Experiment set9IT032 for Cupriavidus basilensis FW507-4G11

Compare to:

Defined media with exometabolites; 10% oxygen; 5 mM nitrate

200 most important genes:

  gene name fitness t score description  
RR42_RS17720 -3.3 -2.2 sugar kinase compare
RR42_RS17355 -3.1 -1.4 hypothetical protein compare
RR42_RS03670 -2.9 -2.5 isochorismatase compare
RR42_RS23305 -2.9 -1.9 hypothetical protein compare
RR42_RS02705 -2.8 -1.3 Holliday junction DNA helicase RuvA compare
RR42_RS18385 -2.5 -2.1 hypothetical protein compare
RR42_RS07555 -2.4 -1.6 potassium transporter Kup compare
RR42_RS26900 -2.3 -3.1 enoyl-CoA hydratase compare
RR42_RS16240 -2.2 -1.4 cobalamin biosynthesis protein CbiX compare
RR42_RS15640 -2.2 -1.8 hypothetical protein compare
RR42_RS18420 -2.2 -7.6 hypothetical protein compare
RR42_RS01845 -2.2 -3.0 glycerol-3-phosphate dehydrogenase compare
RR42_RS12590 -2.0 -0.9 50S ribosomal protein L9 compare
RR42_RS04325 -2.0 -2.9 membrane protein compare
RR42_RS20370 -2.0 -2.3 pterin-4-alpha-carbinolamine dehydratase compare
RR42_RS19005 -2.0 -9.7 3-dehydroquinate synthase compare
RR42_RS16260 -1.9 -3.3 phosphoadenosine phosphosulfate reductase compare
RR42_RS12040 -1.9 -9.4 MFS transporter compare
RR42_RS33815 -1.8 -1.2 isochorismatase compare
RR42_RS12875 -1.7 -1.8 transcriptional regulator compare
RR42_RS18840 -1.6 -1.9 2-alkenal reductase compare
RR42_RS36920 -1.6 -2.1 TetR family transcriptional regulator compare
RR42_RS06860 -1.6 -2.0 hypothetical protein compare
RR42_RS03365 -1.6 -1.5 fructose ABC transporter, permease component (FrcC) (from data) compare
RR42_RS02440 -1.6 -1.0 membrane protein compare
RR42_RS17645 -1.6 -5.7 shikimate dehydrogenase compare
RR42_RS06125 -1.6 -3.7 phosphogluconate dehydratase compare
RR42_RS20195 -1.6 -0.7 ATPase F0F1 compare
RR42_RS14360 -1.6 -2.2 tryptophan synthase subunit alpha compare
RR42_RS15090 -1.5 -2.4 DNA helicase compare
RR42_RS09580 -1.5 -1.5 hypothetical protein compare
RR42_RS01785 -1.5 -2.1 PTS fructose transporter subunit IIA compare
RR42_RS03370 -1.4 -1.7 fructose ABC transporter, substrate-binding component (FrcB) (from data) compare
RR42_RS06240 -1.4 -1.0 tryptophan--tRNA ligase compare
RR42_RS05860 -1.4 -6.2 phospho-2-dehydro-3-deoxyheptonate aldolase compare
RR42_RS21435 -1.4 -0.9 hypothetical protein compare
RR42_RS14365 -1.4 -1.9 N-(5'-phosphoribosyl)anthranilate isomerase compare
RR42_RS11770 -1.4 -1.4 cyclase compare
RR42_RS34520 -1.4 -1.3 transposase compare
RR42_RS15015 -1.4 -1.1 exodeoxyribonuclease VII small subunit compare
RR42_RS04460 -1.4 -8.7 chorismate mutase compare
RR42_RS08350 -1.4 -1.8 hypothetical protein compare
RR42_RS18300 -1.4 -3.8 anthranilate synthase subunit II compare
RR42_RS08180 -1.3 -1.4 hypothetical protein compare
RR42_RS19635 -1.3 -2.0 hypothetical protein compare
RR42_RS16270 -1.3 -6.7 sulfite reductase compare
RR42_RS04475 -1.3 -9.9 3-phosphoshikimate 1-carboxyvinyltransferase compare
RR42_RS16250 -1.3 -5.9 sulfate adenylyltransferase compare
RR42_RS26905 -1.3 -4.7 methylcrotonoyl-CoA carboxylase compare
RR42_RS06485 -1.3 -9.0 chorismate synthase compare
RR42_RS03375 -1.3 -3.9 glucose-6-phosphate dehydrogenase compare
RR42_RS07565 -1.2 -2.1 transcription accessory protein compare
RR42_RS06355 -1.2 -2.5 Fe-S cluster assembly protein HesB compare
RR42_RS02775 -1.2 -0.8 molecular chaperone SurA compare
RR42_RS01755 -1.2 -2.1 nitrogen regulatory protein P-II 1 compare
RR42_RS15245 -1.2 -2.6 alpha/beta hydrolase compare
RR42_RS35600 -1.2 -3.4 hypothetical protein compare
RR42_RS19010 -1.2 -5.4 shikimate kinase compare
RR42_RS16245 -1.1 -3.6 uroporphyrin-III methyltransferase compare
RR42_RS24690 -1.1 -1.2 hypothetical protein compare
RR42_RS24520 -1.1 -1.7 hypothetical protein compare
RR42_RS06120 -1.1 -3.4 transcriptional regulator compare
RR42_RS24490 -1.1 -1.8 hypothetical protein compare
RR42_RS37400 -1.1 -1.9 6-phosphogluconolactonase compare
RR42_RS05610 -1.1 -2.4 dehydratase compare
RR42_RS33595 -1.1 -2.4 hypothetical protein compare
RR42_RS31530 -1.1 -1.2 histidine kinase compare
RR42_RS16265 -1.1 -3.4 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
RR42_RS01260 -1.1 -2.5 lauroyl acyltransferase compare
RR42_RS18305 -1.1 -3.4 anthranilate phosphoribosyltransferase compare
RR42_RS17665 -1.1 -1.5 chorismate lyase compare
RR42_RS28000 -1.0 -1.8 hypothetical protein compare
RR42_RS04735 -1.0 -0.8 hypothetical protein compare
RR42_RS11415 -1.0 -1.9 hypothetical protein compare
RR42_RS03385 -1.0 -2.1 sugar kinase compare
RR42_RS05665 -1.0 -1.1 urease accessory protein UreJ compare
RR42_RS16255 -1.0 -4.2 sulfate adenylyltransferase compare
RR42_RS00510 -1.0 -2.7 transcriptional regulator compare
RR42_RS08210 -1.0 -1.3 hypothetical protein compare
RR42_RS18295 -1.0 -6.9 anthranilate synthase component I compare
RR42_RS12580 -1.0 -2.5 phosphate transport regulator compare
RR42_RS18425 -1.0 -1.1 hypothetical protein compare
RR42_RS07385 -1.0 -1.0 Phasin (PHA-granule associated protein) compare
RR42_RS05930 -1.0 -1.9 RNA-binding protein S4 compare
RR42_RS16175 -1.0 -1.5 enoyl-CoA hydratase compare
RR42_RS03465 -1.0 -2.5 biopolymer transporter ExbD compare
RR42_RS04535 -1.0 -2.7 cysteine synthase compare
RR42_RS21040 -1.0 -1.0 hypothetical protein compare
RR42_RS20810 -0.9 -1.6 hypothetical protein compare
RR42_RS26895 -0.9 -3.8 3-methylcrotonyl-CoA carboxylase compare
RR42_RS11985 -0.9 -2.2 glutathione ABC transporter permease compare
RR42_RS12375 -0.9 -3.3 LysR family transcriptional regulator compare
RR42_RS20570 -0.9 -1.4 biopolymer transporter ExbD compare
RR42_RS23335 -0.9 -2.8 hypothetical protein compare
RR42_RS20775 -0.9 -0.7 hypothetical protein compare
RR42_RS13595 -0.9 -1.9 hypothetical protein compare
RR42_RS32670 -0.9 -1.4 phenol hydroxylase compare
RR42_RS27915 -0.9 -1.4 acyl-CoA synthetase compare
RR42_RS21150 -0.9 -1.4 hypothetical protein compare
RR42_RS36815 -0.9 -2.4 ferredoxin compare
RR42_RS17320 -0.9 -1.4 murein hydrolase transporter LrgA compare
RR42_RS05255 -0.9 -3.9 allantoinase compare
RR42_RS00360 -0.9 -1.2 Asp/Glu/hydantoin racemase compare
RR42_RS07860 -0.9 -1.4 acetyltransferase compare
RR42_RS18605 -0.9 -2.0 sugar ABC transporter permease compare
RR42_RS22275 -0.9 -1.1 hypothetical protein compare
RR42_RS15050 -0.9 -3.7 DNA polymerase I compare
RR42_RS12305 -0.8 -0.9 hypothetical protein compare
RR42_RS13380 -0.8 -2.4 microcin ABC transporter permease compare
RR42_RS14755 -0.8 -1.6 hypothetical protein compare
RR42_RS31285 -0.8 -1.2 XRE family transcriptional regulator compare
RR42_RS08110 -0.8 -1.4 hypothetical protein compare
RR42_RS13065 -0.8 -3.5 ribonuclease R compare
RR42_RS35250 -0.8 -1.7 alpha/beta hydrolase compare
RR42_RS15740 -0.8 -0.9 hypothetical protein compare
RR42_RS00830 -0.8 -1.8 cell division protein FtsN compare
RR42_RS14385 -0.8 -3.3 3-isopropylmalate dehydrogenase compare
RR42_RS18670 -0.8 -1.9 metal-dependent hydrolase compare
RR42_RS24355 -0.8 -3.0 hypothetical protein compare
RR42_RS03380 -0.8 -2.1 glucose-6-phosphate isomerase compare
RR42_RS15290 -0.8 -1.9 cupin compare
RR42_RS08490 -0.8 -2.4 phage Rha protein compare
RR42_RS06635 -0.8 -0.5 MerR family transcriptional regulator compare
RR42_RS18985 -0.8 -3.7 glutamate synthase compare
RR42_RS09835 -0.8 -1.8 chemotaxis protein compare
RR42_RS29335 -0.8 -1.3 integrase compare
RR42_RS20305 -0.8 -4.4 metal ABC transporter ATPase compare
RR42_RS30310 -0.8 -1.2 signal transduction protein compare
RR42_RS20205 -0.8 -0.5 chromosome partitioning protein compare
RR42_RS36335 -0.8 -1.2 enoyl-CoA hydratase compare
RR42_RS03360 -0.8 -1.8 fructose ABC transporter, ATPase component (FrcA) (from data) compare
RR42_RS22645 -0.8 -1.6 GntR family transcriptional regulator compare
RR42_RS29825 -0.8 -2.4 hypothetical protein compare
RR42_RS18850 -0.8 -0.5 preprotein translocase subunit TatC compare
RR42_RS14845 -0.7 -1.4 MarR family transcriptional regulator compare
RR42_RS05620 -0.7 -1.3 esterase compare
RR42_RS15795 -0.7 -2.0 spore coat protein compare
RR42_RS19765 -0.7 -1.3 arsenate reductase compare
RR42_RS25590 -0.7 -2.2 glucose 1-dehydrogenase compare
RR42_RS32505 -0.7 -0.7 sulfonate ABC transporter ATP-binding protein compare
RR42_RS10280 -0.7 -2.2 hypothetical protein compare
RR42_RS37045 -0.7 -0.9 thiamine biosynthesis protein ApbE compare
RR42_RS06430 -0.7 -1.1 hypothetical protein compare
RR42_RS03715 -0.7 -2.3 inositol monophosphatase compare
RR42_RS22570 -0.7 -1.5 SAM-dependent methyltransferase compare
RR42_RS07605 -0.7 -1.4 poly-beta-hydroxybutyrate polymerase compare
RR42_RS10465 -0.7 -1.1 hypothetical protein compare
RR42_RS21790 -0.7 -1.0 short-chain dehydrogenase compare
RR42_RS12715 -0.7 -2.1 peptidylprolyl isomerase compare
RR42_RS08550 -0.7 -1.7 tail fiber protein compare
RR42_RS14400 -0.7 -2.3 isopropylmalate isomerase compare
RR42_RS18215 -0.7 -2.8 amidohydrolase compare
RR42_RS06895 -0.7 -1.6 hypothetical protein compare
RR42_RS06020 -0.7 -0.4 Fe-S cluster assembly transcriptional regulator IscR compare
RR42_RS32580 -0.7 -2.6 GntR family transcriptional regulator compare
RR42_RS29040 -0.7 -1.2 histidyl-tRNA synthetase compare
RR42_RS23110 -0.7 -1.0 isochorismatase compare
RR42_RS17235 -0.7 -2.6 poly(A) polymerase compare
RR42_RS14125 -0.7 -1.7 metal-binding protein compare
RR42_RS24575 -0.7 -1.2 endoribonuclease L-PSP compare
RR42_RS04470 -0.7 -3.8 prephenate dehydrogenase compare
RR42_RS33860 -0.7 -1.6 3-demethylubiquinone-9 3-methyltransferase compare
RR42_RS14590 -0.7 -2.1 hypothetical protein compare
RR42_RS31535 -0.7 -1.3 transcriptional regulator compare
RR42_RS31385 -0.7 -3.0 GntR family transcriptional regulator compare
RR42_RS22330 -0.7 -1.7 ester cyclase compare
RR42_RS31775 -0.7 -2.0 HxlR family transcriptional regulator compare
RR42_RS33695 -0.7 -1.4 membrane protein compare
RR42_RS01775 -0.7 -2.3 glutamate--cysteine ligase compare
RR42_RS16495 -0.7 -1.8 branched-chain amino acid aminotransferase compare
RR42_RS13365 -0.7 -0.9 peptidase P60 compare
RR42_RS16335 -0.7 -1.2 hypothetical protein compare
RR42_RS17745 -0.7 -1.4 hypothetical protein compare
RR42_RS16445 -0.7 -2.1 hypothetical protein compare
RR42_RS00345 -0.7 -1.2 LysR family transcriptional regulator compare
RR42_RS14820 -0.7 -1.5 hypothetical protein compare
RR42_RS36245 -0.7 -1.3 excisionase compare
RR42_RS27570 -0.7 -1.4 murein hydrolase effector protein compare
RR42_RS00900 -0.7 -1.0 2-hydroxychromene-2-carboxylate isomerase compare
RR42_RS00300 -0.7 -2.2 kinase compare
RR42_RS11715 -0.7 -2.6 DNA-binding protein compare
RR42_RS21220 -0.7 -0.9 iron transporter FeoB compare
RR42_RS07825 -0.7 -1.8 D-amino acid oxidase compare
RR42_RS07575 -0.7 -1.7 hypothetical protein compare
RR42_RS16670 -0.7 -1.5 cytochrome C compare
RR42_RS22710 -0.7 -1.5 short-chain dehydrogenase compare
RR42_RS01105 -0.7 -1.8 membrane protein compare
RR42_RS29545 -0.7 -1.9 mannosyltransferase compare
RR42_RS03875 -0.7 -1.5 nucleoside 2-deoxyribosyltransferase compare
RR42_RS03570 -0.6 -2.0 membrane protein compare
RR42_RS31790 -0.6 -0.9 nitrite reductase compare
RR42_RS17590 -0.6 -1.3 16S rRNA methyltransferase compare
RR42_RS15120 -0.6 -0.9 4-oxalocrotonate tautomerase compare
RR42_RS28545 -0.6 -1.6 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) (from data) compare
RR42_RS21460 -0.6 -2.3 hypothetical protein compare
RR42_RS13675 -0.6 -1.7 short-chain dehydrogenase compare
RR42_RS19695 -0.6 -1.2 cytochrome C protein compare
RR42_RS15205 -0.6 -1.2 pyridoxamine 5'-phosphate oxidase compare
RR42_RS03395 -0.6 -2.2 membrane protein compare
RR42_RS26450 -0.6 -1.5 histidinol dehydrogenase compare


Specific Phenotypes

For 1 genes in this experiment

For oxygen_nitrate Sodium nitrate in Cupriavidus basilensis FW507-4G11

For oxygen_nitrate Sodium nitrate across organisms