Experiment set9IT037 for Bifidobacterium breve UCC2003
diet=StandardDiet2; sample=FecalPellet; mouse16; day2
Group: mouseMedia: + diet=StandardDiet2; sample=FecalPellet
Culturing: Bifido_ML2
By: Anthony Shiver on 8/20/2020
Specific Phenotypes
For 6 genes in this experiment
For mouse diet=StandardDiet2; sample=FecalPellet in Bifidobacterium breve UCC2003
For mouse diet=StandardDiet2; sample=FecalPellet across organisms
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| Arginine and Ornithine Degradation | 1 |
| De Novo Pyrimidine Synthesis | 1 |
| Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| L-glutamate degradation II | 2 | 2 | 1 |
| L-aspartate degradation II (aerobic) | 3 | 2 | 1 |
| L-aspartate degradation III (anaerobic) | 3 | 2 | 1 |
| superpathway of L-aspartate and L-asparagine biosynthesis | 4 | 2 | 1 |
| UMP biosynthesis II | 6 | 6 | 1 |
| L-canavanine degradation II | 6 | 1 | 1 |