Experiment set9IT035 for Bifidobacterium breve UCC2003
diet=HighFatHighSugar; sample=FecalPellet; mouse14; day2
Group: mouseMedia: + diet=HighFatHighSugar; sample=FecalPellet
Culturing: Bifido_ML2
By: Anthony Shiver on 8/20/2020
Specific Phenotypes
For 3 genes in this experiment
For mouse diet=HighFatHighSugar; sample=FecalPellet in Bifidobacterium breve UCC2003
For mouse diet=HighFatHighSugar; sample=FecalPellet across organisms
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| Chorismate Synthesis | 1 |
| Phenylalanine and Tyrosine Branches from Chorismate | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Phenylalanine, tyrosine and tryptophan biosynthesis
- Biosynthesis of phenylpropanoids
- Biosynthesis of alkaloids derived from shikimate pathway
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| L-phenylalanine biosynthesis III (cytosolic, plants) | 2 | 2 | 1 |
| methylglyoxal degradation III | 2 | 1 | 1 |
| L-phenylalanine biosynthesis I | 3 | 3 | 1 |
| superpathway of methylglyoxal degradation | 8 | 2 | 1 |
| superpathway of L-phenylalanine biosynthesis | 10 | 10 | 1 |
| detoxification of reactive carbonyls in chloroplasts | 10 | 1 | 1 |
| superpathway of aromatic amino acid biosynthesis | 18 | 18 | 1 |
| superpathway of chorismate metabolism | 59 | 32 | 1 |