Experiment set9IT036 for Bifidobacterium breve UCC2003

Compare to:

diet=HighFatHighSugar; sample=FecalPellet; mouse15; day2

200 most important genes:

  gene name fitness t score description  
BBR_RS16300 -8.0 -5.5 pyridoxamine 5'-phosphate oxidase family protein compare
BBR_RS20720 -7.1 -4.9 DUF4422 domain-containing protein compare
BBR_RS16820 -6.8 -4.7 RNA polymerase sigma factor RpoE compare
BBR_RS12045 -6.8 -4.7 hypothetical protein compare
BBR_RS20200 -6.6 -33.6 alpha-galactosidase compare
BBR_RS12905 -6.4 -4.0 galactose-1-phosphate uridylyltransferase compare
BBR_RS12910 -6.4 -19.9 galactokinase compare
BBR_RS20245 -6.3 -39.1 cation-translocating P-type ATPase compare
BBR_RS14540 -6.2 -4.3 Na+/H+ antiporter NhaA compare
BBR_RS12310 -6.1 -3.1 signal recognition particle protein compare
BBR_RS10285 -6.1 -3.0 membrane protein compare
BBR_RS13375 -6.1 -6.0 phosphoribosylformylglycinamidine cyclo-ligase compare
BBR_RS17455 -5.8 -11.0 DNA-binding response regulator compare
BBR_RS20180 -5.8 -17.2 carbohydrate ABC transporter permease compare
BBR_RS14230 -5.7 -4.0 HAMP domain-containing histidine kinase compare
BBR_RS21170 -5.7 -6.8 membrane protein insertion efficiency factor YidD compare
BBR_RS14220 -5.6 -9.0 phosphomannomutase compare
BBR_RS12590 -5.6 -3.9 beta-1,6-N-acetylglucosaminyltransferase compare
BBR_RS12605 -5.6 -3.9 glycosyltransferase family 2 protein compare
BBR_RS16540 -5.6 -6.2 XRE family transcriptional regulator compare
BBR_RS13820 -5.5 -1.6 ATP-binding protein compare
BBR_RS13770 -5.5 -3.8 DNA repair protein RecO compare
BBR_RS13805 -5.4 -2.7 hypothetical protein compare
BBR_RS20190 -5.2 -19.6 Raffinose-binding protein compare
BBR_RS19270 -5.2 -1.5 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase compare
BBR_RS13445 -5.2 -15.9 phosphoribosylformylglycinamidine synthase compare
BBR_RS12370 -5.2 -1.5 cell division protein compare
BBR_RS20195 -5.1 -17.9 ROK family transcriptional regulator compare
BBR_RS20185 -5.1 -16.0 sugar ABC transporter permease compare
BBR_RS20885 -5.0 -1.5 hypothetical protein compare
BBR_RS10625 -5.0 -2.8 FHA domain-containing protein compare
BBR_RS16425 -5.0 -3.5 DUF3071 domain-containing protein compare
BBR_RS10755 -4.9 -3.4 adenylosuccinate synthase compare
BBR_RS18755 -4.9 -2.8 30S ribosome-binding factor RbfA compare
BBR_RS15440 -4.9 -3.4 orotidine-5'-phosphate decarboxylase compare
BBR_RS18690 -4.8 -9.3 diacylglycerol kinase compare
BBR_RS15085 -4.8 -2.4 3-dehydroquinate synthase compare
BBR_RS10720 -4.8 -20.2 PDZ domain-containing protein compare
BBR_RS16675 -4.8 -3.3 prephenate dehydrogenase/arogenate dehydrogenase family protein compare
BBR_RS13455 -4.8 -3.3 formate-dependent phosphoribosylglycinamide formyltransferase compare
BBR_RS15845 -4.8 -2.0 hypothetical protein compare
BBR_RS13380 -4.8 -9.8 amidophosphoribosyltransferase compare
BBR_RS19905 -4.8 -1.4 methionine--tRNA ligase compare
BBR_RS16555 -4.7 -1.4 DNA translocase FtsK compare
BBR_RS10905 -4.7 -6.3 nucleotide exchange factor GrpE compare
BBR_RS12545 -4.7 -5.5 DUF4012 domain-containing protein compare
BBR_RS15435 -4.7 -3.2 dihydroorotase compare
BBR_RS11510 -4.6 -1.9 signal recognition particle-docking protein FtsY compare
BBR_RS15080 -4.5 -3.1 chorismate synthase compare
BBR_RS15455 -4.4 -2.9 orotate phosphoribosyltransferase compare
BBR_RS15915 -4.4 -1.8 type II toxin-antitoxin system antitoxin, RelB/DinJ family compare
BBR_RS13635 -4.4 -3.0 carbamoyl-phosphate synthase large subunit compare
BBR_RS16635 -4.4 -3.0 ABC transporter ATP-binding protein compare
BBR_RS11720 -4.3 -5.9 DUF2469 domain-containing protein compare
BBR_RS16750 -4.3 -3.0 ParA family protein compare
BBR_RS13300 -4.3 -2.2 5-(carboxyamino)imidazole ribonucleotide synthase compare
BBR_RS10615 -4.3 -3.1 FtsW/RodA/SpoVE family cell cycle protein compare
BBR_RS14215 -4.3 -4.3 peptidase compare
BBR_RS12880 -4.2 -7.9 Crp/Fnr family transcriptional regulator compare
BBR_RS16430 -4.2 -3.4 nucleotide pyrophosphatase compare
BBR_RS15070 -4.2 -4.3 endolytic transglycosylase MltG compare
BBR_RS17510 -4.2 -7.4 VWA domain-containing protein compare
BBR_RS15425 -4.1 -2.8 aspartate carbamoyltransferase compare
BBR_RS13125 -4.0 -1.5 ABC transporter permease compare
BBR_RS19070 -4.0 -1.7 50S ribosomal protein L33 compare
BBR_RS18215 -4.0 -8.0 AI-2E family transporter compare
BBR_RS12555 -4.0 -5.0 protein-tyrosine-phosphatase compare
BBR_RS19465 -3.9 -3.2 ribonuclease E/G compare
BBR_RS15805 -3.9 -6.7 prolipoprotein diacylglyceryl transferase compare
BBR_RS10620 -3.8 -2.6 phosphoprotein phosphatase compare
BBR_RS11470 -3.8 -1.6 6-phosphogluconolactonase compare
BBR_RS20435 -3.8 -1.1 CCA tRNA nucleotidyltransferase compare
BBR_RS19450 -3.8 -1.8 GTPase ObgE compare
BBR_RS19125 -3.7 -10.3 hypothetical protein compare
BBR_RS10900 -3.7 -2.6 molecular chaperone DnaK compare
BBR_RS18735 -3.7 -9.5 hypothetical protein compare
BBR_RS19390 -3.7 -2.4 hypothetical protein compare
BBR_RS20480 -3.7 -1.1 membrane protein compare
BBR_RS13705 -3.6 -4.5 Conserved hypothetical membrane spanning protein, contains a vitamin K epoxide reductase domain compare
BBR_RS17500 -3.6 -6.6 hypothetical protein compare
BBR_RS16650 -3.6 -8.2 ABC transporter substrate-binding protein compare
BBR_RS12610 -3.5 -4.4 capsular polysaccharide biosynthesis protein compare
BBR_RS15090 -3.5 -1.4 type II 3-dehydroquinate dehydratase compare
BBR_RS10580 -3.5 -3.1 septation inhibitor protein compare
BBR_RS18955 -3.5 -9.1 bifunctional acetaldehyde-CoA/alcohol dehydrogenase compare
BBR_RS14260 -3.5 -1.4 ABC transporter ATP-binding protein compare
BBR_RS20775 -3.5 -1.6 DUF4230 domain-containing protein compare
BBR_RS12895 -3.4 -8.2 quinone-dependent dihydroorotate dehydrogenase compare
BBR_RS14370 -3.4 -4.6 3-phosphoshikimate 1-carboxyvinyltransferase compare
BBR_RS16965 -3.4 -2.3 ATP-dependent DNA helicase compare
BBR_RS19740 -3.3 -11.3 DUF2142 domain-containing protein compare
BBR_RS15055 -3.3 -2.3 hypothetical protein compare
BBR_RS19190 -3.3 -7.4 3-deoxy-7-phosphoheptulonate synthase compare
BBR_RS18180 -3.3 -6.6 ATP-dependent zinc metalloprotease FtsH compare
BBR_RS10740 -3.3 -1.8 tRNA-Gly compare
BBR_RS18795 -3.2 -4.2 tRNA pseudouridine(38-40) synthase TruA compare
BBR_RS16640 -3.2 -3.4 ABC transporter permease compare
BBR_RS16255 -3.1 -2.5 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE compare
BBR_RS19260 -3.1 -11.4 hypothetical protein compare
BBR_RS13370 -3.1 -2.7 phosphoribosylamine--glycine ligase compare
BBR_RS15785 -3.1 -2.2 CDP-alcohol phosphatidyltransferase family protein compare
BBR_RS13040 -3.0 -2.1 CHAP domain-containing protein compare
BBR_RS10990 -3.0 -6.3 recombination protein RecR compare
BBR_RS16950 -3.0 -1.8 hypothetical protein compare
BBR_RS10565 -3.0 -15.5 glycogen/starch/alpha-glucan family phosphorylase compare
BBR_RS16490 -3.0 -3.5 polyprenyl synthase compare
BBR_RS17490 -3.0 -8.3 MoxR family ATPase compare
BBR_RS19160 -3.0 -1.2 phosphate ABC transporter permease subunit PstC compare
BBR_RS13630 -2.9 -5.2 carbamoyl-phosphate synthase small subunit compare
BBR_RS15520 -2.9 -3.5 shikimate 5-dehydrogenase compare
BBR_RS12620 -2.8 -6.4 glycosyltransferase family 1 protein compare
BBR_RS11135 -2.8 -9.2 dihydrodipicolinate synthase family protein compare
BBR_RS12550 -2.8 -7.6 sugar transferase compare
BBR_RS11770 -2.8 -3.6 chorismate mutase compare
BBR_RS13035 -2.8 -1.7 ABC transporter permease compare
BBR_RS12375 -2.7 -1.4 pantetheine-phosphate adenylyltransferase compare
BBR_RS12235 -2.7 -0.8 hypothetical protein compare
BBR_RS10265 -2.6 -7.0 DNA replication and repair protein RecF compare
BBR_RS12980 -2.6 -9.6 ATP-dependent DNA helicase UvrD/REP family compare
BBR_RS19120 -2.6 -8.7 helicase compare
BBR_RS18565 -2.6 -1.4 CHAP domain-containing protein compare
BBR_RS11415 -2.6 -7.4 amino acid ABC transporter substrate-binding protein compare
BBR_RS17505 -2.5 -6.4 VWA domain-containing protein compare
BBR_RS19795 -2.5 -10.9 hypothetical protein compare
BBR_RS15650 -2.5 -1.8 Holliday junction resolvase compare
BBR_RS10890 -2.5 -8.3 LacI family transcriptional regulator compare
BBR_RS15675 -2.5 -3.7 ADP-forming succinate--CoA ligase subunit beta compare
BBR_RS15665 -2.5 -2.0 preprotein translocase subunit YajC compare
BBR_RS17640 -2.5 -2.0 DNA-directed RNA polymerase subunit omega compare
BBR_RS20455 -2.5 -5.5 thioredoxin-disulfide reductase compare
BBR_RS20465 -2.4 -5.9 chromosome partitioning protein compare
BBR_RS14210 -2.4 -1.6 hypothetical protein compare
BBR_RS15655 -2.4 -3.0 Holliday junction branch migration protein RuvA compare
BBR_RS18745 -2.4 -1.0 bifunctional riboflavin kinase/FMN adenylyltransferase compare
BBR_RS15660 -2.4 -3.3 Holliday junction branch migration DNA helicase RuvB compare
BBR_RS18595 -2.4 -8.4 1,4-dihydroxy-2-naphthoate octaprenyltransferase compare
BBR_RS11660 -2.4 -10.6 YHS domain-containing protein compare
BBR_RS16905 -2.4 -3.1 hypothetical protein compare
BBR_RS11540 -2.4 -1.4 DUF1727 domain-containing protein compare
BBR_RS14205 -2.4 -1.6 hypothetical protein compare
BBR_RS12900 -2.3 -1.4 DeoR/GlpR transcriptional regulator compare
BBR_RS21165 -2.3 -1.0 hypothetical protein compare
BBR_RS13450 -2.3 -1.4 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
BBR_RS13030 -2.3 -1.6 cell division ATP-binding protein FtsE compare
BBR_RS11245 -2.3 -8.6 MFS transporter compare
BBR_RS18050 -2.2 -3.0 threonylcarbamoyl-AMP synthase compare
BBR_RS13905 -2.2 -3.4 ornithine carbamoyltransferase compare
BBR_RS12975 -2.2 -7.7 ATP-dependent DNA helicase UvrD/REP family compare
BBR_RS12450 -2.2 -1.7 signal peptidase I compare
BBR_RS12305 -2.2 -4.1 endonuclease/exonuclease/phosphatase family protein compare
BBR_RS11805 -2.2 -2.6 hypothetical protein compare
BBR_RS14585 -2.2 -1.0 hypothetical protein compare
BBR_RS17290 -2.2 -4.8 Fused ATP-binding protein and permease of ABC transporter compare
BBR_RS19655 -2.1 -6.1 hypothetical protein compare
BBR_RS19010 -2.1 -8.8 glycoside hydrolase family 1 protein compare
BBR_RS16530 -2.1 -2.7 recombinase RecA compare
BBR_RS19755 -2.1 -6.3 glycosyl transferase compare
BBR_RS19395 -2.1 -1.6 hypothetical protein compare
BBR_RS10780 -2.1 -8.6 sucrose phosphorylase compare
BBR_RS14380 -2.0 -6.5 phosphate acetyltransferase compare
BBR_RS16620 -2.0 -2.5 DUF3159 domain-containing protein compare
BBR_RS16885 -2.0 -4.6 carbohydrate kinase compare
BBR_RS15560 -2.0 -3.1 aminotransferase class V-fold PLP-dependent enzyme compare
BBR_RS16285 -2.0 -3.2 magnesium transporter CorA family protein compare
BBR_RS11410 -2.0 -8.3 iron permease compare
BBR_RS20450 -1.9 -10.9 murein biosynthesis integral membrane protein MurJ compare
BBR_RS18635 -1.9 -3.1 PspC domain-containing protein compare
BBR_RS12500 -1.9 -0.8 sugar ABC transporter permease compare
BBR_RS14490 -1.9 -4.3 ribonuclease D compare
BBR_RS15670 -1.9 -1.8 adenine phosphoribosyltransferase compare
BBR_RS10980 -1.9 -6.3 TetR/AcrR family transcriptional regulator compare
BBR_RS12820 -1.9 -4.7 hypothetical protein compare
BBR_RS10445 -1.9 -8.6 HlyC/CorC family transporter compare
BBR_RS13070 -1.8 -0.5 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
BBR_RS19095 -1.8 -7.0 magnesium transporter compare
BBR_RS12355 -1.8 -2.0 ribonuclease III compare
BBR_RS20375 -1.8 -10.8 glycosyl hydrolase compare
BBR_RS17495 -1.8 -4.0 DUF58 domain-containing protein compare
BBR_RS12365 -1.8 -3.2 DUF177 domain-containing protein compare
BBR_RS19645 -1.8 -5.3 RNA degradosome polyphosphate kinase compare
BBR_RS11255 -1.7 -5.3 hypothetical protein compare
BBR_RS17970 -1.7 -5.7 gfo/Idh/MocA family oxidoreductase compare
BBR_RS19055 -1.7 -1.2 ferredoxin family protein compare
BBR_RS16755 -1.7 -2.5 site-specific tyrosine recombinase XerD compare
BBR_RS16670 -1.6 -1.5 hypothetical protein compare
BBR_RS16250 -1.6 -1.9 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB compare
BBR_RS16240 -1.6 -2.2 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD compare
BBR_RS17990 -1.6 -4.6 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase compare
BBR_RS12785 -1.6 -1.8 transcriptional regulator compare
BBR_RS12600 -1.6 -2.2 serine acetyltransferase compare
BBR_RS13735 -1.6 -0.9 Lon protease compare
BBR_RS12295 -1.6 -0.8 RNA-binding protein compare
BBR_RS19155 -1.6 -3.2 phosphate ABC transporter, permease protein PstA compare
BBR_RS16810 -1.6 -5.3 aldose 1-epimerase compare
BBR_RS12385 -1.6 -5.4 oxidoreductase compare
BBR_RS20415 -1.6 -6.7 G5 domain-containing protein compare
BBR_RS17515 -1.5 -4.0 hypothetical protein compare
BBR_RS10570 -1.5 -2.4 hypothetical protein compare
BBR_RS14190 -1.5 -4.3 transcriptional regulator compare
BBR_RS11675 -1.4 -1.0 hypothetical protein compare


Specific Phenotypes

For 1 genes in this experiment

For mouse diet=HighFatHighSugar; sample=FecalPellet in Bifidobacterium breve UCC2003

For mouse diet=HighFatHighSugar; sample=FecalPellet across organisms