Experiment set9IT028 for Pseudomonas syringae pv. syringae B728a

Compare to:

KB with Lupeol 10 mM

200 most detrimental genes:

  gene name fitness t score description  
Psyr_4480 +1.4 3.1 outer membrane transport energization protein TonB compare
Psyr_3882 +1.3 2.7 conserved hypothetical protein compare
Psyr_4224 +1.3 3.5 conserved hypothetical protein compare
Psyr_2253 +1.2 3.5 Phosphonate metabolism compare
Psyr_0435 +1.2 1.7 membrane protein, putative compare
Psyr_0426 +1.2 2.2 lipoprotein, putative compare
Psyr_1875 +1.2 2.8 Enoyl-CoA hydratase/isomerase compare
Psyr_1202 +1.1 2.8 negative regulator of hrp expression HrpV compare
Psyr_2925 +1.1 3.4 Helix-turn-helix motif protein compare
Psyr_4801 +1.1 2.5 Outer membrane efflux protein compare
Psyr_4077 +1.0 3.0 Methylated-DNA-[protein]-cysteine S-methyltransferase compare
Psyr_3262 +1.0 1.5 dnaK suppressor protein, putative compare
Psyr_2694 +1.0 2.7 conserved hypothetical protein compare
Psyr_2285 +1.0 2.0 Twin-arginine translocation pathway signal compare
Psyr_1009 +1.0 3.2 Peptidylprolyl isomerase, FKBP-type compare
Psyr_2292 +1.0 2.1 L-glutaminase compare
Psyr_1334 +1.0 2.7 Cysteine desulfuration protein SufE compare
Psyr_3458 +1.0 1.0 Flagellar hook-basal body complex protein FliE compare
Psyr_5036 +1.0 1.9 Response regulator receiver compare
Psyr_1992 +0.9 1.1 Zinc-containing alcohol dehydrogenase superfamily compare
Psyr_2890 +0.9 3.6 amino acid ABC transporter ATP-binding protein, PAAT family compare
Psyr_1852 +0.9 1.8 conserved hypothetical protein compare
Psyr_2184 +0.9 2.2 Short-chain dehydrogenase/reductase SDR compare
Psyr_0248 +0.9 2.2 conserved hypothetical protein compare
Psyr_2507 +0.9 2.5 Endoribonuclease L-PSP compare
Psyr_0137 +0.9 1.3 outer membrane transport energization protein ExbD compare
Psyr_2647 +0.9 4.3 hypothetical protein compare
Psyr_2155 +0.9 2.8 Carbohydrate kinase, PfkB compare
Psyr_4789 +0.9 2.2 lipoprotein, putative compare
Psyr_4920 +0.8 1.5 conserved hypothetical bacteriophage protein compare
Psyr_2501 +0.8 1.4 Hemerythrin compare
Psyr_0635 +0.8 1.7 MaoC-like dehydratase compare
Psyr_0857 +0.8 1.8 [SSU ribosomal protein S18P]-alanine acetyltransferase compare
Psyr_2563 +0.8 2.1 HAD-superfamily hydrolase, subfamily IIA compare
Psyr_2787 +0.8 2.3 hypothetical protein compare
Psyr_1447 +0.8 1.4 conserved hypothetical protein compare
Psyr_3662 +0.7 1.7 NAD(P)H dehydrogenase (quinone) compare
Psyr_3867 +0.7 1.3 hypothetical protein compare
Psyr_1633 +0.7 1.4 MotA/TolQ/ExbB proton channel compare
Psyr_3555 +0.7 1.1 aspartate kinase compare
Psyr_2196 +0.7 1.3 Urease accessory protein UreG compare
Psyr_2481 +0.7 2.6 thiol peroxidase (atypical 2-Cys peroxiredoxin) compare
Psyr_4257 +0.7 2.3 Uncharacterized protein UPF0114 compare
Psyr_1487 +0.7 1.3 conserved hypothetical protein compare
Psyr_4487 +0.7 1.5 Carbohydrate kinase, PfkB compare
Psyr_2552 +0.7 1.5 cyclase/dehydrase compare
Psyr_1255 +0.7 1.9 conserved hypothetical protein compare
Psyr_3934 +0.7 1.4 Short-chain dehydrogenase/reductase SDR compare
Psyr_0148 +0.7 1.7 hypothetical protein compare
Psyr_0038 +0.7 1.9 Protein of unknown function DUF1161 compare
Psyr_5072 +0.7 1.3 Cobalamin synthesis protein/P47K:Cobalamin synthesis protein/P47K compare
Psyr_4050 +0.7 1.8 Protein of unknown function DUF479 compare
Psyr_2538 +0.7 2.1 Binding-protein-dependent transport systems inner membrane component compare
Psyr_3213 +0.7 2.6 Propeptide, PepSY amd peptidase M4 compare
Psyr_0630 +0.7 3.4 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
Psyr_2140 +0.6 2.1 conserved hypothetical protein compare
Psyr_3133 +0.6 1.0 Amidohydrolase 2 compare
Psyr_2984 +0.6 1.1 conserved hypothetical protein compare
Psyr_2894 +0.6 1.3 conserved hypothetical protein compare
Psyr_1250 +0.6 2.0 conserved hypothetical protein compare
Psyr_0170 +0.6 1.5 heat shock protein Hsp15 compare
Psyr_2262 +0.6 1.3 Peptidase M20:Peptidase M20 compare
Psyr_0864 +0.6 1.7 Protein of unknown function DUF393 compare
Psyr_2915 +0.6 1.7 transcriptional regulator, AraC family with amidase-like domain protein compare
Psyr_3083 +0.6 1.6 RND efflux system, outer membrane lipoprotein, NodT compare
Psyr_2055 +0.6 2.5 Transglutaminase-like protein compare
Psyr_2053 +0.6 2.0 moxR protein, putative compare
Psyr_3143 +0.6 1.2 general secretion pathway protein M, putative compare
Psyr_4417 +0.6 0.6 Ferredoxin--nitrite reductase compare
Psyr_4716 +0.6 1.6 Sarcosine oxidase, gamma subunit, heterotetrameric compare
Psyr_3480 +0.6 1.5 Flagellar basal-body rod protein FlgC compare
Psyr_2190 +0.6 1.2 NADH:flavin oxidoreductase/NADH oxidase compare
Psyr_1377 +0.6 1.5 CinA, C-terminal compare
Psyr_2362 +0.6 2.1 Silent information regulator protein Sir2 compare
Psyr_2918 +0.6 2.9 3-hydroxyacyl-CoA dehydrogenase, C-terminal:3-hydroxyacyl-CoA dehydrogenase, NAD-binding protein compare
Psyr_3093 +0.6 2.2 conserved hypothetical protein compare
Psyr_1832 +0.6 1.3 Exonuclease compare
Psyr_3142 +0.6 1.1 general secretion pathway protein N, putative compare
Psyr_3684 +0.6 1.3 NLP/P60 compare
Psyr_2734 +0.6 2.5 benzaldehyde dehydrogenase (NAD+) compare
Psyr_2360 +0.6 2.0 CBS compare
Psyr_0736 +0.6 1.8 umuC protein compare
Psyr_2415 +0.6 1.8 hypothetical protein compare
Psyr_4454 +0.6 1.3 HupE/UreJ protein compare
Psyr_3611 +0.6 1.9 Protein of unknown function DUF815 compare
Psyr_2838 +0.6 0.8 conserved hypothetical protein compare
Psyr_1811 +0.6 1.5 transcriptional regulator, GntR family compare
Psyr_3793 +0.6 1.5 Response regulator receiver:Transcriptional regulatory protein, C-terminal compare
Psyr_2434 +0.6 1.9 Carbohydrate kinase, PfkB compare
Psyr_2679 +0.6 1.7 Binding-protein-dependent transport systems inner membrane component compare
Psyr_3748 +0.5 2.8 GCN5-related N-acetyltransferase compare
Psyr_1497 +0.5 2.1 Heavy metal response regulator compare
Psyr_0889 +0.5 1.7 SpoVT/AbrB-like protein compare
Psyr_4450 +0.5 1.6 transcriptional regulator, TetR family compare
Psyr_1629 +0.5 1.7 Glutathione S-transferase, N-terminal:Glutathione S-transferase, C-terminal compare
Psyr_0425 +0.5 2.0 Beta-ketoacyl synthase:Beta-ketoacyl synthase compare
Psyr_0787 +0.5 1.7 Sulfate transporter/antisigma-factor antagonist STAS compare
Psyr_2900 +0.5 1.9 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase compare
Psyr_2116 +0.5 2.5 Deoxyguanosinetriphosphate triphosphohydrolase compare
Psyr_3507 +0.5 1.3 membrane protein, putative compare
Psyr_3127 +0.5 1.5 Response regulator receiver:Transcriptional regulatory protein, C-terminal compare
Psyr_3318 +0.5 2.7 conserved hypothetical protein compare
Psyr_4128 +0.5 2.7 sulfate adenylyltransferase subunit 2 compare
Psyr_4262 +0.5 1.1 lipoprotein, putative compare
Psyr_4813 +0.5 1.2 Short-chain dehydrogenase/reductase SDR compare
Psyr_3692 +0.5 1.0 conserved hypothetical protein compare
Psyr_2030 +0.5 1.3 Calcium-binding EF-hand compare
Psyr_1335 +0.5 2.7 Aminotransferase, class V compare
Psyr_2860 +0.5 1.4 hypothetical protein compare
Psyr_3116 +0.5 1.1 transcriptional regulator, CdaR family compare
Psyr_2439 +0.5 2.8 mannitol ABC transporter membrane protein / sorbitol ABC transporter membrane protein compare
Psyr_3830 +0.5 2.5 3-oxoacyl-[acyl-carrier protein] synthase compare
Psyr_3337 +0.5 1.1 gluconate kinase, SKI family compare
Psyr_3219 +0.5 2.3 Peptidase M24 compare
Psyr_1689 +0.5 1.5 conserved hypothetical protein compare
Psyr_1111 +0.5 0.8 Response regulator receiver:Transcriptional regulatory protein, C-terminal compare
Psyr_2737 +0.5 2.0 hypothetical protein compare
Psyr_3004 +0.5 1.3 transcriptional regulator, LysR family compare
Psyr_3604 +0.5 1.2 Acyl-CoA dehydrogenase, C-terminal:Acyl-CoA dehydrogenase, central region compare
Psyr_2132 +0.5 1.8 shikimate dehydrogenase compare
Psyr_3036 +0.5 1.0 transcriptional regulator, TetR family compare
Psyr_3570 +0.5 1.5 L-ornithine ABC transporter membrane protein / L-arginine ABC transporter membrane protein compare
Psyr_1843 +0.5 1.1 Protein of unknown function DUF1311 compare
Psyr_2100 +0.5 2.4 assimilatory nitrate reductase (NADH) beta subunit compare
Psyr_4113 +0.5 2.8 LppC putative lipoprotein compare
Psyr_3104 +0.5 0.7 phosphate ABC transporter membrane protein 2, PhoT family compare
Psyr_1022 +0.5 1.0 conserved hypothetical protein compare
Psyr_1210 +0.5 1.8 type III secretion protein HrcQa compare
Psyr_2564 +0.5 1.8 transcriptional regulator, GntR family compare
Psyr_5074 +0.5 2.2 conserved hypothetical protein compare
Psyr_2401 +0.5 1.7 extracellular solute-binding protein, family 1 compare
Psyr_3600 +0.5 1.3 transcriptional regulator, LysR family compare
Psyr_3712 +0.5 1.9 conserved hypothetical protein compare
Psyr_1337 +0.5 1.6 Conserved hypothetical protein ArsC related protein compare
Psyr_2402 +0.5 1.9 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II compare
Psyr_3653 +0.5 2.0 GGDEF domain protein compare
Psyr_2929 +0.5 1.2 transcriptional regulator, LysR family compare
Psyr_4939 +0.5 1.2 conserved hypothetical protein compare
Psyr_4481 +0.5 2.0 outer membrane transport energization protein ExbB compare
Psyr_0818 +0.5 1.5 ampE protein compare
Psyr_0142 +0.5 1.8 ABC transporter compare
Psyr_4466 +0.5 1.8 Thioredoxin compare
Psyr_3915 +0.5 1.7 Alpha/beta hydrolase fold protein compare
Psyr_0472 +0.5 2.1 Ham1-like protein compare
Psyr_1676 +0.5 1.9 1-aminocyclopropane-1-carboxylate deaminase, putative compare
Psyr_3195 +0.5 1.5 NolW-like protein compare
Psyr_1975 +0.5 0.9 Integrase, catalytic region compare
Psyr_2110 +0.5 2.8 diguanylate cyclase with PAS/PAC sensor compare
Psyr_3753 +0.5 1.9 Short-chain dehydrogenase/reductase SDR compare
Psyr_3176 +0.5 1.3 camphor resistance protein CrcB compare
Psyr_0900 +0.5 1.7 TRAP dicarboxylate transporter- DctP subunit compare
Psyr_3118 +0.5 1.5 transcriptional regulator, GntR family compare
Psyr_0013 +0.5 1.7 DNA-3-methyladenine glycosylase I compare
Psyr_3424 +0.5 1.6 conserved hypothetical protein compare
Psyr_0406 +0.5 2.2 Pilus assembly protein, PilQ compare
Psyr_1217 +0.4 1.1 Sigma-70 region 2:Sigma-70 region 4 compare
Psyr_3466 +0.4 0.7 Flagellin, C-terminal:Flagellin, N-terminal compare
Psyr_3910 +0.4 2.1 L-aspartate ABC transporter membrane protein / L-glutamate ABC transporter membrane protein compare
Psyr_4160 +0.4 1.3 Maf-like protein compare
Psyr_0954 +0.4 0.8 Protein of unknown function UPF0153 compare
Psyr_3125 +0.4 1.3 Nicotinamidase compare
Psyr_2870 +0.4 1.2 CDS compare
Psyr_2423 +0.4 1.4 hypothetical protein compare
Psyr_1430 +0.4 1.6 Protein of unknown function DUF1525 compare
Psyr_3610 +0.4 1.2 GAF compare
Psyr_4155 +0.4 0.8 Protein of unknown function DUF615 compare
Psyr_0789 +0.4 1.8 chemotaxis sensory transducer compare
Psyr_2469 +0.4 2.0 Propionyl-CoA carboxylase compare
Psyr_2765 +0.4 1.1 conserved domain protein compare
Psyr_0896 +0.4 1.2 Aldose 1-epimerase compare
Psyr_0053 +0.4 1.2 conserved hypothetical protein compare
Psyr_4691 +0.4 1.6 Metallophosphoesterase compare
Psyr_3790 +0.4 1.7 conserved hypothetical protein compare
Psyr_2763 +0.4 2.0 Protein of unknown function DUF159 compare
Psyr_1434 +0.4 1.0 Antibiotic biosynthesis monooxygenase compare
Psyr_2706 +0.4 2.0 gamma-glutamyl-gamma-aminobutyrate hydrolase compare
Psyr_3281 +0.4 1.1 Glycoside hydrolase, family 3, N-terminal compare
Psyr_3027 +0.4 1.9 Protein kinase:Leucine-rich repeat protein compare
Psyr_2495 +0.4 2.0 ABC transporter compare
Psyr_3399 +0.4 0.9 Endoribonuclease L-PSP compare
Psyr_0774 +0.4 1.3 monosaccharide ABC transporter membrane protein, CUT2 family compare
Psyr_1907 +0.4 1.2 GTP cyclohydrolase I compare
Psyr_4168 +0.4 1.9 K+-dependent Na+/Ca+ exchanger related-protein compare
Psyr_4268 +0.4 1.7 Amidase compare
Psyr_1455 +0.4 1.4 conserved hypothetical protein compare
Psyr_2243 +0.4 1.3 Endoribonuclease L-PSP compare
Psyr_1888 +0.4 1.6 CDS compare
Psyr_4692 +0.4 1.6 ABC transporter compare
Psyr_1460 +0.4 1.4 hypothetical protein compare
Psyr_2665 +0.4 2.1 Phenazine biosynthesis PhzC/PhzF protein compare
Psyr_0153 +0.4 1.2 conserved hypothetical protein compare
Psyr_2249 +0.4 1.0 Binding-protein-dependent transport systems inner membrane component compare
Psyr_4232 +0.4 2.2 Protein of unknown function DUF541 compare
Psyr_0996 +0.4 1.6 Alpha/beta hydrolase fold protein compare
Psyr_4175 +0.4 1.6 Transport-associated protein compare
Psyr_1761 +0.4 1.5 Hydroxyacylglutathione hydrolase compare
Psyr_2858 +0.4 2.2 2OG-Fe(II) oxygenase superfamily compare
Psyr_2713 +0.4 2.3 transcriptional regulator, LysR family compare
Psyr_3590 +0.4 1.3 conserved hypothetical protein compare
Psyr_1333 +0.4 1.9 UBA/THIF-type NAD/FAD binding fold protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas syringae pv. syringae B728a in stress experiments

For stress Lupeol across organisms