_RS12895 -7.1 -12.8 quinone-dependent dihydroorotate dehydrogenase compare
BBR_RS16540 -7.0 -4.8 XRE family transcriptional regulator compare
BBR_RS12900 -7.0 -4.8 DeoR/GlpR transcriptional regulator compare
BBR_RS12045 -6.8 -4.7 hypothetical protein compare
BBR_RS13705 -6.7 -10.3 Conserved hypothetical membrane spanning protein, contains a vitamin K epoxide reductase domain compare
BBR_RS21165 -6.5 -3.2 hypothetical protein compare
BBR_RS17455 -6.4 -11.6 DNA-binding response regulator compare
BBR_RS13210 -6.4 -8.8 anion transporter compare
BBR_RS13375 -6.4 -4.4 phosphoribosylformylglycinamidine cyclo-ligase compare
BBR_RS13445 -6.4 -6.2 phosphoribosylformylglycinamidine synthase compare
BBR_RS12880 -6.3 -11.8 Crp/Fnr family transcriptional regulator compare
BBR_RS21170 -6.2 -4.3 membrane protein insertion efficiency factor YidD compare
BBR_RS10285 -6.2 -3.6 membrane protein compare
BBR_RS16650 -6.1 -11.7 ABC transporter substrate-binding protein compare
BBR_RS13450 -5.9 -4.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
BBR_RS16490 -5.8 -4.0 polyprenyl synthase compare
BBR_RS10720 -5.8 -18.2 PDZ domain-containing protein compare
BBR_RS14275 -5.8 -2.0 30S ribosomal protein S1 compare
BBR_RS18565 -5.7 -3.4 CHAP domain-containing protein compare
BBR_RS11720 -5.7 -3.9 DUF2469 domain-containing protein compare
BBR_RS19760 -5.7 -3.9 polysaccharide ABC transporter ATPase compare
BBR_RS12545 -5.7 -3.9 DUF4012 domain-containing protein compare
BBR_RS14230 -5.6 -3.9 HAMP domain-containing histidine kinase compare
BBR_RS14215 -5.6 -3.9 peptidase compare
BBR_RS16430 -5.6 -3.8 nucleotide pyrophosphatase compare
BBR_RS20190 -5.5 -21.0 Raffinose-binding protein compare
BBR_RS20185 -5.5 -19.9 sugar ABC transporter permease compare
BBR_RS20180 -5.5 -17.4 carbohydrate ABC transporter permease compare
BBR_RS13905 -5.4 -8.6 ornithine carbamoyltransferase compare
BBR_RS11135 -5.4 -17.2 dihydrodipicolinate synthase family protein compare
BBR_RS13770 -5.4 -3.7 DNA repair protein RecO compare
BBR_RS13820 -5.4 -1.9 ATP-binding protein compare
BBR_RS19155 -5.3 -11.4 phosphate ABC transporter, permease protein PstA compare
BBR_RS13805 -5.3 -3.2 hypothetical protein compare
BBR_RS15050 -5.2 -3.3 DUF948 domain-containing protein compare
BBR_RS11205 -5.2 -4.0 HPr family phosphocarrier protein compare
BBR_RS13370 -5.1 -3.5 phosphoribosylamine--glycine ligase compare
BBR_RS14140 -5.1 -3.5 Ppx/GppA family phosphatase compare
BBR_RS10625 -5.1 -3.3 FHA domain-containing protein compare
BBR_RS10755 -5.0 -3.4 adenylosuccinate synthase compare
BBR_RS18695 -5.0 -7.3 PRD domain-containing protein compare
BBR_RS16425 -4.9 -3.4 DUF3071 domain-containing protein compare
BBR_RS20460 -4.9 -3.4 chromosome partitioning protein ParB compare
BBR_RS16640 -4.9 -3.4 ABC transporter permease compare
BBR_RS19125 -4.9 -3.4 hypothetical protein compare
BBR_RS11675 -4.8 -3.3 hypothetical protein compare
BBR_RS15440 -4.7 -3.3 orotidine-5'-phosphate decarboxylase compare
BBR_RS13830 -4.7 -1.7 DUF4191 domain-containing protein compare
BBR_RS10990 -4.7 -11.8 recombination protein RecR compare
BBR_RS13455 -4.7 -3.2 formate-dependent phosphoribosylglycinamide formyltransferase compare
BBR_RS20175 -4.7 -18.9 LacI family transcriptional regulator compare
BBR_RS16905 -4.7 -8.5 hypothetical protein compare
BBR_RS17640 -4.6 -3.2 DNA-directed RNA polymerase subunit omega compare
BBR_RS13630 -4.6 -3.2 carbamoyl-phosphate synthase small subunit compare
BBR_RS12500 -4.6 -1.6 sugar ABC transporter permease compare
BBR_RS11805 -4.6 -6.6 hypothetical protein compare
BBR_RS11415 -4.6 -12.2 amino acid ABC transporter substrate-binding protein compare
BBR_RS11510 -4.6 -2.3 signal recognition particle-docking protein FtsY compare
BBR_RS18735 -4.5 -12.6 hypothetical protein compare
BBR_RS15435 -4.5 -3.1 dihydroorotase compare
BBR_RS15670 -4.4 -4.2 adenine phosphoribosyltransferase compare
BBR_RS10460 -4.4 -14.7 peroxiredoxin compare
BBR_RS18690 -4.4 -8.1 diacylglycerol kinase compare
BBR_RS19205 -4.3 -25.1 Evolved beta-galactosidase subunit alpha compare
BBR_RS11590 -4.3 -1.5 30S ribosomal protein S18 compare
BBR_RS15080 -4.3 -3.0 chorismate synthase compare
BBR_RS20465 -4.3 -6.6 chromosome partitioning protein compare
BBR_RS16635 -4.3 -2.9 ABC transporter ATP-binding protein compare
BBR_RS13635 -4.3 -2.9 carbamoyl-phosphate synthase large subunit compare
BBR_RS15455 -4.2 -2.9 orotate phosphoribosyltransferase compare
BBR_RS18955 -4.2 -12.9 bifunctional acetaldehyde-CoA/alcohol dehydrogenase compare
BBR_RS16750 -4.2 -2.9 ParA family protein compare
BBR_RS21015 -4.2 -2.1 hypothetical protein compare
BBR_RS17500 -4.1 -6.5 hypothetical protein compare
BBR_RS16820 -4.1 -3.3 RNA polymerase sigma factor RpoE compare
BBR_RS20245 -4.1 -26.3 cation-translocating P-type ATPase compare
BBR_RS18700 -4.0 -7.3 PTS beta-glucoside transporter subunit EIIBCA compare
BBR_RS19200 -4.0 -10.1 hypothetical protein compare
BBR_RS18215 -4.0 -8.3 AI-2E family transporter compare
BBR_RS14370 -4.0 -2.7 3-phosphoshikimate 1-carboxyvinyltransferase compare
BBR_RS10465 -4.0 -19.3 FAD-dependent oxidoreductase compare
BBR_RS13125 -3.9 -1.7 ABC transporter permease compare
BBR_RS10620 -3.9 -2.7 phosphoprotein phosphatase compare
BBR_RS15425 -3.9 -2.7 aspartate carbamoyltransferase compare
BBR_RS10265 -3.9 -10.4 DNA replication and repair protein RecF compare
BBR_RS19450 -3.9 -2.2 GTPase ObgE compare
BBR_RS11410 -3.8 -13.7 iron permease compare
BBR_RS20435 -3.8 -1.4 CCA tRNA nucleotidyltransferase compare
BBR_RS19645 -3.8 -7.7 RNA degradosome polyphosphate kinase compare
BBR_RS11470 -3.8 -1.9 6-phosphogluconolactonase compare
BBR_RS17490 -3.7 -10.5 MoxR family ATPase compare
BBR_RS20480 -3.7 -1.3 membrane protein compare
BBR_RS16675 -3.7 -4.6 prephenate dehydrogenase/arogenate dehydrogenase family protein compare
BBR_RS20795 -3.6 -2.1 cystathionine gamma-lyase compare
BBR_RS15070 -3.6 -3.3 endolytic transglycosylase MltG compare
BBR_RS15520 -3.6 -4.3 shikimate 5-dehydrogenase compare
BBR_RS11210 -3.6 -9.6 phosphoenolpyruvate--protein phosphotransferase compare
BBR_RS12605 -3.6 -4.1 glycosyltransferase family 2 protein compare
BBR_RS10660 -3.6 -13.5 esterase compare
BBR_RS10905 -3.5 -4.2 nucleotide exchange factor GrpE compare
BBR_RS15665 -3.5 -2.3 preprotein translocase subunit YajC compare
BBR_RS13750 -3.5 -2.1 DivIVA domain-containing protein compare
BBR_RS17290 -3.5 -6.2 Fused ATP-binding protein and permease of ABC transporter compare
BBR_RS10890 -3.5 -11.5 LacI family transcriptional regulator compare
BBR_RS19465 -3.4 -3.6 ribonuclease E/G compare
BBR_RS12450 -3.4 -2.7 signal peptidase I compare
BBR_RS20775 -3.4 -2.6 DUF4230 domain-containing protein compare
BBR_RS15090 -3.3 -1.6 type II 3-dehydroquinate dehydratase compare
BBR_RS14260 -3.3 -1.7 ABC transporter ATP-binding protein compare
BBR_RS18795 -3.3 -4.6 tRNA pseudouridine(38-40) synthase TruA compare
BBR_RS19120 -3.3 -2.3 helicase compare
BBR_RS20685 -3.3 -3.6 hypothetical protein compare
BBR_RS20440 -3.3 -8.2 NUDIX hydrolase compare
BBR_RS16965 -3.3 -2.3 ATP-dependent DNA helicase compare
BBR_RS20455 -3.2 -8.1 thioredoxin-disulfide reductase compare
BBR_RS12590 -3.2 -2.3 beta-1,6-N-acetylglucosaminyltransferase compare
BBR_RS19755 -3.2 -11.3 glycosyl transferase compare
BBR_RS17505 -3.2 -7.8 VWA domain-containing protein compare
BBR_RS15055 -3.2 -2.2 hypothetical protein compare
BBR_RS12510 -3.1 -13.0 beta-galactosidase compare
BBR_RS10580 -3.1 -2.9 septation inhibitor protein compare
BBR_RS19190 -3.1 -7.8 3-deoxy-7-phosphoheptulonate synthase compare
BBR_RS16240 -3.1 -4.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD compare
BBR_RS16250 -3.1 -2.9 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB compare
BBR_RS12975 -3.1 -12.4 ATP-dependent DNA helicase UvrD/REP family compare
BBR_RS10615 -3.1 -3.4 FtsW/RodA/SpoVE family cell cycle protein compare
BBR_RS17510 -3.1 -5.8 VWA domain-containing protein compare
BBR_RS10565 -3.0 -17.5 glycogen/starch/alpha-glucan family phosphorylase compare
BBR_RS13040 -3.0 -2.1 CHAP domain-containing protein compare
BBR_RS17495 -2.9 -7.5 DUF58 domain-containing protein compare
BBR_RS19160 -2.9 -1.4 phosphate ABC transporter permease subunit PstC compare
BBR_RS12355 -2.9 -3.6 ribonuclease III compare
BBR_RS19435 -2.9 -2.8 pyridoxal phosphate-dependent aminotransferase compare
BBR_RS20720 -2.9 -4.7 DUF4422 domain-containing protein compare
BBR_RS14190 -2.9 -6.6 transcriptional regulator compare
BBR_RS19240 -2.8 -8.3 LacI family transcriptional regulator compare
BBR_RS18180 -2.8 -7.4 ATP-dependent zinc metalloprotease FtsH compare
BBR_RS14200 -2.8 -3.4 WhiB family transcriptional regulator compare
BBR_RS19395 -2.8 -2.3 hypothetical protein compare
BBR_RS12375 -2.8 -1.6 pantetheine-phosphate adenylyltransferase compare
BBR_RS16530 -2.7 -4.3 recombinase RecA compare
BBR_RS13035 -2.7 -1.9 ABC transporter permease compare
BBR_RS18575 -2.7 -3.8 hypothetical protein compare
BBR_RS19220 -2.7 -13.5 glycoside hydrolase family 65 protein compare
BBR_RS12980 -2.7 -9.9 ATP-dependent DNA helicase UvrD/REP family compare
BBR_RS15805 -2.7 -4.8 prolipoprotein diacylglyceryl transferase compare
BBR_RS19095 -2.7 -10.0 magnesium transporter compare
BBR_RS15020 -2.7 -2.0 membrane protein compare
BBR_RS16255 -2.6 -2.9 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE compare
BBR_RS12235 -2.6 -0.9 hypothetical protein compare
BBR_RS20415 -2.5 -9.9 G5 domain-containing protein compare
BBR_RS16985 -2.5 -3.1 transcriptional repressor LexA compare
BBR_RS14540 -2.5 -3.3 Na+/H+ antiporter NhaA compare
BBR_RS20085 -2.5 -8.3 histidine phosphatase family protein compare
BBR_RS18635 -2.5 -3.9 PspC domain-containing protein compare
BBR_RS11540 -2.4 -1.7 DUF1727 domain-containing protein compare
BBR_RS14220 -2.4 -4.1 phosphomannomutase compare
BBR_RS11770 -2.4 -4.0 chorismate mutase compare
BBR_RS15085 -2.4 -1.6 3-dehydroquinate synthase compare
BBR_RS19260 -2.4 -9.4 hypothetical protein compare
BBR_RS18745 -2.4 -1.2 bifunctional riboflavin kinase/FMN adenylyltransferase compare
BBR_RS14210 -2.4 -1.6 hypothetical protein compare
BBR_RS14205 -2.3 -1.6 hypothetical protein compare
BBR_RS19740 -2.3 -11.6 DUF2142 domain-containing protein compare
BBR_RS13305 -2.3 -3.1 transcriptional repressor compare
BBR_RS16960 -2.3 -1.6 transcriptional regulator MraZ compare
BBR_RS20655 -2.3 -3.5 hypothetical protein compare
BBR_RS20450 -2.2 -13.3 murein biosynthesis integral membrane protein MurJ compare
BBR_RS17515 -2.2 -4.6 hypothetical protein compare
BBR_RS13030 -2.2 -1.5 cell division ATP-binding protein FtsE compare
BBR_RS13640 -2.2 -4.1 orotidine-5'-phosphate decarboxylase compare
BBR_RS18050 -2.2 -2.0 threonylcarbamoyl-AMP synthase compare
BBR_RS15650 -2.2 -1.7 Holliday junction resolvase compare
BBR_RS11185 -2.1 -2.0 type I DNA topoisomerase compare
BBR_RS15695 -2.1 -4.1 membrane channel protein compare
BBR_RS15785 -2.0 -2.0 CDP-alcohol phosphatidyltransferase family protein compare
BBR_RS18990 -2.0 -2.3 AbrB family transcriptional regulator compare
BBR_RS20855 -2.0 -2.4 hypothetical protein compare
BBR_RS11145 -2.0 -2.0 hypothetical protein compare
BBR_RS12905 -2.0 -1.4 galactose-1-phosphate uridylyltransferase compare
BBR_RS19795 -2.0 -10.7 hypothetical protein compare
BBR_RS10445 -1.9 -10.3 HlyC/CorC family transporter compare
BBR_RS16955 -1.9 -1.5 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
BBR_RS20830 -1.9 -2.9 hypothetical protein compare
BBR_RS18185 -1.9 -2.3 hypoxanthine phosphoribosyltransferase compare
BBR_RS15445 -1.9 -3.0 dihydroorotate dehydrogenase electron transfer subunit compare
BBR_RS16810 -1.9 -5.9 aldose 1-epimerase compare
BBR_RS19825 -1.8 -7.2 HD domain-containing protein compare
BBR_RS10780 -1.8 -9.1 sucrose phosphorylase compare
BBR_RS16625 -1.8 -3.2 DUF3710 domain-containing protein compare
BBR_RS16755 -1.8 -3.1 site-specific tyrosine recombinase XerD compare


Specific Phenotypes

For 1 genes in this experiment

For mouse diet=StandardDiet2; sample=FecalPellet in Bifidobacterium breve UCC2003

For mouse diet=StandardDiet2; sample=FecalPellet across organisms