Experiment set9IT029 for Synechococcus elongatus PCC 7942
12:12 LD cycle bioreactor
Group: circadianMedia: BG11, pH=7.5
Culturing: SynE_ML6.2, phenometrics bioreactor, Aerobic, at 30 (C), shaken=none (air bubbled)
Growth: about 6.5 generations
By: Ben Rubin on 10/5/2015
Media components: 1.5 g/L Sodium nitrate, 0.04 g/L Potassium phosphate dibasic, 0.075 g/L Magnesium Sulfate Heptahydrate, 0.036 g/L Calcium chloride dihydrate, 0.006 g/L Citric Acid, 0.006 g/L Ferric ammonium citrate, 0.001 g/L EDTA (disodium salt), 0.02 g/L Sodium carbonate, Trace metal mix A5 (0.00286 g/L Boric Acid, 0.00181 g/L Manganese (II) chloride tetrahydrate, 0.000222 g/L Zinc sulfate heptahydrate, 0.00039 g/L Sodium Molybdate Dihydrate, 7.9e-05 g/L Copper (II) sulfate pentahydrate, 0.0494 mg/L Cobalt(II) nitrate hexahydrate)
Specific Phenotypes
For 3 genes in this experiment
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| Alginate metabolism | 1 |
| Mannose Metabolism | 1 |
| Serine-glyoxylate cycle | 1 |
| Succinate dehydrogenase | 1 |
| TCA Cycle | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Fructose and mannose metabolism
- Nucleotide sugars metabolism
- Citrate cycle (TCA cycle)
- Oxidative phosphorylation
- Benzoate degradation via CoA ligation
- Butanoate metabolism
- Reductive carboxylate cycle (CO2 fixation)
- Biosynthesis of phenylpropanoids
MetaCyc Pathways
Pathways that contain genes with specific phenotypes: