Experiment set9IT032 for Cupriavidus basilensis FW507-4G11

Compare to:

Defined media with exometabolites; 10% oxygen; 5 mM nitrate

200 most detrimental genes:

  gene name fitness t score description  
RR42_RS06875 +2.1 1.9 hypothetical protein compare
RR42_RS06845 +1.8 2.1 hypothetical protein compare
RR42_RS15525 +1.8 2.1 hypothetical protein compare
RR42_RS18825 +1.7 3.2 ubiquinol-cytochrome C reductase compare
RR42_RS34815 +1.6 6.4 diguanylate cyclase compare
RR42_RS05315 +1.2 6.3 fatty acid desaturase compare
RR42_RS06730 +1.2 2.4 hypothetical protein compare
RR42_RS05965 +1.2 2.4 malonic semialdehyde reductase compare
RR42_RS12130 +1.1 3.5 hypothetical protein compare
RR42_RS02880 +1.1 4.3 universal stress protein UspA compare
RR42_RS09180 +1.1 1.0 Rrf2 family transcriptional regulator compare
RR42_RS30765 +1.1 1.6 tRNA-Arg compare
RR42_RS20440 +1.1 1.5 histidine kinase compare
RR42_RS35875 +1.1 4.6 UDP-galactose-4-epimerase compare
RR42_RS31205 +1.0 2.0 phospho-N-acetylmuramoyl-pentapeptide transferase compare
RR42_RS19860 +1.0 1.5 tartronate semialdehyde reductase compare
RR42_RS00600 +1.0 1.8 DeoR family transcriptional regulator compare
RR42_RS34940 +1.0 2.3 bb3-type cytochrome oxidase subunit IV compare
RR42_RS22230 +1.0 1.6 hypothetical protein compare
RR42_RS07380 +1.0 1.7 dihydrolipoamide dehydrogenase compare
RR42_RS12085 +1.0 2.4 glyoxalase compare
RR42_RS27470 +1.0 1.9 peroxiredoxin OsmC compare
RR42_RS32050 +1.0 2.6 AraC family transcriptional regulator compare
RR42_RS02470 +1.0 1.7 dihydroneopterin triphosphate pyrophosphatase compare
RR42_RS26200 +1.0 2.1 hypothetical protein compare
RR42_RS05670 +1.0 1.7 urease subunit beta compare
RR42_RS32585 +0.9 1.1 cytochrome C oxidase compare
RR42_RS05375 +0.9 3.4 hemoglobin-like protein compare
RR42_RS02065 +0.9 2.0 phosphate starvation-inducible protein PsiF compare
RR42_RS17565 +0.9 8.9 LysR family transcriptional regulator compare
RR42_RS12550 +0.9 2.3 hypothetical protein compare
RR42_RS13275 +0.9 3.5 antibiotic biosynthesis monooxygenase compare
RR42_RS22925 +0.9 4.2 RND transporter compare
RR42_RS13130 +0.9 2.2 membrane protein compare
RR42_RS04255 +0.9 0.9 chemotaxis protein CheW compare
RR42_RS25600 +0.9 3.2 AraC family transcriptional regulator compare
RR42_RS03080 +0.9 1.7 recombinase RecA compare
RR42_RS15465 +0.9 1.5 TonB-dependent receptor compare
RR42_RS12015 +0.9 1.4 dihydrolipoamide acyltransferase compare
RR42_RS12430 +0.9 2.3 LysR family transcriptional regulator compare
RR42_RS09780 +0.9 2.3 hypothetical protein compare
RR42_RS32035 +0.9 2.1 short-chain dehydrogenase compare
RR42_RS34215 +0.9 1.3 ferredoxin compare
RR42_RS08425 +0.9 1.8 hypothetical protein compare
RR42_RS17880 +0.8 1.0 hypothetical protein compare
RR42_RS00385 +0.8 3.0 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase compare
RR42_RS05310 +0.8 2.6 hypothetical protein compare
RR42_RS19645 +0.8 1.5 DNA topoisomerase compare
RR42_RS15000 +0.8 2.2 GTP cyclohydrolase compare
RR42_RS05330 +0.8 2.9 xanthine dehydrogenase compare
RR42_RS36355 +0.8 1.9 (2Fe-2S)-binding protein compare
RR42_RS21505 +0.8 1.7 hypothetical protein compare
RR42_RS18120 +0.8 0.9 cell division protein MraZ compare
RR42_RS02860 +0.8 2.3 hypothetical protein compare
RR42_RS03020 +0.8 0.9 MarR family transcriptional regulator compare
RR42_RS25765 +0.8 2.3 hypothetical protein compare
RR42_RS35110 +0.8 1.2 hypothetical protein compare
RR42_RS05300 +0.8 5.3 TonB-dependent receptor compare
RR42_RS32805 +0.8 1.8 damage-inducible protein compare
RR42_RS03330 +0.8 2.9 GYD family protein compare
RR42_RS10310 +0.8 1.5 NADPH:quinone reductase compare
RR42_RS25895 +0.7 2.3 IclR family transcriptional regulator compare
RR42_RS15470 +0.7 0.8 biopolymer transporter ExbD compare
RR42_RS13200 +0.7 5.5 stationary phase survival protein SurE compare
RR42_RS06000 +0.7 1.7 antibiotic biosynthesis monooxygenase compare
RR42_RS25510 +0.7 1.2 short-chain dehydrogenase compare
RR42_RS36400 +0.7 1.0 hypothetical protein compare
RR42_RS35725 +0.7 1.5 flagellar biosynthesis protein FlgB compare
RR42_RS25970 +0.7 2.3 acyl-CoA dehydrogenase compare
RR42_RS23140 +0.7 0.9 peptidylprolyl isomerase compare
RR42_RS09435 +0.7 2.1 DNA glycosylase compare
RR42_RS22030 +0.7 1.5 hypothetical protein compare
RR42_RS04015 +0.7 1.1 RNA polymerase sigma factor compare
RR42_RS32770 +0.7 3.4 transglycosylase compare
RR42_RS31020 +0.7 1.3 hypothetical protein compare
RR42_RS15770 +0.7 1.4 hypothetical protein compare
RR42_RS33250 +0.7 2.8 tyrosine protein kinase compare
RR42_RS36530 +0.7 2.9 hypothetical protein compare
RR42_RS02875 +0.7 5.0 serine/threonine protein kinase compare
RR42_RS24460 +0.7 2.4 hypothetical protein compare
RR42_RS22935 +0.7 2.6 metal transporter compare
RR42_RS26440 +0.7 1.5 ABC transporter permease compare
RR42_RS22090 +0.7 2.8 hypothetical protein compare
RR42_RS05290 +0.7 1.7 ankyrin compare
RR42_RS06930 +0.7 1.1 hypothetical protein compare
RR42_RS31655 +0.7 2.9 hypothetical protein compare
RR42_RS15765 +0.7 2.4 hypothetical protein compare
RR42_RS14220 +0.7 2.1 ferredoxin-NADP reductase compare
RR42_RS19900 +0.6 0.8 MerR family transcriptional regulator compare
RR42_RS10845 +0.6 1.6 cupin compare
RR42_RS05945 +0.6 1.1 thioredoxin compare
RR42_RS16430 +0.6 2.2 transposase compare
RR42_RS02500 +0.6 0.8 TetR family transcriptional regulator compare
RR42_RS19090 +0.6 0.6 cytochrome C compare
RR42_RS04110 +0.6 2.5 pilus assembly protein TadG compare
RR42_RS08945 +0.6 1.0 hypothetical protein compare
RR42_RS08770 +0.6 0.7 2-nitropropane dioxygenase compare
RR42_RS20880 +0.6 1.7 hypothetical protein compare
RR42_RS19960 +0.6 2.2 TetR family transcriptional regulator compare
RR42_RS13270 +0.6 3.8 recombination protein RecR compare
RR42_RS05295 +0.6 3.0 hypothetical protein compare
RR42_RS34485 +0.6 1.6 AraC family transcriptional regulator compare
RR42_RS34325 +0.6 2.3 hypothetical protein compare
RR42_RS00760 +0.6 1.6 hypothetical protein compare
RR42_RS10520 +0.6 2.5 3-oxoacyl-ACP reductase compare
RR42_RS01705 +0.6 1.8 Fis family transcriptional regulator compare
RR42_RS09790 +0.6 2.2 ABC transporter compare
RR42_RS20575 +0.6 1.7 hypothetical protein compare
RR42_RS36545 +0.6 2.6 3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase compare
RR42_RS32775 +0.6 1.6 hypothetical protein compare
RR42_RS31505 +0.6 1.4 hypothetical protein compare
RR42_RS10240 +0.6 1.2 hypothetical protein compare
RR42_RS13180 +0.6 2.7 3'-5' exonuclease compare
RR42_RS29610 +0.6 1.0 cytochrome C2 compare
RR42_RS36315 +0.6 2.0 fructose 2,6-bisphosphatase compare
RR42_RS02855 +0.6 2.8 dimethylallyladenosine tRNA methylthiotransferase compare
RR42_RS20030 +0.6 3.1 ABC transporter permease compare
RR42_RS32965 +0.6 2.5 salicylaldehyde dehydrogenase compare
RR42_RS03185 +0.6 1.6 branched-chain amino acid permease compare
RR42_RS06850 +0.6 1.7 hypothetical protein compare
RR42_RS04180 +0.6 1.0 methyltransferase compare
RR42_RS33440 +0.6 2.0 LysR family transcriptional regulator compare
RR42_RS05750 +0.6 1.2 fructose 2,6-bisphosphatase compare
RR42_RS07200 +0.6 1.6 hypothetical protein compare
RR42_RS33770 +0.6 2.7 cobalamin biosynthesis protein CobS compare
RR42_RS07870 +0.6 1.7 alkyl hydroperoxide reductase compare
RR42_RS12925 +0.6 1.1 ATPase compare
RR42_RS02895 +0.6 3.1 hypothetical protein compare
RR42_RS21630 +0.6 1.3 Asp/Glu racemase compare
RR42_RS02210 +0.6 0.6 succinate dehydrogenase compare
RR42_RS11280 +0.6 0.7 phenylacetic acid degradation protein compare
RR42_RS32495 +0.6 1.4 shikimate kinase compare
RR42_RS03545 +0.6 2.0 hypothetical protein compare
RR42_RS13935 +0.6 1.4 hemin transporter compare
RR42_RS04980 +0.6 1.3 hypothetical protein compare
RR42_RS23910 +0.6 1.4 hypothetical protein compare
RR42_RS03895 +0.6 1.9 paraquat-inducible protein A compare
RR42_RS05920 +0.6 2.6 HrcA family transcriptional regulator compare
RR42_RS37320 +0.6 1.0 hypothetical protein compare
RR42_RS27790 +0.6 1.1 LuxR family transcriptional regulator compare
RR42_RS36730 +0.6 1.9 hypothetical protein compare
RR42_RS22795 +0.6 2.5 hypothetical protein compare
RR42_RS21015 +0.6 2.0 mannose-1-phosphate guanyltransferase compare
RR42_RS26995 +0.6 1.3 iron transporter compare
RR42_RS24985 +0.6 1.8 hypothetical protein compare
RR42_RS18815 +0.6 1.4 cytochrome C compare
RR42_RS33600 +0.6 1.0 oxidoreductase compare
RR42_RS31995 +0.5 1.1 flavin reductase compare
RR42_RS19825 +0.5 1.7 LysR family transcriptional regulator compare
RR42_RS09300 +0.5 1.0 aromatic ring-opening dioxygenase LigB compare
RR42_RS36550 +0.5 1.7 3-hydroxyacyl-CoA dehydrogenase compare
RR42_RS23550 +0.5 1.7 flagellar export protein FliJ compare
RR42_RS34650 +0.5 1.6 LacI family transcriptional regulator compare
RR42_RS03320 +0.5 1.7 transcriptional regulator compare
RR42_RS13905 +0.5 2.2 fumarate hydratase compare
RR42_RS32325 +0.5 2.1 magnesium chelatase compare
RR42_RS24955 +0.5 2.1 LysR family transcriptional regulator compare
RR42_RS34235 +0.5 2.8 5'-nucleotidase compare
RR42_RS27995 +0.5 1.3 RelE toxin compare
RR42_RS00535 +0.5 4.0 IMP dehydrogenase compare
RR42_RS27290 +0.5 1.0 hypothetical protein compare
RR42_RS23540 +0.5 1.9 alpha-ketoglutarate-dependent dioxygenase compare
RR42_RS32590 +0.5 0.5 cytochrome o ubiquinol oxidase subunit III compare
RR42_RS10490 +0.5 1.0 DNA-binding protein compare
RR42_RS35855 +0.5 2.7 hypothetical protein compare
RR42_RS06785 +0.5 1.7 hypothetical protein compare
RR42_RS19740 +0.5 1.6 16S rRNA methyltransferase compare
RR42_RS08690 +0.5 1.4 hypothetical protein compare
RR42_RS18805 +0.5 1.4 peptidase compare
RR42_RS27230 +0.5 1.4 DNA-binding protein compare
RR42_RS26730 +0.5 2.4 Fe-S oxidoreductase compare
RR42_RS34935 +0.5 0.9 cytochrome C oxidase subunit IV compare
RR42_RS26285 +0.5 1.7 ureidoglycolate hydrolase compare
RR42_RS13255 +0.5 1.8 hydroxymethylglutaryl-CoA lyase compare
RR42_RS10705 +0.5 2.3 hypothetical protein compare
RR42_RS31940 +0.5 0.9 2-nitropropane dioxygenase compare
RR42_RS23995 +0.5 2.0 hypothetical protein compare
RR42_RS05325 +0.5 2.5 adenine deaminase compare
RR42_RS25455 +0.5 1.0 acetyl-CoA acetyltransferase compare
RR42_RS16220 +0.5 0.4 DNA polymerase III subunit chi compare
RR42_RS16925 +0.5 1.5 histidine utilization repressor compare
RR42_RS02925 +0.5 2.5 membrane protein compare
RR42_RS35775 +0.5 1.2 chemotaxis protein CheZ compare
RR42_RS36045 +0.5 2.3 hypothetical protein compare
RR42_RS12760 +0.5 3.1 hypothetical protein compare
RR42_RS36435 +0.5 2.8 LuxR family transcriptional regulator compare
RR42_RS05305 +0.5 1.4 NADP oxidoreductase compare
RR42_RS17735 +0.5 1.5 hypothetical protein compare
RR42_RS09245 +0.5 2.2 hypothetical protein compare
RR42_RS29280 +0.5 0.7 hypothetical protein compare
RR42_RS14885 +0.5 1.4 DNA-directed RNA polymerase sigma-70 factor compare
RR42_RS32380 +0.5 2.3 CoA-transferase compare
RR42_RS31330 +0.5 0.7 LysR family transcriptional regulator compare
RR42_RS31910 +0.5 0.4 acyl-CoA dehydrogenase compare
RR42_RS24855 +0.5 2.7 MFS transporter compare
RR42_RS03110 +0.5 1.8 pilus assembly protein TapA compare
RR42_RS17885 +0.5 2.3 ABC transporter permease compare
RR42_RS02420 +0.5 0.6 SAM-dependent methyltransferase compare
RR42_RS31435 +0.5 0.7 hypothetical protein compare
RR42_RS35810 +0.5 2.5 flagellar motor protein MotB compare


Specific Phenotypes

For 1 genes in this experiment

For oxygen_nitrate Sodium nitrate in Cupriavidus basilensis FW507-4G11

For oxygen_nitrate Sodium nitrate across organisms