Experiment set9IT037 for Pseudomonas syringae pv. syringae B728a

Compare to:

KB with Physcion 10 mM

200 most detrimental genes:

  gene name fitness t score description  
Psyr_4480 +1.4 3.1 outer membrane transport energization protein TonB compare
Psyr_4155 +1.3 2.1 Protein of unknown function DUF615 compare
Psyr_3611 +1.2 4.4 Protein of unknown function DUF815 compare
Psyr_3446 +1.1 2.4 Surface presentation of antigens (SPOA) protein compare
Psyr_2253 +1.1 3.5 Phosphonate metabolism compare
Psyr_4224 +1.0 1.9 conserved hypothetical protein compare
Psyr_1067 +1.0 3.4 GTP cyclohydrolase subunit MoaC compare
Psyr_1895 +1.0 1.8 conserved hypothetical protein compare
Psyr_0248 +1.0 2.1 conserved hypothetical protein compare
Psyr_1250 +1.0 2.5 conserved hypothetical protein compare
Psyr_2778 +0.9 3.6 Phage minor tail protein L compare
Psyr_0435 +0.9 1.6 membrane protein, putative compare
Psyr_2906 +0.9 2.2 Pilus retraction protein PilT compare
Psyr_0137 +0.9 1.5 outer membrane transport energization protein ExbD compare
Psyr_0425 +0.9 2.7 Beta-ketoacyl synthase:Beta-ketoacyl synthase compare
Psyr_3702 +0.9 1.5 Arsenate reductase compare
Psyr_2190 +0.9 2.6 NADH:flavin oxidoreductase/NADH oxidase compare
Psyr_1111 +0.9 1.4 Response regulator receiver:Transcriptional regulatory protein, C-terminal compare
Psyr_4285 +0.8 2.7 Ferredoxin:[2Fe-2S]-binding protein compare
Psyr_1832 +0.8 2.0 Exonuclease compare
Psyr_4801 +0.8 2.1 Outer membrane efflux protein compare
Psyr_3703 +0.8 2.7 Flavodoxin/nitric oxide synthase compare
Psyr_3867 +0.8 1.1 hypothetical protein compare
Psyr_2695 +0.8 1.9 conserved hypothetical protein compare
Psyr_2507 +0.8 2.8 Endoribonuclease L-PSP compare
Psyr_2434 +0.8 2.4 Carbohydrate kinase, PfkB compare
Psyr_1629 +0.8 2.8 Glutathione S-transferase, N-terminal:Glutathione S-transferase, C-terminal compare
Psyr_2285 +0.8 1.5 Twin-arginine translocation pathway signal compare
Psyr_0858 +0.8 2.2 conserved hypothetical protein compare
Psyr_0426 +0.8 1.4 lipoprotein, putative compare
Psyr_2272 +0.8 2.5 Helix-turn-helix motif protein compare
Psyr_2262 +0.8 2.0 Peptidase M20:Peptidase M20 compare
Psyr_2984 +0.8 1.0 conserved hypothetical protein compare
Psyr_2243 +0.8 1.8 Endoribonuclease L-PSP compare
Psyr_3121 +0.8 1.6 Protein of unknown function DUF1345 compare
Psyr_3083 +0.7 1.7 RND efflux system, outer membrane lipoprotein, NodT compare
Psyr_4160 +0.7 3.2 Maf-like protein compare
Psyr_2292 +0.7 1.2 L-glutaminase compare
Psyr_1154 +0.7 1.8 Copper/Zinc superoxide dismutase compare
Psyr_0896 +0.7 3.4 Aldose 1-epimerase compare
Psyr_2501 +0.7 1.3 Hemerythrin compare
Psyr_5029 +0.7 1.5 Rubredoxin-type Fe(Cys)4 protein compare
Psyr_0434 +0.7 2.0 AMP-dependent synthetase and ligase compare
Psyr_1335 +0.7 3.2 Aminotransferase, class V compare
Psyr_2395 +0.7 2.3 transcriptional regulator, LysR family compare
Psyr_1888 +0.7 2.5 CDS compare
Psyr_2387 +0.7 2.4 Malate:quinone-oxidoreductase compare
Psyr_2055 +0.7 3.2 Transglutaminase-like protein compare
Psyr_4860 +0.7 1.2 Integrase, catalytic region compare
Psyr_4116 +0.7 0.9 Transport-associated protein compare
Psyr_1202 +0.7 1.8 negative regulator of hrp expression HrpV compare
Psyr_3555 +0.6 1.2 aspartate kinase compare
Psyr_0792 +0.6 2.2 conserved hypothetical protein compare
Psyr_2393 +0.6 2.9 Flavin reductase-like protein compare
Psyr_4716 +0.6 1.8 Sarcosine oxidase, gamma subunit, heterotetrameric compare
Psyr_0373 +0.6 1.8 CDS compare
Psyr_1334 +0.6 1.7 Cysteine desulfuration protein SufE compare
Psyr_0153 +0.6 1.9 conserved hypothetical protein compare
Psyr_2860 +0.6 1.6 hypothetical protein compare
Psyr_2570 +0.6 2.6 monosaccharide ABC transporter membrane protein, CUT2 family compare
Psyr_2765 +0.6 1.6 conserved domain protein compare
Psyr_3779 +0.6 2.0 GCN5-related N-acetyltransferase compare
Psyr_1222 +0.6 0.7 CDS compare
Psyr_2787 +0.6 1.4 hypothetical protein compare
Psyr_4417 +0.6 1.1 Ferredoxin--nitrite reductase compare
Psyr_0954 +0.6 1.5 Protein of unknown function UPF0153 compare
Psyr_2734 +0.6 2.1 benzaldehyde dehydrogenase (NAD+) compare
Psyr_0962 +0.6 3.0 transcriptional regulator, MerR family compare
Psyr_4596 +0.6 1.9 conserved hypothetical protein compare
Psyr_2737 +0.6 1.7 hypothetical protein compare
Psyr_0789 +0.6 2.7 chemotaxis sensory transducer compare
Psyr_4466 +0.6 2.0 Thioredoxin compare
Psyr_4257 +0.6 1.8 Uncharacterized protein UPF0114 compare
Psyr_0432 +0.6 1.4 conserved hypothetical protein compare
Psyr_0081 +0.6 1.4 ABC transporter compare
Psyr_4692 +0.6 1.8 ABC transporter compare
Psyr_0194 +0.6 2.3 Short-chain dehydrogenase/reductase SDR compare
Psyr_0145 +0.6 2.1 conserved hypothetical protein compare
Psyr_1402 +0.6 2.0 SlyX compare
Psyr_3066 +0.6 2.3 conserved hypothetical protein compare
Psyr_0356 +0.6 0.6 L-cystine ABC transporter ATP-binding protein / Diaminopimelate ABC transporter ATP-binding protein compare
Psyr_5036 +0.6 1.7 Response regulator receiver compare
Psyr_1843 +0.5 1.1 Protein of unknown function DUF1311 compare
Psyr_3589 +0.5 2.1 Response regulator receiver:Transcriptional regulatory protein, C-terminal compare
Psyr_1039 +0.5 1.1 FecR protein compare
Psyr_0046 +0.5 1.5 conserved hypothetical protein compare
Psyr_1337 +0.5 1.7 Conserved hypothetical protein ArsC related protein compare
Psyr_2867 +0.5 1.9 ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal compare
Psyr_3830 +0.5 2.5 3-oxoacyl-[acyl-carrier protein] synthase compare
Psyr_2987 +0.5 2.2 Cof protein:HAD-superfamily hydrolase, subfamily IIB compare
Psyr_3673 +0.5 0.7 Phosphoglycerate/bisphosphoglycerate mutase compare
Psyr_1992 +0.5 0.9 Zinc-containing alcohol dehydrogenase superfamily compare
Psyr_0630 +0.5 2.7 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
Psyr_2251 +0.5 1.0 Phosphonate metabolism PhnG compare
Psyr_0907 +0.5 1.7 conserved hypothetical protein compare
Psyr_1318 +0.5 3.4 Phosphoenolpyruvate carboxylase compare
Psyr_3882 +0.5 0.8 conserved hypothetical protein compare
Psyr_1600 +0.5 1.7 Zinc-containing alcohol dehydrogenase superfamily compare
Psyr_1970 +0.5 2.0 Secretion protein HlyD compare
Psyr_2894 +0.5 1.3 conserved hypothetical protein compare
Psyr_1678 +0.5 0.8 Hypothetical protein compare
Psyr_2418 +0.5 2.1 shikimate dehydrogenase compare
Psyr_0645 +0.5 1.6 3-ketoacyl-CoA thiolase compare
Psyr_2918 +0.5 2.3 3-hydroxyacyl-CoA dehydrogenase, C-terminal:3-hydroxyacyl-CoA dehydrogenase, NAD-binding protein compare
Psyr_3460 +0.5 1.4 PAS/PAC sensor signal transduction histidine kinase compare
Psyr_3018 +0.5 1.3 membrane protein, putative compare
Psyr_3081 +0.5 1.5 Secretion protein HlyD compare
Psyr_2481 +0.5 1.7 thiol peroxidase (atypical 2-Cys peroxiredoxin) compare
Psyr_0252 +0.5 2.1 adenylate cyclase compare
Psyr_2039 +0.5 0.8 Fimbrial protein compare
Psyr_3507 +0.5 1.3 membrane protein, putative compare
Psyr_2713 +0.5 2.4 transcriptional regulator, LysR family compare
Psyr_2225 +0.5 1.3 methenyltetrahydrofolate cyclohydrolase / 5,10-methylenetetrahydrofolate dehydrogenase (NADP+) compare
Psyr_2195 +0.5 2.1 Urease accessory protein UreD compare
Psyr_3004 +0.5 1.3 transcriptional regulator, LysR family compare
Psyr_4730 +0.5 0.9 FecR protein compare
Psyr_2428 +0.5 1.7 GCN5-related N-acetyltransferase compare
Psyr_1280 +0.5 2.1 Cytochrome c assembly protein compare
Psyr_2255 +0.5 0.6 ABC transporter compare
Psyr_3562 +0.5 1.5 succinylglutamic semialdehyde dehydrogenase compare
Psyr_1718 +0.5 1.2 von Willebrand factor, type A compare
Psyr_4077 +0.5 1.4 Methylated-DNA-[protein]-cysteine S-methyltransferase compare
Psyr_0889 +0.5 1.7 SpoVT/AbrB-like protein compare
Psyr_1903 +0.5 1.5 conserved hypothetical protein compare
Psyr_2759 +0.5 1.8 Eukaryotic-like DNA topoisomerase I compare
Psyr_4113 +0.5 3.2 LppC putative lipoprotein compare
Psyr_2781 +0.5 1.5 hypothetical protein compare
Psyr_3696 +0.5 1.4 23S rRNA m(5)U-1939 methyltransferase compare
Psyr_1780 +0.5 0.9 transcriptional regulator, TetR family compare
Psyr_2919 +0.5 2.0 conserved hypothetical protein compare
Psyr_2868 +0.5 2.1 Response regulator receiver:Transcriptional regulatory protein, C-terminal compare
Psyr_0562 +0.5 1.6 OmpA/MotB compare
Psyr_0781 +0.5 1.7 Protein-glutamate methylesterase compare
Psyr_4125 +0.5 1.5 Protein of unknown function DUF1043 compare
Psyr_2126 +0.5 1.2 4-carboxymuconolactone decarboxylase compare
Psyr_3133 +0.5 0.6 Amidohydrolase 2 compare
Psyr_2588 +0.5 0.8 HpcH/HpaI aldolase compare
Psyr_2690 +0.4 1.7 Glycosyl transferase, family 2 compare
Psyr_4050 +0.4 1.2 Protein of unknown function DUF479 compare
Psyr_2388 +0.4 1.9 Twin-arginine translocation pathway signal compare
Psyr_3256 +0.4 1.6 multisubunit potassium/proton antiporter, PhaF subunit compare
Psyr_1130 +0.4 1.5 conserved hypothetical protein compare
Psyr_0253 +0.4 2.5 acetylornithine deacetylase compare
Psyr_2053 +0.4 1.7 moxR protein, putative compare
Psyr_1449 +0.4 1.4 hypothetical protein compare
Psyr_2352 +0.4 2.1 GCN5-related N-acetyltransferase compare
Psyr_4087 +0.4 0.7 Protein of unknown function DUF520 compare
Psyr_2205 +0.4 2.5 amino acid/amide ABC transporter substrate-binding protein, HAAT family compare
Psyr_1811 +0.4 1.1 transcriptional regulator, GntR family compare
Psyr_2294 +0.4 0.7 conserved hypothetical protein compare
Psyr_2415 +0.4 1.3 hypothetical protein compare
Psyr_2134 +0.4 0.6 protein of unknown function DUF903 compare
Psyr_0960 +0.4 1.9 conserved hypothetical protein compare
Psyr_1911 +0.4 1.5 conserved hypothetical protein compare
Psyr_1107 +0.4 2.0 Sigma-70 region 2 compare
Psyr_1659 +0.4 1.8 Protein of unknown function DUF1285 compare
Psyr_0406 +0.4 1.8 Pilus assembly protein, PilQ compare
Psyr_4478 +0.4 2.3 Alpha/beta hydrolase fold protein compare
Psyr_3127 +0.4 1.5 Response regulator receiver:Transcriptional regulatory protein, C-terminal compare
Psyr_2552 +0.4 1.5 cyclase/dehydrase compare
Psyr_1716 +0.4 1.3 conserved hypothetical protein compare
Psyr_4802 +0.4 1.3 Secretion protein HlyD compare
Psyr_2732 +0.4 2.2 conserved hypothetical protein; putative signal peptide compare
Psyr_2646 +0.4 3.0 Radical SAM compare
Psyr_1193 +0.4 1.0 type III helper protein HrpZ1 compare
Psyr_2405 +0.4 2.0 transcriptional regulator, GntR family compare
Psyr_3346 +0.4 1.4 conserved hypothetical protein compare
Psyr_0840 +0.4 1.7 Pentapeptide repeat protein compare
Psyr_3585 +0.4 1.2 Sua5/YciO/YrdC/YwlC compare
Psyr_3566 +0.4 1.4 transcriptional regulator, AraC family compare
Psyr_2446 +0.4 1.5 MCP methyltransferase, CheR-type compare
Psyr_3337 +0.4 1.1 gluconate kinase, SKI family compare
Psyr_0315 +0.4 1.3 Protein of unknown function DUF589 compare
Psyr_4578 +0.4 2.0 conserved hypothetical protein compare
Psyr_1497 +0.4 1.6 Heavy metal response regulator compare
Psyr_2442 +0.4 1.6 precorrin-6A synthase (deacetylating) compare
Psyr_1752 +0.4 1.9 transcriptional regulator, HxlR family compare
Psyr_3748 +0.4 2.3 GCN5-related N-acetyltransferase compare
Psyr_4128 +0.4 2.2 sulfate adenylyltransferase subunit 2 compare
Psyr_0806 +0.4 2.3 conserved hypothetical protein compare
Psyr_2448 +0.4 1.3 Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal compare
Psyr_0283 +0.4 1.9 NLPA lipoprotein compare
Psyr_1298 +0.4 1.9 exonuclease RecJ compare
Psyr_3456 +0.4 2.2 Flagellar motor switch protein FliG compare
Psyr_2779 +0.4 1.2 Phage minor tail compare
Psyr_2219 +0.4 1.5 transcriptional regulator, LysR family compare
Psyr_3262 +0.4 0.8 dnaK suppressor protein, putative compare
Psyr_3711 +0.4 2.3 Dienelactone hydrolase compare
Psyr_4383 +0.4 1.9 esterase/lipase/thioesterase family protein compare
Psyr_3122 +0.4 2.6 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding protein compare
Psyr_3198 +0.4 0.9 NADH dehydrogenase subunit B compare
Psyr_1074 +0.4 2.3 amino acid ABC transporter membrane protein 2, PAAT family compare
Psyr_4481 +0.4 1.3 outer membrane transport energization protein ExbB compare
Psyr_2100 +0.4 1.9 assimilatory nitrate reductase (NADH) beta subunit compare
Psyr_2520 +0.4 0.6 SOS-response transcriptional repressor, LexA compare
Psyr_4044 +0.4 1.2 Phospholipase D/Transphosphatidylase compare
Psyr_3475 +0.4 0.9 Flagellar basal body rod protein:Protein of unknown function DUF1078 compare
Psyr_2692 +0.4 1.3 Polysaccharide deacetylase compare
Psyr_2563 +0.4 1.2 HAD-superfamily hydrolase, subfamily IIA compare
Psyr_2847 +0.4 1.3 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas syringae pv. syringae B728a in stress experiments

For stress Physcion across organisms