Experiment set9IT031 for Methanococcus maripaludis S2

Compare to:

H2 McCas with 5 minute oxygen exposure

200 most important genes:

  gene name fitness t score description  
MMP_RS03475 -4.2 -1.0 hypothetical protein compare
MMP_RS08300 -4.2 -2.0 metal-sulfur cluster assembly factor compare
MMP_RS02900 -4.1 -0.9 imidazoleglycerol-phosphate dehydratase HisB compare
MMP_RS09020 -4.0 -2.5 hypothetical protein compare
MMP_RS05920 -3.8 -1.1 50S ribosomal protein L37e compare
MMP_RS01175 -3.8 -6.4 triphosphoribosyl-dephospho-CoA synthase compare
MMP_RS07075 -3.7 -8.5 phosphomannomutase/phosphoglucomutase compare
MMP_RS03960 -3.6 -1.6 hypothetical protein compare
MMP_RS01880 -3.5 -12.8 DegT/DnrJ/EryC1/StrS family aminotransferase compare
MMP_RS08790 -3.5 -3.0 translation initiation factor IF-2 subunit alpha compare
MMP_RS08650 -3.5 -5.1 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
MMP_RS01020 -3.5 -1.5 3 4-dihydroxy-2-butanone-4-phosphate synthase compare
MMP_RS03015 -3.4 -15.6 GTP 3' 8-cyclase MoaA compare
MMP_RS01900 -3.4 -20.3 hypothetical protein compare
MMP_RS01885 -3.4 -11.7 Gfo/Idh/MocA family oxidoreductase compare
MMP_RS00110 -3.4 -5.2 hypothetical protein compare
MMP_RS01725 -3.4 -6.9 class I SAM-dependent methyltransferase family protein compare
MMP_RS01890 -3.3 -8.1 nucleotide sugar dehydrogenase compare
MMP_RS01875 -3.2 -15.4 N-acetyltransferase compare
MMP_RS03035 -3.2 -7.2 4-hydroxy-tetrahydrodipicolinate synthase compare
MMP_RS05515 -3.2 -9.9 cyclic pyranopterin monophosphate synthase MoaC compare
MMP_RS05550 -3.2 -1.0 cation:proton antiporter compare
MMP_RS00515 -3.2 -1.7 DUF655 domain-containing protein compare
MMP_RS01925 -3.2 -14.3 DUF1616 domain-containing protein compare
MMP_RS01960 -3.2 -1.4 hypothetical protein compare
MMP_RS06355 -3.2 -3.6 molybdenum cofactor biosynthesis protein MoaE compare
MMP_RS02145 -3.2 -10.6 winged helix-turn-helix transcriptional regulator compare
MMP_RS06670 -3.1 -9.4 glucose-6-phosphate isomerase compare
MMP_RS03640 -3.1 -6.0 archaeal proteasome endopeptidase complex subunit beta compare
MMP_RS04720 -3.1 -4.6 DedA family protein compare
MMP_RS03315 -3.1 -1.7 ferrous iron transport protein A compare
MMP_RS03445 -3.1 -1.4 methanogenesis marker 17 protein compare
MMP_RS08720 -3.0 -2.2 4Fe-4S binding protein compare
MMP_RS06625 -3.0 -3.3 DNA primase compare
MMP_RS01905 -3.0 -16.5 glycosyltransferase compare
MMP_RS01380 -3.0 -8.4 PHP domain-containing protein compare
MMP_RS06725 -2.9 -14.3 hypothetical protein compare
MMP_RS01265 -2.9 -4.7 hypothetical protein compare
MMP_RS03400 -2.9 -3.0 archease compare
MMP_RS03700 -2.9 -13.8 sodium:proton antiporter compare
MMP_RS02010 -2.9 -14.1 PHP domain-containing protein compare
MMP_RS07755 -2.9 -2.0 DUF555 domain-containing protein compare
MMP_RS07380 -2.9 -3.5 transcription elongation factor Spt5 compare
MMP_RS06120 -2.9 -3.9 UPF0147 family protein compare
MMP_RS06350 -2.8 -8.4 HesA/MoeB/ThiF family protein compare
MMP_RS06900 -2.8 -4.4 coenzyme F420-reducing hydrogenase FrhD protein compare
MMP_RS02355 -2.8 -4.2 30S ribosomal protein S27ae compare
MMP_RS00810 -2.7 -11.6 topoisomerase DNA-binding C4 zinc finger domain-containing protein compare
MMP_RS01795 -2.7 -2.5 methanogenesis marker 6 protein compare
MMP_RS04615 -2.7 -6.0 PDGLE domain-containing protein compare
MMP_RS03600 -2.7 -3.3 triose-phosphate isomerase compare
MMP_RS08435 -2.7 -3.0 Era-like GTP-binding protein compare
MMP_RS03435 -2.7 -2.7 ketol-acid reductoisomerase compare
MMP_RS01325 -2.7 -2.5 dihydroneopterin aldolase family protein compare
MMP_RS04780 -2.7 -3.7 ribonuclease P compare
MMP_RS00895 -2.7 -5.8 hypothetical protein compare
MMP_RS03580 -2.7 -5.6 signal recognition particle-docking protein FtsY compare
MMP_RS06980 -2.7 -10.5 tRNA 2-thiocytidine biosynthesis TtcA family protein compare
MMP_RS07605 -2.7 -6.0 diadenylate cyclase compare
MMP_RS04685 -2.7 -4.8 DUF126 domain-containing protein compare
MMP_RS07545 -2.6 -1.5 HTH domain-containing protein compare
MMP_RS00040 -2.6 -8.7 TIGR03576 family pyridoxal phosphate-dependent enzyme compare
MMP_RS01005 -2.6 -2.1 riboflavin synthase compare
MMP_RS07635 -2.6 -9.3 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMP_RS01365 -2.6 -3.5 archaeal proteasome endopeptidase complex subunit alpha compare
MMP_RS08745 -2.6 -8.9 CDP-2 3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMP_RS05265 -2.6 -3.1 2-isopropylmalate synthase compare
MMP_RS01755 -2.6 -1.9 DUF2097 domain-containing protein compare
MMP_RS06400 -2.5 -2.1 4Fe-4S binding protein compare
MMP_RS02195 -2.5 -5.8 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase compare
MMP_RS05845 -2.5 -2.5 tRNA-intron lyase compare
MMP_RS06630 -2.5 -1.4 UPF0058 family protein compare
MMP_RS08715 -2.5 -2.1 formylmethanofuran dehydrogenase subunit B compare
MMP_RS04955 -2.5 -7.7 DNA topoisomerase I compare
MMP_RS02800 -2.5 -6.6 nucleotidyltransferase domain-containing protein compare
MMP_RS07750 -2.5 -5.7 DUF357 domain-containing protein compare
MMP_RS08820 -2.5 -8.6 hypothetical protein compare
MMP_RS08440 -2.5 -3.8 cell division protein SepF compare
MMP_RS01610 -2.5 -4.3 hypothetical protein compare
MMP_RS08635 -2.5 -2.8 UbiA family prenyltransferase compare
MMP_RS02240 -2.5 -4.0 methanogenesis marker 7 protein compare
MMP_RS03025 -2.4 -7.5 molybdenum cofactor guanylyltransferase compare
MMP_RS01910 -2.4 -13.4 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
MMP_RS01895 -2.4 -17.2 flippase compare
MMP_RS02875 -2.4 -11.3 chorismate pyruvate-lyase family protein compare
MMP_RS01500 -2.4 -3.8 CBS domain-containing protein compare
MMP_RS07390 -2.4 -3.3 cell division protein FtsZ compare
MMP_RS01220 -2.4 -9.4 hypothetical protein compare
MMP_RS04710 -2.3 -2.7 hypothetical protein compare
MMP_RS05640 -2.3 -9.2 UTP--glucose-1-phosphate uridylyltransferase GalU compare
MMP_RS01800 -2.3 -6.0 TIGR00303 family protein compare
MMP_RS05555 -2.3 -1.9 DUF4040 domain-containing protein compare
MMP_RS04090 -2.3 -4.4 hypothetical protein compare
MMP_RS03095 -2.3 -8.3 diphthine synthase compare
MMP_RS06105 -2.2 -10.2 hydrogenase maturation peptidase HycI compare
MMP_RS06925 -2.2 -3.4 ribonuclease VapC4 compare
MMP_RS00985 -2.2 -8.0 CDC48 family AAA ATPase compare
MMP_RS08595 -2.2 -1.7 flagellar protein C compare
MMP_RS09055 -2.2 -1.3 CAP domain-containing protein compare
MMP_RS04585 -2.2 -10.0 AIR synthase related protein compare
MMP_RS07525 -2.2 -6.5 4Fe-4S binding protein compare
MMP_RS05250 -2.2 -2.8 NFYB/HAP3 family transcription factor subunit compare
MMP_RS02135 -2.2 -6.9 DUF5612 domain-containing protein compare
MMP_RS01915 -2.2 -13.7 DUF354 domain-containing protein compare
MMP_RS03110 -2.2 -8.5 glycosyltransferase family 2 protein compare
MMP_RS00735 -2.2 -5.0 5 10-methenyltetrahydromethanopterin hydrogenase compare
MMP_RS07845 -2.1 -2.6 LL-diaminopimelate aminotransferase compare
MMP_RS00305 -2.1 -2.5 phosphoribosyl-ATP diphosphatase compare
MMP_RS06340 -2.1 -8.5 phosphoadenosine phosphosulfate reductase family protein compare
MMP_RS05930 -2.1 -3.0 3-isopropylmalate dehydratase large subunit compare
MMP_RS00115 -2.1 -13.1 radical SAM protein compare
MMP_RS07575 -2.1 -3.5 RNA ligase partner protein compare
MMP_RS00315 -2.1 -5.6 Nif3-like dinuclear metal center hexameric protein compare
MMP_RS01085 -2.1 -2.3 hypothetical protein compare
MMP_RS06020 -2.1 -5.7 archaeoflavoprotein AfpA compare
MMP_RS00725 -2.1 -6.4 5 10-methenyltetrahydromethanopterin hydrogenase cofactor biosynthesis protein HmdC compare
MMP_RS07330 -2.0 -17.1 membrane protein compare
MMP_RS06295 -2.0 -7.2 methanogenesis marker 14 protein compare
MMP_RS04775 -2.0 -4.5 adenosylhomocysteinase compare
MMP_RS02345 -2.0 -3.7 GTP-dependent dephospho-CoA kinase family protein compare
MMP_RS08210 -2.0 -2.6 phosphatidylglycerophosphatase A compare
MMP_RS05635 -2.0 -13.4 NAD-dependent epimerase/dehydratase family protein compare
MMP_RS03390 -2.0 -8.3 malate dehydrogenase compare
MMP_RS03205 -2.0 -1.9 peptidyl-tRNA hydrolase Pth2 compare
MMP_RS00300 -2.0 -1.0 6 7-dimethyl-8-ribityllumazine synthase compare
MMP_RS01225 -2.0 -6.5 DUF5379 domain-containing protein compare
MMP_RS05815 -2.0 -2.6 NOL1/NOP2/sun family putative RNA methylase compare
MMP_RS06865 -2.0 -2.4 HypC/HybG/HupF family hydrogenase formation chaperone compare
MMP_RS06270 -2.0 -6.8 TIGR00300 family protein compare
MMP_RS07700 -2.0 -9.8 DUF1188 domain-containing protein compare
MMP_RS05580 -2.0 -15.0 glycosyltransferase compare
MMP_RS04850 -2.0 -13.7 UPF0254 family protein compare
MMP_RS01955 -1.9 -3.8 hypothetical protein compare
MMP_RS06730 -1.9 -2.2 phosphopantothenate/pantothenate synthetase compare
MMP_RS02340 -1.9 -2.6 DNA-directed RNA polymerase subunit E'' compare
MMP_RS05540 -1.9 -3.5 hypothetical protein compare
MMP_RS00750 -1.9 -3.0 fumarate hydratase compare
MMP_RS00730 -1.9 -3.8 5 10-methenyltetrahydromethanopterin hydrogenase cofactor biosynthesis protein HmdB compare
MMP_RS06230 -1.9 -3.0 helix-turn-helix domain-containing protein compare
MMP_RS04605 -1.9 -6.6 cobalt ECF transporter T component CbiQ compare
MMP_RS04620 -1.9 -13.0 cobalt transporter CbiM compare
MMP_RS06885 -1.9 -3.8 50S ribosome-binding GTPase compare
MMP_RS07600 -1.8 -3.1 Ni-sirohydrochlorin a c-diamide synthase compare
MMP_RS00685 -1.8 -4.9 2-phospho-L-lactate guanylyltransferase compare
MMP_RS05345 -1.8 -8.3 hypothetical protein compare
MMP_RS06895 -1.8 -2.1 selenocysteine-specific translation elongation factor compare
MMP_RS02885 -1.8 -12.0 molybdopterin biosynthesis protein compare
MMP_RS07420 -1.8 -4.4 metalloregulator ArsR/SmtB family transcription factor compare
MMP_RS06110 -1.8 -4.6 ATP-dependent protease LonB compare
MMP_RS06285 -1.8 -2.0 precorrin-6Y C5 15-methyltransferase (decarboxylating) subunit CbiT compare
MMP_RS06685 -1.8 -11.4 formate dehydrogenase H subunit alpha selenocysteine-containing compare
MMP_RS07200 -1.7 -7.1 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase compare
MMP_RS00900 -1.7 -2.5 50S ribosomal protein L39e compare
MMP_RS07695 -1.7 -4.5 DUF3236 domain-containing protein compare
MMP_RS01830 -1.7 -2.2 tRNA-Val compare
MMP_RS08070 -1.7 -8.0 DUF2096 domain-containing protein compare
MMP_RS00695 -1.7 -1.2 biotin--[acetyl-CoA-carboxylase] ligase compare
MMP_RS05425 -1.7 -5.6 monovalent cation/H+ antiporter complex subunit F compare
MMP_RS06395 -1.7 -4.4 ThiF family adenylyltransferase compare
MMP_RS07135 -1.7 -9.4 coenzyme F420 hydrogenase subunit beta compare
MMP_RS06035 -1.7 -10.2 glycosyltransferase family 2 protein compare
MMP_RS08460 -1.7 -2.8 proteasome-activating nucleotidase compare
MMP_RS00050 -1.7 -8.9 AarF/UbiB family protein compare
MMP_RS06475 -1.7 -5.3 FAD-dependent oxidoreductase compare
MMP_RS00120 -1.7 -5.8 LysR family transcriptional regulator compare
MMP_RS04890 -1.7 -0.8 adenylyltransferase/cytidyltransferase family protein compare
MMP_RS02190 -1.6 -2.4 sulfopyruvate decarboxylase subunit alpha compare
MMP_RS01840 -1.6 -6.5 TIGR00289 family protein compare
MMP_RS03125 -1.6 -6.2 cell division ATPase MinD compare
MMP_RS01700 -1.6 -1.2 dihydroxy-acid dehydratase compare
MMP_RS07425 -1.6 -5.8 GTP-binding protein compare
MMP_RS06315 -1.6 -1.2 cobalt-precorrin-7 (C(5))-methyltransferase compare
MMP_RS07955 -1.6 -6.5 FumA C-terminus/TtdB family hydratase beta subunit compare
MMP_RS05445 -1.6 -7.6 CoB--CoM heterodisulfide reductase subunit B compare
MMP_RS00915 -1.6 -6.0 DUF116 domain-containing protein compare
MMP_RS06975 -1.6 -2.4 sulfide-dependent adenosine diphosphate thiazole synthase compare
MMP_RS07540 -1.6 -4.1 CBS domain-containing protein compare
MMP_RS07580 -1.6 -3.3 DUF356 domain-containing protein compare
MMP_RS06940 -1.6 -3.0 polyprenyl diphosphate synthase compare
MMP_RS01195 -1.6 -1.3 metalloregulator ArsR/SmtB family transcription factor compare
MMP_RS06130 -1.6 -3.5 peptidylprolyl isomerase compare
MMP_RS08590 -1.6 -5.7 flagellin compare
MMP_RS07735 -1.6 -1.0 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha compare
MMP_RS05450 -1.6 -5.0 CoB--CoM heterodisulfide reductase subunit C compare
MMP_RS08320 -1.6 -4.9 molybdopterin molybdotransferase MoeA compare
MMP_RS01720 -1.6 -1.1 replication factor C large subunit compare
MMP_RS07005 -1.5 -0.7 4Fe-4S binding protein compare
MMP_RS07730 -1.5 -2.2 pyruvate synthase subunit beta compare
MMP_RS02245 -1.5 -4.2 hypothetical protein compare
MMP_RS01920 -1.5 -10.3 glycosyltransferase family 2 protein compare
MMP_RS04500 -1.5 -11.9 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
MMP_RS06215 -1.5 -3.1 30S ribosomal protein S6e compare
MMP_RS01270 -1.5 -11.3 prepilin peptidase compare
MMP_RS00520 -1.5 -1.6 RNA polymerase Rpb4 family protein compare
MMP_RS06855 -1.5 -9.5 hypothetical protein compare
MMP_RS01335 -1.5 -2.6 prefoldin subunit beta compare
MMP_RS01545 -1.4 -1.4 CBS domain-containing protein compare
MMP_RS02935 -1.4 -5.2 A24 family peptidase compare
MMP_RS05500 -1.4 -7.0 2-isopropylmalate synthase compare
MMP_RS00250 -1.4 -11.2 Flp pilus assembly complex ATPase component TadA compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis S2 in stress experiments