Experiment set9IT032 for Desulfovibrio vulgaris Hildenborough JW710

Compare to:

MoLS4 with L-Cysteine as nutrient 10mM

200 most detrimental genes:

  gene name fitness t score description  
DVU3223 aspB +13.1 56.0 aspartate aminotransferase (TIGR) compare
DVU2206 +8.5 15.5 conserved hypothetical protein (TIGR) compare
DVU0280 wbaZ-2 +4.5 3.1 glycosyl transferase, group 1 family protein (TIGR) compare
DVU0281 +4.3 3.0 exopolysaccharide biosynthesis protein, putative (TIGR) compare
DVUA0071 +4.3 2.9 glycosyl transferase, group 1/2 family protein (TIGR) compare
DVU0448 gmd +4.1 2.8 GDP-mannose 4,6-dehydratase (TIGR) compare
DVUA0081 +4.0 3.9 glycosyl transferase, group 1/2 family protein (TIGR) compare
DVU1841 fbp +3.8 3.6 fructose-1,6-bisphosphatase (TIGR) compare
DVU2287 +3.5 3.8 hydrogenase, CooK subunit, selenocysteine-containing, putative (TIGR) compare
DVU2297 +3.4 12.2 glycine/betaine/L-proline ABC transporter, periplasmic-binding protein (TIGR) compare
DVU0251 +3.4 15.6 membrane protein, putative (TIGR) compare
DVUA0080 +3.4 2.3 glycosyl transferase, group 2 family protein (TIGR) compare
DVU0250 +3.3 15.9 hypothetical protein (TIGR) compare
DVU1061 +3.2 3.0 glycosyl transferase, group 1 family protein (TIGR) compare
DVU3067 hypF +3.1 2.2 [NiFe] hydrogenase maturation protein HypF (TIGR) compare
DVU0509 +3.1 2.3 conserved hypothetical protein (TIGR) compare
DVU0247 ntrX +3.0 8.4 response regulator (TIGR) compare
DVU2298 opuBB +3.0 10.8 glycine/betaine/L-proline ABC transporter, permease protein (TIGR) compare
DVU1455 +2.8 3.8 conserved hypothetical protein (TIGR) compare
DVU3314 +2.8 2.7 peptidase, U32 family (TIGR) compare
DVU1186 mazG +2.8 1.9 phosphoribosyl-ATP diphosphatase (EC 3.6.1.31) (from data) compare
DVU0488 purD +2.8 3.2 phosphoribosylamine--glycine ligase (TIGR) compare
DVU3133 glpF +2.7 4.7 glycerol uptake facilitator protein (TIGR) compare
DVU3032 +2.7 10.5 conserved hypothetical protein (TIGR) compare
DVU0796 hisD +2.7 2.6 histidinol dehydrogenase (TIGR) compare
DVU2116 +2.6 2.6 pilin, putative (TIGR) compare
DVU1653 +2.5 3.0 polyA polymerase family protein (TIGR) compare
DVU1158 +2.5 3.3 hypothetical protein (TIGR) compare
DVU2299 proV +2.5 11.3 glycine/betaine/L-proline ABC transporter, ATP binding protein (TIGR) compare
DVU1600 +2.5 12.5 adenylate cyclase (TIGR) compare
DVU1038 hisA +2.5 1.7 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (TIGR) compare
DVU2650 +2.5 2.4 hypothetical protein (TIGR) compare
DVU3027 glcD +2.5 6.5 glycolate oxidase, subunit GlcD (TIGR) compare
DVU1029 hisC +2.5 2.3 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
DVU2956 flrA +2.4 2.6 sigma-54 dependent transcriptional regulator (TIGR) compare
DVU3350 oorD +2.4 2.3 iron-sulfur cluster-binding protein (TIGR) compare
DVU2957 +2.4 1.9 hypothetical protein (TIGR) compare
DVU2062 +2.4 4.3 ATP-dependent DNA helicase, UvrD/REP family (TIGR) compare
DVU0245 +2.4 11.3 protein phosphatase, putative (TIGR) compare
DVU3033 +2.4 16.1 iron-sulfur cluster-binding protein (TIGR) compare
DVU0712 +2.3 13.0 amino acid ABC transporter, periplasmic-binding protein (TIGR) compare
DORF807 +2.3 3.4 no description compare
DVU1630 ptsN +2.2 2.0 PTS system, IIA component (TIGR) compare
DVU0703 lepA +2.2 1.5 GTP-binding protein LepA (TIGR) compare
DVU1743 +2.2 1.5 hypothetical protein (TIGR) compare
DVU0669 +2.2 2.9 hypothetical protein (TIGR) compare
DVU1377 ilvN-2 +2.2 1.3 acetolactate synthase, small subunit (TIGR) compare
DVU2300 +2.2 2.8 hypothetical protein (TIGR) compare
DVU3273 +2.1 2.2 conserved hypothetical protein (TIGR) compare
DVU0715 livG +2.1 12.1 branched-chain amino acid ABC transporter, ATP binding protein (TIGR) compare
DVU2063 +2.1 3.6 conserved hypothetical protein (TIGR) compare
DVU1828 gidA +2.1 3.2 glucose inhibited division protein A (TIGR) compare
DVU2306 +2.1 2.8 phosphate transporter family protein (TIGR) compare
DVU1092 +2.1 16.0 sodium-dependent symporter family protein (TIGR) compare
DVU0533 hmcD +2.1 1.4 HmcD, 5.8 kd protein in hmc operon (voordouw) compare
DVU0967 +2.0 12.9 amino acid ABC transporter, permease protein, His/Glu/Gln/Arg/opine family (TIGR) compare
DVU0451 +2.0 13.6 chloride channel family protein (TIGR) compare
DVU1933 +2.0 1.5 peptidase, PfpI family (TIGR) compare
DVU0714 livM +2.0 9.7 branched-chain amino acid ABC transporter, permease protein (TIGR) compare
DVU0681 +2.0 3.0 sensor histidine kinase/response regulator (TIGR) compare
DVU1079 trmE +2.0 1.9 tRNA modification GTPase TrmE (TIGR) compare
DVU3392 glnA +2.0 13.9 glutamine synthetase, type I (TIGR) compare
DVU1585 +1.9 5.4 Methionine synthase (cobalamin-dependent) (EC 2.1.1.13) (from data) compare
DVU3028 +1.9 8.8 iron-sulfur cluster-binding protein (TIGR) compare
DVU2083 relA +1.9 4.3 GTP pyrophosphokinase (TIGR) compare
DVU2550 +1.9 1.8 hypothetical protein (TIGR) compare
DVU1748 +1.9 1.4 conserved hypothetical protein (TIGR) compare
DVU0899 +1.8 1.7 conserved hypothetical protein (TIGR) compare
DVU1634 +1.8 2.1 membrane protein, putative (TIGR) compare
DVU3031 +1.8 2.8 conserved hypothetical protein (TIGR) compare
DVU0716 livF +1.8 6.3 branched-chain amino acid ABC transporter, ATP-binding protein (TIGR) compare
DVU2286 +1.8 4.2 hydrogenase, CooM subunit, putative (TIGR) compare
DVU3026 +1.8 7.2 L-lactate permease family protein (TIGR) compare
DVU0063 +1.8 2.7 transcriptional regulator, MarR family (TIGR) compare
DVU1349 SelGGPS +1.8 1.7 geranylgeranyl diphosphate synthase (TIGR) compare
DVU0713 livH +1.8 8.1 branched-chain amino acid ABC transporter, permease protein (TIGR) compare
DVU0671 +1.8 11.8 conserved hypothetical protein (TIGR) compare
DVU0683 +1.8 5.9 hflC protein, putative (TIGR) compare
DVU0966 +1.7 9.0 amino acid ABC transporter, periplasmic amino acid-binding protein (TIGR) compare
DVU1040 hisB +1.7 1.2 imidazoleglycerol-phosphate dehydratase (TIGR) compare
DVU1429 +1.7 1.2 GTP-binding protein (TIGR) compare
DVU0963 +1.7 3.0 GTP cyclohydrolase I family protein (TIGR) compare
DVU2510 +1.7 1.1 penicillin-binding protein (TIGR) compare
DVU2567 lysX +1.7 2.7 predicted transcriptional regulator for lysine biosynthesis and transport (Dmitry Rodionov) compare
DVU0219 +1.7 2.9 tail protein, putative (TIGR) compare
DVU1337 lon +1.7 9.2 ATP-dependent protease La (TIGR) compare
DVU0968 +1.6 9.3 amino acid ABC transporter, ATP-binding protein (TIGR) compare
DVU0690 +1.6 6.2 conserved hypothetical protein (TIGR) compare
DVU0684 hflK +1.6 8.3 hflK protein, putative (TIGR) compare
DVU0951 moeA-2 +1.6 4.8 molybdopterin biosynthesis MoeA protein, putative (TIGR) compare
DVU0920 atpI +1.6 1.1 ATP synthase protein I (TIGR) compare
DVU0815 +1.6 5.7 AsmA family protein (TIGR) compare
DVU0365 +1.6 7.5 conserved hypothetical protein (TIGR) compare
DVU2150 dksA +1.6 1.7 dnaK suppressor protein, putative (TIGR) compare
DVU0257 +1.6 2.3 acetyltransferase, GNAT family (TIGR) compare
DVU1335 clpP +1.6 5.5 ATP-dependent Clp protease, proteolytic subunit (TIGR) compare
DVU1682 +1.6 1.5 GAF domain protein (TIGR) compare
DVU0471 trpA +1.6 4.6 tryptophan synthase, alpha subunit (TIGR) compare
DVU0470 trpB-2 +1.6 3.6 tryptophan synthase, beta subunit (TIGR) compare
DVU3348 +1.5 1.3 pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit, putative (TIGR) compare
DVU2850 +1.5 1.2 tail protein, putative (TIGR) compare
DVU0286 hisF +1.5 2.0 imidazoleglycerol phosphate synthase, cyclase subunit (TIGR) compare
DVU1242 vacJhomolog +1.5 1.6 vacJ lipoprotein, putative (TIGR) compare
DVU2454 +1.5 0.9 hypothetical protein (TIGR) compare
DVU3364 +1.4 2.2 conserved hypothetical protein (TIGR) compare
DVU3299 +1.4 2.4 membrane protein, putative (TIGR) compare
DVU2289 b2488 +1.4 0.6 hydrogenase, CooX subunit, putative (TIGR) compare
DVU0067 +1.4 3.1 hypothetical protein (TIGR) compare
DVU0455 +1.4 3.1 hypothetical protein (TIGR) compare
DVU2577 +1.4 3.9 DNA-binding response regulator, LuxR family (TIGR) compare
DVU0965 +1.4 0.8 hypothetical protein (TIGR) compare
DVU0001 dnaA-1 +1.4 2.8 chromosomal replication initiator protein DnaA (TIGR) compare
DVU1245 +1.4 1.9 ABC transporter, ATP-binding protein (TIGR) compare
DVU0598 +1.4 1.7 carbon starvation protein A, putative (TIGR) compare
DVU2863 +1.4 1.4 hypothetical protein (TIGR) compare
DVU0413 trk1 +1.4 2.9 potassium uptake protein, TrkH family (TIGR) compare
DVU1796 +1.3 1.6 hypothetical protein (TIGR) compare
DVU1280 +1.3 3.9 conserved hypothetical protein TIGR00159 (TIGR) compare
DVU3063 mviN-2 +1.3 4.4 integral membrane protein MviN (TIGR) compare
DVU2255 ruvB +1.3 1.8 Holliday junction DNA helicase RuvB (TIGR) compare
DVUA0089 +1.3 1.0 hypothetical protein (TIGR) compare
DVU1225 +1.3 0.9 hypothetical protein (TIGR) compare
DVU1082 +1.3 5.6 3- 5 exonuclease domain protein (TIGR) compare
DVU1434 +1.3 0.8 hypothetical protein (TIGR) compare
DVU2578 +1.3 7.2 response regulator (TIGR) compare
DVU1791 +1.3 1.1 GatB/Yqey family protein (TIGR) compare
DVU1666 efp +1.3 2.4 translation elongation factor P (TIGR) compare
DVU0550 livG +1.3 6.3 high-affinity branched-chain amino acid ABC transporter, ATP binding protein (TIGR) compare
DVU2236 +1.3 0.7 hypothetical protein (TIGR) compare
DVU_tRNA-Thr-1 tRNA-Thr +1.3 0.7 tRNA with anticodon GGT for Thr (VIMSS-AUTO) compare
DVU0551 livF +1.3 4.7 high-affinity branched-chain amino acid ABC transporter ATP-binding protein (TIGR) compare
DVU1409 +1.2 3.0 hypothetical protein (TIGR) compare
DVU0412 +1.2 2.0 potassium uptake protein TrkA, putative (TIGR) compare
DVU0689 rnhA +1.2 1.8 ribonuclease HI (TIGR) compare
DVU1360 galE +1.2 0.8 UDP-glucose 4-epimerase (TIGR) compare
DVU1336 clpX +1.2 6.2 ATP-dependent Clp protease, ATP-binding subunit ClpX (TIGR) compare
DVU0114 hisG +1.2 1.2 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
DVU1679 idi +1.2 1.0 isopentenyl-diphosphate delta-isomerase (TIGR) compare
DVU0308 +1.2 1.4 membrane protein, putative (TIGR) compare
DVU2479 pstA-2 +1.2 7.2 phosphate ABC transporter, permease protein, putative (TIGR) compare
DVU0987 +1.2 1.0 heavy metal-binding domain protein (TIGR) compare
DVU0420 +1.2 1.1 hypothetical protein (TIGR) compare
DVU0547 +1.2 7.0 high-affinity branched chain amino acid ABC transporter, periplasmic branched chain amino acid-binding protein (TIGR) compare
DVU3134 glpK +1.2 3.6 glycerol kinase (TIGR) compare
DVU1090 recA +1.2 1.5 recA protein (TIGR) compare
DVU1654 xerD +1.2 2.5 site-specific recombinase, phage integrase family (TIGR) compare
DVU1491 +1.2 1.3 conserved hypothetical protein (TIGR) compare
DVU2659 +1.2 2.0 exsB protein (TIGR) compare
DVU0892 aroK-1 +1.2 0.7 shikimate kinase (TIGR) compare
DVU0787 +1.2 1.9 hypothetical protein (TIGR) compare
DVU2328 hypA +1.2 1.6 hydrogenase nickel insertion protein HypA, putative (TIGR) compare
DVU3281 +1.1 2.4 hypothetical protein (TIGR) compare
DVU0549 +1.1 5.5 proline/arginine ABC transporter, permease component (from data) compare
DVU2085 +1.1 2.4 Snf2 family protein (TIGR) compare
DVU0530 rrf1 +1.1 0.8 Rrf1 protein (voordouw) compare
DVU0692 +1.1 1.7 molybdopterin oxidoreductase, transmembrane subunit, putative (TIGR) compare
DVU2729 +1.1 0.6 tail protein, putative (TIGR) compare
DVU2291 +1.1 1.1 carbon monoxide-induced hydrogenase CooH, putative (TIGR) compare
DORF12465 +1.1 2.9 SEED: HigB toxin protein compare
DVU2704 +1.1 2.4 conserved hypothetical protein (TIGR) compare
DVU1842 +1.1 1.6 lipoprotein, putative (TIGR) compare
DORF35977 +1.1 7.7 no description compare
DVU0590 +1.1 2.6 hypothetical protein (TIGR) compare
DVU2057 +1.1 3.0 conserved hypothetical protein (TIGR) compare
DVU2055 metG +1.1 1.0 methionyl-tRNA synthetase (TIGR) compare
DVU1521 +1.1 0.6 hypothetical protein (TIGR) compare
DVU1762 +1.1 2.0 membrane protein, putative (TIGR) compare
DVU1510 +1.0 1.0 hypothetical protein (TIGR) compare
DORF18707 +1.0 0.7 no description compare
DVU1084 pstB-1 +1.0 4.2 phosphate ABC transporter, ATP-binding protein (TIGR) compare
DVU1893 +1.0 2.6 ATP-dependent protease, putative (TIGR) compare
DVU0285 hisH +1.0 1.9 IGP synthase, amidotransferase subunit (EC 4.3.2.10) (from data) compare
DVU3228 cheY-3 +1.0 1.4 chemotaxis protein CheY (TIGR) compare
DVU0378 +1.0 1.9 thioredoxin, putative (TIGR) compare
DVU1611 +1.0 2.6 molybdopterin oxidoreductase domain protein (TIGR) compare
DVU0440 +1.0 6.0 conserved hypothetical protein (TIGR) compare
DVU0579 +1.0 2.7 molybdopterin-guanine dinucleotide biosynthesis protein A, putative (TIGR) compare
DVU0843 +1.0 2.4 hypothetical protein (TIGR) compare
DVU0914 cobS +1.0 1.5 cobalamin-5-phosphate synthase (TIGR) compare
DVU3024 +1.0 0.6 hypothetical protein (TIGR) compare
DVU1571 rho +1.0 0.8 transcription termination factor Rho (TIGR) compare
DVUA0111 +1.0 1.6 type III secretion system protein, IpaC family, putative (TIGR) compare
DVU2990 moeA +1.0 6.8 molybdopterin biosynthesis MoeA protein (TIGR) compare
DVU3309 +1.0 1.7 endo/excinuclease amino terminal domain protein (TIGR) compare
DVU1247 +1.0 3.3 hypothetical protein (TIGR) compare
DVU2566 lysA-2 +1.0 1.7 diaminopimelate decarboxylase (TIGR) compare
DVU3243 dnaJ +0.9 1.4 dnaJ protein (TIGR) compare
DVU1070 rbsA +0.9 3.5 branched chain amino acid ABC transporter, ATP-binding protein (TIGR) compare
DVU3175 +0.9 1.2 membrane protein, putative (TIGR) compare
DVU0555 +0.9 0.6 hypothetical protein (TIGR) compare
DVU0035 +0.9 2.1 hypothetical protein (TIGR) compare
DVU1058 nikM +0.9 0.9 component of nickel ABC transport system (Dmitry Rodionov) compare
DVU1631 +0.9 2.6 conserved hypothetical protein (TIGR) compare
DVU2680 fld +0.9 2.4 flavodoxin, iron-repressed (Dmitry Rodionov) compare
DVU2307 +0.9 2.6 C4-type zinc finger protein, DksA/TraR family (TIGR) compare
DVU2807 +0.9 1.2 biopolymer transport protein, ExbD/TolR family (TIGR) compare
DVU2763 +0.9 4.7 TPR/GGDEF domain protein (TIGR) compare
DVU3357 +0.9 2.5 hypothetical protein (TIGR) compare
DVU2798 +0.9 2.2 ApbE family protein (TIGR) compare
DVU2553 nifU-3 +0.9 1.6 NifU family protein (TIGR) compare


Specific Phenotypes

For 23 genes in this experiment

For nutrient L-Cysteine in Desulfovibrio vulgaris Hildenborough JW710

For nutrient L-Cysteine across organisms