Experiment set9IT037 for Pseudomonas syringae pv. syringae B728a

Compare to:

KB with Physcion 10 mM

200 most important genes:

  gene name fitness t score description  
Psyr_4340 -3.4 -11.8 phosphomethylpyrimidine kinase, putative compare
Psyr_0951 -3.3 -4.4 UBA/THIF-type NAD/FAD binding fold:MoeZ/MoeB compare
Psyr_0034 -3.2 -4.4 tryptophan synthase, beta chain compare
Psyr_4341 -3.1 -11.2 thiamine-phosphate diphosphorylase compare
Psyr_4687 -2.8 -11.9 biotin synthase compare
Psyr_4740 -2.8 -7.2 thiazole-phosphate synthase compare
Psyr_2593 -2.8 -5.2 ABC transporter compare
Psyr_4203 -2.7 -4.0 SsrA-binding protein compare
Psyr_5132 -2.7 -4.6 Glucose-inhibited division protein A subfamily compare
Psyr_1544 -2.7 -5.7 SirA-like protein compare
Psyr_1613 -2.5 -5.4 septum site-determining protein MinC compare
Psyr_4686 -2.5 -7.5 8-amino-7-oxononanoate synthase compare
Psyr_0033 -2.4 -3.6 tryptophan synthase, alpha chain compare
Psyr_4683 -2.3 -6.3 dethiobiotin synthase compare
Psyr_2980 -2.0 -4.4 UDP-glucose pyrophosphorylase compare
Psyr_1373 -1.9 -3.2 Peptidoglycan-binding LysM:Peptidase M23B compare
Psyr_4091 -1.8 -5.3 8-oxo-dGTPase compare
Psyr_4684 -1.8 -4.3 biotin synthesis protein BioC compare
Psyr_0454 -1.8 -6.4 adenosylmethionine-8-amino-7-oxononanoate aminotransferase apoenzyme compare
Psyr_4519 -1.8 -6.8 General substrate transporter:Major facilitator superfamily compare
Psyr_0529 -1.7 -5.4 Glycosyl transferase, group 1 compare
Psyr_4362 -1.6 -2.8 Rare lipoprotein A compare
Psyr_3419 -1.6 -4.3 4Fe-4S ferredoxin, iron-sulfur binding protein compare
Psyr_3055 -1.6 -1.8 Aminoglycoside phosphotransferase compare
Psyr_1419 -1.6 -4.0 preQ(0) biosynthesis protein QueC compare
Psyr_0574 -1.6 -5.5 protease FtsH subunit HflK compare
Psyr_2927 -1.6 -3.3 transcriptional regulator, TetR family compare
Psyr_0255 -1.6 -2.3 glutamate-cysteine ligase compare
Psyr_0835 -1.5 -5.6 transcriptional regulator, TraR/DksA family compare
Psyr_3208 -1.5 -3.2 NADH dehydrogenase subunit M compare
Psyr_4774 -1.4 -1.5 Hypothetical protein compare
Psyr_1227 -1.4 -3.5 Queuosine biosynthesis protein compare
Psyr_0383 -1.4 -1.2 Twin-arginine translocation protein TatB compare
Psyr_3013 -1.4 -2.1 magnesium chelatase subunit ChlD compare
Psyr_0487 -1.4 -2.8 glutathione synthase compare
Psyr_2590 -1.4 -2.1 Periplasmic binding protein compare
Psyr_0531 -1.4 -3.6 LmbE-like protein compare
Psyr_3202 -1.4 -2.2 NADH dehydrogenase subunit G compare
Psyr_0571 -1.4 -3.1 tRNA isopentenyltransferase compare
Psyr_1268 -1.4 -6.1 extracellular solute-binding protein, family 3:SLT compare
Psyr_0917 -1.3 -8.5 ABC-2 compare
Psyr_4580 -1.3 -3.0 anthranilate phosphoribosyltransferase compare
Psyr_1747 -1.3 -5.6 ATP-dependent Clp protease proteolytic subunit ClpP compare
Psyr_2897 -1.3 -5.9 regulatory protein, LuxR:Response regulator receiver compare
Psyr_0831 -1.3 -3.1 Two-component response regulator CbrB compare
Psyr_3358 -1.3 -3.1 transmembrane pair compare
Psyr_1953 -1.2 -1.7 conserved hypothetical protein compare
Psyr_0475 -1.2 -2.6 Protein of unknown function YGGT compare
Psyr_0014 -1.2 -0.8 lipid A biosynthesis acyltransferase compare
Psyr_1410 -1.2 -3.9 Holliday junction DNA helicase RuvB compare
Psyr_4991 -1.2 -1.9 hypothetical protein compare
Psyr_1663 -1.1 -4.2 phosphoribosylanthranilate isomerase compare
Psyr_4051 -1.1 -2.7 transcriptional regulator, ArsR family compare
Psyr_1371 -1.1 -6.0 5'-nucleotidase / exopolyphosphatase / 3'-nucleotidase compare
Psyr_2137 -1.1 -2.6 molybdopterin molybdochelatase compare
Psyr_1614 -1.1 -1.0 lipid A biosynthesis acyltransferase compare
Psyr_0918 -1.1 -8.1 ABC transporter compare
Psyr_0982 -1.1 -2.9 conserved hypothetical protein compare
Psyr_4138 -1.1 -2.6 Toluene tolerance compare
Psyr_2396 -1.0 -2.9 Tartrate dehydrogenase compare
Psyr_3193 -1.0 -2.0 Transcription factor jumonji, jmjC compare
Psyr_1963 -1.0 -3.7 Cyclic peptide transporter compare
Psyr_3667 -1.0 -3.0 conserved hypothetical protein compare
Psyr_5067 -1.0 -4.6 conserved hypothetical protein compare
Psyr_4115 -1.0 -2.0 phosphoheptose isomerase compare
Psyr_4404 -1.0 -2.3 tRNA-U20-dihydrouridine synthase compare
Psyr_2591 -1.0 -4.0 transport system permease protein compare
Psyr_1418 -1.0 -3.0 Radical SAM compare
Psyr_3698 -1.0 -3.8 Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal:Hpt compare
Psyr_4566 -1.0 -5.2 Peptidase M23B compare
Psyr_3904 -1.0 -4.9 Major intrinsic protein compare
Psyr_0263 -1.0 -4.1 Two-component response regulator AlgB compare
Psyr_3701 -1.0 -1.6 thioredoxin, putative compare
Psyr_0838 -0.9 -3.1 Rieske [2Fe-2S] region compare
Psyr_1910 -0.9 -3.2 VacJ-like lipoprotein compare
Psyr_0303 -0.9 -2.5 Ferredoxin:Oxidoreductase FAD/NAD(P)-binding protein compare
Psyr_0936 -0.9 -6.8 Glycosyl transferase, group 1 compare
Psyr_4416 -0.9 -2.2 precorrin-8X methylmutase compare
Psyr_2582 -0.9 -6.0 TonB-dependent siderophore receptor compare
Psyr_4897 -0.9 -2.2 imidazoleglycerol-phosphate dehydratase compare
Psyr_2360 -0.9 -2.4 CBS compare
Psyr_2073 -0.9 -2.3 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase compare
Psyr_4350 -0.9 -2.8 Protein of unknown function DUF218 compare
Psyr_1017 -0.9 -1.3 type III effector HopJ1 compare
Psyr_0826 -0.9 -4.1 glucose-6-phosphate isomerase compare
Psyr_0385 -0.9 -2.2 phosphoribosyl-ATP pyrophosphatase compare
Psyr_1236 -0.9 -3.3 transcriptional regulator, BadM/Rrf2 family compare
Psyr_2095 -0.9 -3.8 Conserved TM helix compare
Psyr_0979 -0.9 -2.9 conserved hypothetical protein compare
Psyr_2872 -0.9 -1.5 hypothetical protein compare
Psyr_3427 -0.9 -1.9 conserved hypothetical protein compare
Psyr_4808 -0.9 -1.2 conserved hypothetical protein compare
Psyr_4158 -0.8 -4.9 conserved hypothetical protein compare
Psyr_3246 -0.8 -2.5 Ku compare
Psyr_2211 -0.8 -1.9 monooxygenase, NtaA/SnaA/SoxA family compare
Psyr_3288 -0.8 -1.6 conserved hypothetical protein compare
Psyr_1138 -0.8 -0.7 GCN5-related N-acetyltransferase compare
Psyr_2854 -0.8 -3.2 conserved hypothetical protein compare
Psyr_4139 -0.8 -3.6 Mce4/Rv3499c/MTV023.06c protein compare
Psyr_3142 -0.8 -1.9 general secretion pathway protein N, putative compare
Psyr_4512 -0.8 -4.1 putative phage-related protein compare
Psyr_3676 -0.8 -3.0 adenosylcobyric acid synthase (glutamine-hydrolysing) compare
Psyr_5102 -0.8 -1.8 ABC transporter compare
Psyr_0580 -0.8 -1.8 23S rRNA Gm-2251 2'-O-methyltransferase compare
Psyr_2594 -0.8 -1.2 unknown conserved protein in bacilli compare
Psyr_3462 -0.8 -2.6 conserved hypothetical protein compare
Psyr_1499 -0.8 -2.3 Protein of unknown function DUF compare
Psyr_0282 -0.8 -2.8 Binding-protein-dependent transport systems inner membrane component compare
Psyr_0666 -0.8 -1.8 transport system permease protein compare
Psyr_3014 -0.8 -2.1 protoporphyrin IX magnesium-chelatase compare
Psyr_0849 -0.8 -4.7 CDP-diacylglycerol--serine O-phosphatidyltransferase compare
Psyr_2829 -0.8 -1.6 conserved hypothetical protein compare
Psyr_4470 -0.8 -2.4 ABC transporter compare
Psyr_3947 -0.8 -1.5 Methyltransferase, putative compare
Psyr_0493 -0.8 -1.4 CheW-like protein compare
Psyr_1800 -0.8 -2.4 transcriptional regulator, LysR family compare
Psyr_1816 -0.8 -2.1 transcriptional regulator, GntR family compare
Psyr_4464 -0.8 -1.1 lipoprotein, putative compare
Psyr_4141 -0.8 -2.3 ABC transporter compare
Psyr_2330 -0.8 -1.9 FAD dependent oxidoreductase compare
Psyr_1864 -0.7 -2.2 spermidine synthase compare
Psyr_0914 -0.7 -5.4 Glycosyl transferase, group 1 compare
Psyr_4465 -0.7 -1.0 conserved domain protein compare
Psyr_3886 -0.7 -1.5 methionyl-tRNA synthetase compare
Psyr_5135 -0.7 -0.5 Protein of unknown function DUF37 compare
Psyr_4627 -0.7 -2.0 dimethyladenosine transferase compare
Psyr_0393 -0.7 -2.3 Protein of unknown function DUF971 compare
Psyr_0378 -0.7 -4.9 Glycosyl transferase, family 2 compare
Psyr_0916 -0.7 -5.0 GDP-mannose 4,6-dehydratase compare
Psyr_3644 -0.7 -1.8 prephenate dehydrogenase compare
Psyr_1751 -0.7 -2.5 PpiC-type peptidyl-prolyl cis-trans isomerase compare
Psyr_0281 -0.7 -2.1 ABC transporter compare
Psyr_0404 -0.7 -2.6 Fimbrial assembly compare
Psyr_RNA28 -0.7 -1.5 tRNA-Val compare
Psyr_1748 -0.7 -2.5 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Psyr_3796 -0.7 -2.4 transcriptional regulator, LysR family compare
Psyr_4089 -0.7 -3.3 PAS compare
Psyr_1372 -0.7 -2.9 Protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
Psyr_3637 -0.7 -5.4 Glycosyl transferase, family 4 compare
Psyr_3015 -0.7 -3.6 cobaltochelatase CobN subunit compare
Psyr_3199 -0.7 -1.6 NADH dehydrogenase subunit D / NADH dehydrogenase subunit C compare
Psyr_0535 -0.7 -1.9 toluene tolerance protein, putative compare
Psyr_0437 -0.7 -1.0 acyl carrier protein, putative compare
Psyr_2160 -0.7 -1.0 cold-shock DNA-binding protein family compare
Psyr_3258 -0.7 -1.8 conserved hypothetical protein compare
Psyr_4581 -0.7 -1.6 anthranilate synthase, component II compare
Psyr_1725 -0.7 -1.3 Protein of unknown function DUF204 compare
Psyr_3889 -0.7 -1.4 conserved hypothetical protein compare
Psyr_2680 -0.7 -1.8 Binding-protein-dependent transport systems inner membrane component compare
Psyr_1458 -0.7 -1.4 hypothetical protein compare
Psyr_2300 -0.7 -2.2 Conserved hypothetical protein 374 compare
Psyr_3425 -0.7 -1.8 Cyclic nucleotide-binding:Bacterial regulatory protein, Crp compare
Psyr_4967 -0.7 -2.5 conserved hypothetical protein compare
Psyr_0822 -0.7 -1.0 1-phosphofructokinase compare
Psyr_3093 -0.7 -1.9 conserved hypothetical protein compare
Psyr_3739 -0.7 -2.3 conserved hypothetical protein compare
Psyr_2430 -0.7 -2.2 NUDIX hydrolase compare
Psyr_2543 -0.7 -1.4 conserved hypothetical protein compare
Psyr_1556 -0.7 -1.1 hypothetical protein compare
Psyr_0579 -0.6 -4.2 RNAse R compare
Psyr_0312 -0.6 -2.8 hypothetical protein compare
Psyr_3282 -0.6 -3.2 transcriptional regulator, TetR family compare
Psyr_0490 -0.6 -3.0 CheW-like protein compare
Psyr_0827 -0.6 -2.2 pantothenate synthetase compare
Psyr_2312 -0.6 -0.9 Protein of unknown function DUF24 compare
Psyr_3826 -0.6 -1.9 Peptidyl-prolyl cis-trans isomerase, cyclophilin type compare
Psyr_0199 -0.6 -2.2 Glutathione-dependent formaldehyde-activating, GFA compare
Psyr_1198 -0.6 -1.1 type III secretion protein HrpF compare
Psyr_2636 -0.6 -2.0 TspO/MBR-related protein compare
Psyr_2826 -0.6 -2.5 hypothetical protein compare
Psyr_0919 -0.6 -4.6 Chromosome segregation ATPase-like protein compare
Psyr_0491 -0.6 -2.7 chemotaxis sensory transducer compare
Psyr_1546 -0.6 -1.8 Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen compare
Psyr_0920 -0.6 -5.5 Glycosyl transferase, group 1 compare
Psyr_1615 -0.6 -1.8 Patatin compare
Psyr_4194 -0.6 -2.0 DnaJ central region:Heat shock protein DnaJ, N-terminal:Chaperone DnaJ, C-terminal compare
Psyr_2231 -0.6 -2.3 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase compare
Psyr_2151 -0.6 -0.8 monosaccharide ABC transporter substrate-binding protein, CUT2 family compare
Psyr_5065 -0.6 -3.4 ATP-dependent DNA helicase UvrD compare
Psyr_1594 -0.6 -2.0 FKBP-type peptidyl-prolyl isomerase, N-terminal:Peptidylprolyl isomerase, FKBP-type compare
Psyr_1783 -0.6 -1.4 CDS compare
Psyr_4408 -0.6 -3.2 Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal:Histidine kinase:Histidine kinase compare
Psyr_2269 -0.6 -2.8 GTP cyclohydrolase I compare
Psyr_5133 -0.6 -2.1 tRNA modification GTPase trmE compare
Psyr_1404 -0.6 -3.5 Ferritin and Dps compare
Psyr_2531 -0.6 -1.7 transcriptional regulator, LysR family compare
Psyr_3665 -0.6 -1.9 conserved hypothetical protein compare
Psyr_2592 -0.6 -2.0 transport system permease protein compare
Psyr_0565 -0.6 -2.0 Protein of unknown function UPF0126 compare
Psyr_1357 -0.6 -2.1 RNase HII compare
Psyr_3678 -0.6 -2.5 adenosylcobinamide-phosphate synthase compare
Psyr_3848 -0.6 -2.3 L-valine ABC transporter ATP-binding protein / L-isoleucine ABC transporter ATP-binding protein / L-leucine ABC transporter ATP-binding protein compare
Psyr_2467 -0.6 -2.5 3-methylcrotonoyl-CoA carboxylase, alpha subunit compare
Psyr_2540 -0.6 -0.8 Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal compare
Psyr_2065 -0.6 -2.4 transcription elongation factor GreB compare
Psyr_0215 -0.6 -3.8 Exodeoxyribonuclease III xth compare
Psyr_0464 -0.6 -1.0 hypothetical protein compare
Psyr_0947 -0.6 -2.9 TPR repeat protein:TPR repeat protein compare
Psyr_0528 -0.6 -1.6 Carbamoyltransferase compare
Psyr_3945 -0.6 -2.6 secreted protein-like protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas syringae pv. syringae B728a in stress experiments

For stress Physcion across organisms