Experiment set9IT034 for Cupriavidus basilensis FW507-4G11

Compare to:

Defined media with exometabolites; 10% oxygen; 5 mM nitrate

200 most important genes:

  gene name fitness t score description  
RR42_RS32740 -3.7 -1.7 enoyl-CoA hydratase compare
RR42_RS12925 -3.1 -2.1 ATPase compare
RR42_RS01720 -3.0 -2.0 membrane protein compare
RR42_RS19005 -2.7 -18.0 3-dehydroquinate synthase compare
RR42_RS12040 -2.5 -12.6 MFS transporter compare
RR42_RS18385 -2.5 -2.0 hypothetical protein compare
RR42_RS07555 -2.4 -1.6 potassium transporter Kup compare
RR42_RS05860 -2.3 -6.4 phospho-2-dehydro-3-deoxyheptonate aldolase compare
RR42_RS03085 -2.2 -1.8 RecX family transcriptional regulator compare
RR42_RS16265 -2.1 -2.6 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
RR42_RS18420 -2.0 -8.6 hypothetical protein compare
RR42_RS20310 -2.0 -1.2 copper-binding protein compare
RR42_RS04180 -2.0 -1.3 methyltransferase compare
RR42_RS18730 -1.9 -2.5 hypothetical protein compare
RR42_RS12590 -1.9 -0.8 50S ribosomal protein L9 compare
RR42_RS04535 -1.9 -3.8 cysteine synthase compare
RR42_RS34395 -1.9 -1.9 hypothetical protein compare
RR42_RS19010 -1.8 -7.8 shikimate kinase compare
RR42_RS14365 -1.8 -4.3 N-(5'-phosphoribosyl)anthranilate isomerase compare
RR42_RS18310 -1.8 -1.7 indole-3-glycerol-phosphate synthase compare
RR42_RS14360 -1.8 -2.4 tryptophan synthase subunit alpha compare
RR42_RS16250 -1.7 -6.1 sulfate adenylyltransferase compare
RR42_RS16270 -1.7 -6.8 sulfite reductase compare
RR42_RS01260 -1.7 -5.7 lauroyl acyltransferase compare
RR42_RS08210 -1.7 -1.7 hypothetical protein compare
RR42_RS17645 -1.7 -7.2 shikimate dehydrogenase compare
RR42_RS01505 -1.6 -1.3 tRNA-Cys compare
RR42_RS02440 -1.6 -1.0 membrane protein compare
RR42_RS03375 -1.6 -5.4 glucose-6-phosphate dehydrogenase compare
RR42_RS07115 -1.6 -1.5 hypothetical protein compare
RR42_RS24010 -1.5 -2.5 hypothetical protein compare
RR42_RS16260 -1.5 -2.8 phosphoadenosine phosphosulfate reductase compare
RR42_RS14390 -1.5 -3.4 3-isopropylmalate dehydratase compare
RR42_RS04460 -1.5 -8.0 chorismate mutase compare
RR42_RS16245 -1.5 -4.2 uroporphyrin-III methyltransferase compare
RR42_RS22295 -1.5 -1.6 methionine sulfoxide reductase B compare
RR42_RS10855 -1.4 -1.1 diguanylate phosphodiesterase compare
RR42_RS26900 -1.4 -2.4 enoyl-CoA hydratase compare
RR42_RS12870 -1.4 -1.8 membrane protein compare
RR42_RS17355 -1.4 -0.9 hypothetical protein compare
RR42_RS37400 -1.4 -2.1 6-phosphogluconolactonase compare
RR42_RS08085 -1.4 -2.8 hypothetical protein compare
RR42_RS07360 -1.4 -2.0 ATPase compare
RR42_RS30735 -1.4 -1.5 tRNA-Met compare
RR42_RS31490 -1.3 -2.7 hypothetical protein compare
RR42_RS06120 -1.3 -3.5 transcriptional regulator compare
RR42_RS08945 -1.3 -1.2 hypothetical protein compare
RR42_RS06485 -1.3 -8.2 chorismate synthase compare
RR42_RS26555 -1.3 -1.5 tRNA-Met compare
RR42_RS04325 -1.3 -2.0 membrane protein compare
RR42_RS27080 -1.3 -2.5 hypothetical protein compare
RR42_RS04470 -1.3 -3.9 prephenate dehydrogenase compare
RR42_RS10415 -1.3 -1.4 hypothetical protein compare
RR42_RS16175 -1.3 -1.7 enoyl-CoA hydratase compare
RR42_RS35895 -1.3 -2.8 PadR family transcriptional regulator compare
RR42_RS28695 -1.3 -1.7 hypothetical protein compare
RR42_RS07380 -1.2 -1.7 dihydrolipoamide dehydrogenase compare
RR42_RS16275 -1.2 -1.4 membrane protein compare
RR42_RS04475 -1.2 -8.7 3-phosphoshikimate 1-carboxyvinyltransferase compare
RR42_RS01065 -1.2 -2.6 ATP-dependent protease ATP-binding subunit HslU compare
RR42_RS03465 -1.2 -2.8 biopolymer transporter ExbD compare
RR42_RS02210 -1.2 -1.1 succinate dehydrogenase compare
RR42_RS17590 -1.2 -1.3 16S rRNA methyltransferase compare
RR42_RS03715 -1.2 -2.8 inositol monophosphatase compare
RR42_RS18295 -1.2 -7.4 anthranilate synthase component I compare
RR42_RS08865 -1.2 -2.3 hydroxylase compare
RR42_RS11660 -1.1 -2.1 hypothetical protein compare
RR42_RS18300 -1.1 -2.8 anthranilate synthase subunit II compare
RR42_RS00360 -1.1 -1.7 Asp/Glu/hydantoin racemase compare
RR42_RS16535 -1.1 -1.7 hypothetical protein compare
RR42_RS13835 -1.1 -1.6 hypothetical protein compare
RR42_RS16255 -1.1 -3.2 sulfate adenylyltransferase compare
RR42_RS07565 -1.1 -2.2 transcription accessory protein compare
RR42_RS20825 -1.1 -2.4 addiction module antitoxin compare
RR42_RS15755 -1.1 -1.6 acetyltransferase compare
RR42_RS35250 -1.1 -1.6 alpha/beta hydrolase compare
RR42_RS22590 -1.1 -0.9 organic hydroperoxide resistance protein compare
RR42_RS20145 -1.1 -2.7 CoA-binding protein compare
RR42_RS31530 -1.0 -1.1 histidine kinase compare
RR42_RS14385 -1.0 -3.8 3-isopropylmalate dehydrogenase compare
RR42_RS03370 -1.0 -1.5 fructose ABC transporter, substrate-binding component (FrcB) (from data) compare
RR42_RS12305 -1.0 -1.0 hypothetical protein compare
RR42_RS29865 -1.0 -2.2 hypothetical protein compare
RR42_RS08805 -1.0 -1.8 nitrate reductase compare
RR42_RS00830 -1.0 -2.3 cell division protein FtsN compare
RR42_RS24820 -1.0 -1.7 hypothetical protein compare
RR42_RS05955 -1.0 -0.6 hypothetical protein compare
RR42_RS03670 -1.0 -1.6 isochorismatase compare
RR42_RS18305 -1.0 -1.6 anthranilate phosphoribosyltransferase compare
RR42_RS26895 -1.0 -3.2 3-methylcrotonyl-CoA carboxylase compare
RR42_RS25785 -1.0 -1.4 TetR family transcriptional regulator compare
RR42_RS16460 -1.0 -1.6 cupin compare
RR42_RS12390 -1.0 -2.6 transporter compare
RR42_RS12185 -1.0 -1.3 LysR family transcriptional regulator compare
RR42_RS35020 -1.0 -1.7 rubredoxin compare
RR42_RS18805 -1.0 -2.6 peptidase compare
RR42_RS14590 -0.9 -2.6 hypothetical protein compare
RR42_RS16675 -0.9 -1.0 hypothetical protein compare
RR42_RS29335 -0.9 -1.2 integrase compare
RR42_RS26350 -0.9 -1.9 bleomycin resistance protein compare
RR42_RS02675 -0.9 -2.0 D-tyrosyl-tRNA(Tyr) deacylase compare
RR42_RS21040 -0.9 -0.9 hypothetical protein compare
RR42_RS26905 -0.9 -3.2 methylcrotonoyl-CoA carboxylase compare
RR42_RS24760 -0.9 -1.0 hypothetical protein compare
RR42_RS15810 -0.9 -1.8 UDP-N-acetylglucosamine 4,6-dehydratase compare
RR42_RS27695 -0.9 -1.7 polyketide cyclase compare
RR42_RS06125 -0.9 -1.6 phosphogluconate dehydratase compare
RR42_RS05030 -0.9 -1.3 hypothetical protein compare
RR42_RS18985 -0.9 -3.6 glutamate synthase compare
RR42_RS18700 -0.9 -1.0 membrane protein compare
RR42_RS34675 -0.9 -1.4 NADPH:quinone reductase compare
RR42_RS09580 -0.9 -1.0 hypothetical protein compare
RR42_RS20305 -0.9 -4.7 metal ABC transporter ATPase compare
RR42_RS26590 -0.9 -1.0 hypothetical protein compare
RR42_RS16740 -0.9 -1.3 hypothetical protein compare
RR42_RS36890 -0.9 -2.0 hypothetical protein compare
RR42_RS27725 -0.9 -1.9 GntR family transcriptional regulator compare
RR42_RS22940 -0.9 -1.2 TetR family transcriptional regulator compare
RR42_RS23205 -0.8 -0.8 hypothetical protein compare
RR42_RS15245 -0.8 -1.2 alpha/beta hydrolase compare
RR42_RS05125 -0.8 -1.5 malonic semialdehyde reductase compare
RR42_RS26265 -0.8 -1.0 hypothetical protein compare
RR42_RS33505 -0.8 -2.8 AsnC family transcriptional regulator compare
RR42_RS17375 -0.8 -0.9 hypothetical protein compare
RR42_RS04955 -0.8 -1.7 hypothetical protein compare
RR42_RS03080 -0.8 -1.1 recombinase RecA compare
RR42_RS03170 -0.8 -1.4 hypothetical protein compare
RR42_RS07150 -0.8 -0.9 hypothetical protein compare
RR42_RS30450 -0.8 -2.5 cation:proton antiporter compare
RR42_RS17720 -0.8 -0.9 sugar kinase compare
RR42_RS26220 -0.8 -1.4 citrate lyase subunit beta compare
RR42_RS03980 -0.8 -1.6 Fis family transcriptional regulator compare
RR42_RS17665 -0.8 -1.6 chorismate lyase compare
RR42_RS14055 -0.8 -1.4 elongation factor 4 compare
RR42_RS27375 -0.8 -2.3 NAD(P)H-quinone oxidoreductase compare
RR42_RS08185 -0.8 -1.6 hypothetical protein compare
RR42_RS20205 -0.8 -0.5 chromosome partitioning protein compare
RR42_RS33350 -0.8 -1.4 hypothetical protein compare
RR42_RS01435 -0.8 -1.6 short-chain dehydrogenase compare
RR42_RS30905 -0.8 -2.4 aminotransferase DegT compare
RR42_RS08175 -0.8 -0.8 hypothetical protein compare
RR42_RS14400 -0.8 -2.6 isopropylmalate isomerase compare
RR42_RS03685 -0.8 -1.7 GTP cyclohydrolase compare
RR42_RS25640 -0.8 -1.1 3-hydroxyisobutyrate dehydrogenase compare
RR42_RS29005 -0.8 -2.6 membrane protein compare
RR42_RS15050 -0.8 -3.3 DNA polymerase I compare
RR42_RS21075 -0.8 -0.7 phosphoribosyltransferase compare
RR42_RS33040 -0.8 -1.4 hypothetical protein compare
RR42_RS27320 -0.7 -1.3 ferredoxin compare
RR42_RS14810 -0.7 -2.6 DEAD/DEAH box helicase compare
RR42_RS31790 -0.7 -1.2 nitrite reductase compare
RR42_RS07995 -0.7 -1.1 hypothetical protein compare
RR42_RS26740 -0.7 -1.1 protein serine/threonine phosphatase compare
RR42_RS10410 -0.7 -2.7 hypothetical protein compare
RR42_RS01500 -0.7 -1.5 hypothetical protein compare
RR42_RS16910 -0.7 -1.0 histidine utilization protein HutD compare
RR42_RS12240 -0.7 -0.7 hypothetical protein compare
RR42_RS07255 -0.7 -1.6 hypothetical protein compare
RR42_RS24030 -0.7 -2.4 3-hydroxyisobutyrate dehydrogenase compare
RR42_RS34520 -0.7 -0.8 transposase compare
RR42_RS16280 -0.7 -3.3 transcriptional regulator compare
RR42_RS31290 -0.7 -0.9 XRE family transcriptional regulator compare
RR42_RS12250 -0.7 -1.5 sulfate ABC transporter ATP-binding protein compare
RR42_RS27625 -0.7 -1.5 TetR family transcriptional regulator compare
RR42_RS06020 -0.7 -0.4 Fe-S cluster assembly transcriptional regulator IscR compare
RR42_RS31080 -0.7 -1.0 hypothetical protein compare
RR42_RS04015 -0.7 -0.7 RNA polymerase sigma factor compare
RR42_RS09290 -0.7 -0.9 hypothetical protein compare
RR42_RS01330 -0.7 -1.8 Fis family transcriptional regulator compare
RR42_RS34115 -0.7 -1.2 hypothetical protein compare
RR42_RS12860 -0.7 -1.0 pseudouridine synthase compare
RR42_RS11085 -0.7 -2.6 acetyl-CoA acetyltransferase compare
RR42_RS01315 -0.7 -1.7 GNAT family acetyltransferase compare
RR42_RS04350 -0.7 -2.1 ABC transporter ATP-binding protein compare
RR42_RS05240 -0.7 -1.5 LysR family transcriptional regulator compare
RR42_RS08355 -0.7 -2.3 hypothetical protein compare
RR42_RS12050 -0.7 -1.2 DNA polymerase compare
RR42_RS07785 -0.7 -1.6 hypothetical protein compare
RR42_RS37045 -0.7 -1.1 thiamine biosynthesis protein ApbE compare
RR42_RS10585 -0.7 -2.3 TetR family transcriptional regulator compare
RR42_RS36935 -0.7 -2.4 hypothetical protein compare
RR42_RS01845 -0.7 -1.2 glycerol-3-phosphate dehydrogenase compare
RR42_RS06355 -0.7 -1.5 Fe-S cluster assembly protein HesB compare
RR42_RS31910 -0.7 -0.7 acyl-CoA dehydrogenase compare
RR42_RS27570 -0.7 -1.1 murein hydrolase effector protein compare
RR42_RS14235 -0.7 -0.9 hypothetical protein compare
RR42_RS28290 -0.7 -0.9 DNA-binding protein compare
RR42_RS31245 -0.7 -1.1 membrane protein compare
RR42_RS16305 -0.6 -1.2 hypothetical protein compare
RR42_RS28850 -0.6 -1.7 transcriptional regulator compare
RR42_RS08495 -0.6 -2.2 transcriptional regulator compare
RR42_RS14750 -0.6 -3.4 peptidase PMbA compare
RR42_RS05930 -0.6 -1.4 RNA-binding protein S4 compare
RR42_RS33900 -0.6 -1.9 membrane protein compare
RR42_RS22185 -0.6 -1.5 LysR family transcriptional regulator compare
RR42_RS32650 -0.6 -2.1 betaine-aldehyde dehydrogenase compare
RR42_RS03005 -0.6 -1.3 3-hydroxy-2-methylbutyryl-CoA dehydrogenase compare
RR42_RS28460 -0.6 -2.7 permease compare
RR42_RS28860 -0.6 -3.0 2-dehydro-3-deoxygluconokinase (EC 2.7.1.45) (from data) compare
RR42_RS00625 -0.6 -0.9 hypothetical protein compare


Specific Phenotypes

For 1 genes in this experiment

For oxygen_nitrate Sodium nitrate in Cupriavidus basilensis FW507-4G11

For oxygen_nitrate Sodium nitrate across organisms