Experiment set9IT027 for Pseudomonas syringae pv. syringae B728a

Compare to:

KB with Nonanoic acid 10 mM

200 most important genes:

  gene name fitness t score description  
Psyr_0034 -3.4 -4.1 tryptophan synthase, beta chain compare
Psyr_4203 -3.3 -4.4 SsrA-binding protein compare
Psyr_4091 -2.5 -7.7 8-oxo-dGTPase compare
Psyr_4340 -2.5 -9.2 phosphomethylpyrimidine kinase, putative compare
Psyr_4687 -2.5 -9.7 biotin synthase compare
Psyr_0951 -2.4 -3.7 UBA/THIF-type NAD/FAD binding fold:MoeZ/MoeB compare
Psyr_0033 -2.4 -3.8 tryptophan synthase, alpha chain compare
Psyr_4341 -2.1 -7.4 thiamine-phosphate diphosphorylase compare
Psyr_4519 -2.1 -8.2 General substrate transporter:Major facilitator superfamily compare
Psyr_3419 -2.0 -5.4 4Fe-4S ferredoxin, iron-sulfur binding protein compare
Psyr_4683 -2.0 -5.0 dethiobiotin synthase compare
Psyr_1613 -2.0 -4.8 septum site-determining protein MinC compare
Psyr_0255 -1.9 -3.3 glutamate-cysteine ligase compare
Psyr_0835 -1.9 -6.1 transcriptional regulator, TraR/DksA family compare
Psyr_4684 -1.9 -3.2 biotin synthesis protein BioC compare
Psyr_0268 -1.8 -2.7 DSBA oxidoreductase compare
Psyr_0475 -1.7 -3.4 Protein of unknown function YGGT compare
Psyr_4740 -1.7 -5.6 thiazole-phosphate synthase compare
Psyr_1544 -1.7 -3.7 SirA-like protein compare
Psyr_4686 -1.6 -7.1 8-amino-7-oxononanoate synthase compare
Psyr_0383 -1.6 -1.4 Twin-arginine translocation protein TatB compare
Psyr_3290 -1.6 -4.4 3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase compare
Psyr_5132 -1.6 -4.6 Glucose-inhibited division protein A subfamily compare
Psyr_5135 -1.6 -0.8 Protein of unknown function DUF37 compare
Psyr_3193 -1.5 -2.6 Transcription factor jumonji, jmjC compare
Psyr_0535 -1.5 -2.6 toluene tolerance protein, putative compare
Psyr_5133 -1.5 -4.6 tRNA modification GTPase trmE compare
Psyr_1419 -1.5 -4.2 preQ(0) biosynthesis protein QueC compare
Psyr_0529 -1.5 -4.2 Glycosyl transferase, group 1 compare
Psyr_0454 -1.4 -5.9 adenosylmethionine-8-amino-7-oxononanoate aminotransferase apoenzyme compare
Psyr_1910 -1.4 -4.7 VacJ-like lipoprotein compare
Psyr_4580 -1.3 -2.2 anthranilate phosphoribosyltransferase compare
Psyr_0574 -1.3 -5.5 protease FtsH subunit HflK compare
Psyr_4140 -1.3 -2.1 Protein of unknown function DUF140 compare
Psyr_2897 -1.3 -6.1 regulatory protein, LuxR:Response regulator receiver compare
Psyr_3199 -1.3 -2.9 NADH dehydrogenase subunit D / NADH dehydrogenase subunit C compare
Psyr_0917 -1.3 -7.6 ABC-2 compare
Psyr_2312 -1.3 -1.5 Protein of unknown function DUF24 compare
Psyr_3698 -1.2 -3.6 Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal:Hpt compare
Psyr_4566 -1.2 -6.8 Peptidase M23B compare
Psyr_1408 -1.2 -2.0 Holliday junction endonuclease RuvC compare
Psyr_2088 -1.2 -2.2 2-methylaconitate cis-trans isomerase compare
Psyr_1747 -1.2 -3.3 ATP-dependent Clp protease proteolytic subunit ClpP compare
Psyr_1424 -1.1 -1.9 Peptidase S24, S26A and S26B compare
Psyr_0395 -1.1 -2.7 HslV component of HslUV peptidase, Threonine peptidase, MEROPS family T01B compare
Psyr_0936 -1.1 -7.8 Glycosyl transferase, group 1 compare
Psyr_3208 -1.1 -2.7 NADH dehydrogenase subunit M compare
Psyr_1663 -1.1 -3.5 phosphoribosylanthranilate isomerase compare
Psyr_0724 -1.1 -1.3 conserved hypothetical protein compare
Psyr_3055 -1.1 -1.6 Aminoglycoside phosphotransferase compare
Psyr_0184 -1.1 -3.2 Protein of unknown function DUF484 compare
Psyr_2854 -1.1 -4.2 conserved hypothetical protein compare
Psyr_1410 -1.1 -3.6 Holliday junction DNA helicase RuvB compare
Psyr_1941 -1.1 -1.8 ATP-binding region, ATPase-like:Histidine kinase compare
Psyr_3791 -1.1 -2.5 Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal compare
Psyr_1236 -1.1 -2.2 transcriptional regulator, BadM/Rrf2 family compare
Psyr_5067 -1.0 -4.3 conserved hypothetical protein compare
Psyr_0385 -1.0 -2.0 phosphoribosyl-ATP pyrophosphatase compare
Psyr_0549 -1.0 -1.9 Metallophosphoesterase compare
Psyr_0044 -1.0 -1.2 transferase hexapeptide repeat protein compare
Psyr_1270 -1.0 -1.4 conserved hypothetical protein compare
Psyr_3567 -1.0 -2.1 L-arginine ABC transporter ATP-binding protein / L-ornithine ABC transporter ATP-binding protein compare
Psyr_4362 -1.0 -2.5 Rare lipoprotein A compare
Psyr_0830 -1.0 -4.0 Poly(A) polymerase compare
Psyr_2927 -1.0 -2.4 transcriptional regulator, TetR family compare
Psyr_4634 -1.0 -1.3 Polynucleotide adenylyltransferase:Metal-dependent phosphohydrolase, HD subdomain protein compare
Psyr_2386 -1.0 -1.9 hypothetical protein compare
Psyr_1953 -1.0 -1.9 conserved hypothetical protein compare
Psyr_1816 -1.0 -2.2 transcriptional regulator, GntR family compare
Psyr_1121 -1.0 -1.7 6-phosphogluconolactonase compare
Psyr_4139 -1.0 -3.3 Mce4/Rv3499c/MTV023.06c protein compare
Psyr_3701 -1.0 -1.8 thioredoxin, putative compare
Psyr_0918 -1.0 -7.0 ABC transporter compare
Psyr_4627 -1.0 -2.3 dimethyladenosine transferase compare
Psyr_0826 -1.0 -4.9 glucose-6-phosphate isomerase compare
Psyr_3896 -1.0 -1.8 BFD-like [2Fe-2S]-binding region compare
Psyr_2543 -1.0 -2.2 conserved hypothetical protein compare
Psyr_0849 -1.0 -6.0 CDP-diacylglycerol--serine O-phosphatidyltransferase compare
Psyr_2348 -1.0 -2.1 hypothetical protein compare
Psyr_3677 -0.9 -2.5 Aminotransferase, class I and II compare
Psyr_2591 -0.9 -3.2 transport system permease protein compare
Psyr_3358 -0.9 -2.4 transmembrane pair compare
Psyr_4115 -0.9 -1.5 phosphoheptose isomerase compare
Psyr_3841 -0.9 -2.1 conserved hypothetical protein compare
Psyr_4512 -0.9 -4.3 putative phage-related protein compare
Psyr_4158 -0.9 -5.3 conserved hypothetical protein compare
Psyr_3837 -0.9 -1.4 conserved hypothetical protein compare
Psyr_3637 -0.9 -6.0 Glycosyl transferase, family 4 compare
Psyr_3755 -0.9 -1.3 conserved hypothetical protein compare
Psyr_2582 -0.9 -4.9 TonB-dependent siderophore receptor compare
Psyr_0531 -0.9 -2.6 LmbE-like protein compare
Psyr_1373 -0.9 -1.7 Peptidoglycan-binding LysM:Peptidase M23B compare
Psyr_0838 -0.9 -1.7 Rieske [2Fe-2S] region compare
Psyr_3665 -0.9 -2.6 conserved hypothetical protein compare
Psyr_2346 -0.9 -4.1 conserved hypothetical protein compare
Psyr_1198 -0.9 -1.8 type III secretion protein HrpF compare
Psyr_3904 -0.9 -3.7 Major intrinsic protein compare
Psyr_0827 -0.9 -3.2 pantothenate synthetase compare
Psyr_0571 -0.9 -2.4 tRNA isopentenyltransferase compare
Psyr_1670 -0.9 -2.6 Short-chain dehydrogenase/reductase SDR compare
Psyr_4194 -0.9 -3.3 DnaJ central region:Heat shock protein DnaJ, N-terminal:Chaperone DnaJ, C-terminal compare
Psyr_3433 -0.9 -2.3 Protein-glutamate methylesterase compare
Psyr_0579 -0.9 -5.7 RNAse R compare
Psyr_3008 -0.9 -3.1 Undecaprenyl-diphosphatase compare
Psyr_0576 -0.9 -2.3 ATP phosphoribosyltransferase regulatory subunit, putative compare
Psyr_2620 -0.9 -1.7 RND efflux system, outer membrane lipoprotein, NodT compare
Psyr_3425 -0.9 -2.3 Cyclic nucleotide-binding:Bacterial regulatory protein, Crp compare
Psyr_1268 -0.8 -3.0 extracellular solute-binding protein, family 3:SLT compare
Psyr_1483 -0.8 -2.6 hypothetical protein compare
Psyr_2593 -0.8 -1.8 ABC transporter compare
Psyr_0303 -0.8 -1.9 Ferredoxin:Oxidoreductase FAD/NAD(P)-binding protein compare
Psyr_0916 -0.8 -5.0 GDP-mannose 4,6-dehydratase compare
Psyr_0487 -0.8 -1.7 glutathione synthase compare
Psyr_3644 -0.8 -2.6 prephenate dehydrogenase compare
Psyr_4920 -0.8 -1.1 conserved hypothetical bacteriophage protein compare
Psyr_2980 -0.8 -2.3 UDP-glucose pyrophosphorylase compare
Psyr_3288 -0.8 -1.6 conserved hypothetical protein compare
Psyr_3020 -0.8 -1.5 precorrin-4 C11-methyltransferase compare
Psyr_3601 -0.8 -1.6 conserved hypothetical protein compare
Psyr_4860 -0.8 -1.0 Integrase, catalytic region compare
Psyr_4786 -0.8 -1.4 hypothetical protein compare
Psyr_3179 -0.8 -1.6 DNA translocase FtsK compare
Psyr_3427 -0.8 -2.3 conserved hypothetical protein compare
Psyr_1371 -0.8 -3.6 5'-nucleotidase / exopolyphosphatase / 3'-nucleotidase compare
Psyr_3174 -0.8 -2.5 uroporphyrinogen-III C-methyltransferase / precorrin-2 dehydrogenase compare
Psyr_RNA28 -0.8 -1.0 tRNA-Val compare
Psyr_2592 -0.8 -2.4 transport system permease protein compare
Psyr_5072 -0.8 -1.1 Cobalamin synthesis protein/P47K:Cobalamin synthesis protein/P47K compare
Psyr_4460 -0.8 -1.6 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II compare
Psyr_0914 -0.8 -5.0 Glycosyl transferase, group 1 compare
Psyr_2256 -0.8 -1.7 ABC transporter compare
Psyr_4134 -0.8 -3.2 ATP phosphoribosyltransferase (homohexameric) compare
Psyr_0920 -0.8 -6.4 Glycosyl transferase, group 1 compare
Psyr_0947 -0.8 -3.9 TPR repeat protein:TPR repeat protein compare
Psyr_0784 -0.8 -2.0 CheW-like protein compare
Psyr_3289 -0.8 -1.4 3-ketoacyl-CoA thiolase compare
Psyr_1372 -0.8 -2.3 Protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
Psyr_3842 -0.8 -2.5 SNF2-related:Helicase, C-terminal:Type III restriction enzyme, res subunit compare
Psyr_5050 -0.8 -2.4 transcriptional regulator, LysR family compare
Psyr_1251 -0.7 -2.4 quinoprotein compare
Psyr_4089 -0.7 -3.1 PAS compare
Psyr_4009 -0.7 -3.0 RND efflux system, outer membrane lipoprotein, NodT compare
Psyr_3015 -0.7 -4.2 cobaltochelatase CobN subunit compare
Psyr_4620 -0.7 -2.8 conserved hypothetical protein compare
Psyr_1079 -0.7 -1.7 conserved hypothetical protein compare
Psyr_3640 -0.7 -1.9 conserved hypothetical protein compare
Psyr_0982 -0.7 -1.9 conserved hypothetical protein compare
Psyr_0831 -0.7 -1.4 Two-component response regulator CbrB compare
Psyr_0528 -0.7 -1.5 Carbamoyltransferase compare
Psyr_3770 -0.7 -3.6 Propeptide, PepSY amd peptidase M4 compare
Psyr_0404 -0.7 -2.6 Fimbrial assembly compare
Psyr_2309 -0.7 -3.3 conserved hypothetical protein compare
Psyr_2743 -0.7 -1.7 Lysine exporter protein (LYSE/YGGA) compare
Psyr_3312 -0.7 -2.1 transcriptional regulator, LysR family compare
Psyr_2227 -0.7 -1.4 conserved hypothetical protein compare
Psyr_0259 -0.7 -1.5 Osmolarity sensor protein envZ compare
Psyr_3046 -0.7 -2.8 Protein of unknown function DUF330 compare
Psyr_3282 -0.7 -2.9 transcriptional regulator, TetR family compare
Psyr_2508 -0.7 -1.6 transcriptional regulator, IclR family compare
Psyr_1462 -0.7 -2.5 GCN5-related N-acetyltransferase compare
Psyr_3695 -0.7 -4.5 RelA/SpoT protein compare
Psyr_3420 -0.7 -1.5 conserved hypothetical protein compare
Psyr_5065 -0.7 -4.0 ATP-dependent DNA helicase UvrD compare
Psyr_1094 -0.7 -2.5 cold-shock DNA-binding protein family compare
Psyr_3808 -0.7 -1.2 hypothetical protein compare
Psyr_3459 -0.7 -1.4 Helix-turn-helix, Fis-type compare
Psyr_0219 -0.7 -4.3 phosphomannomutase compare
Psyr_4830 -0.7 -1.4 Binding-protein-dependent transport systems inner membrane component compare
Psyr_2609 -0.7 -2.7 Alpha/beta hydrolase fold protein compare
Psyr_3226 -0.7 -1.7 Transcriptional activator RfaH compare
Psyr_3241 -0.7 -2.2 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region:D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding protein compare
Psyr_2851 -0.7 -1.3 conserved hypothetical protein compare
Psyr_3007 -0.7 -1.1 Protein of unknown function DUF1294 compare
Psyr_2383 -0.7 -1.9 Protein of unknown function DUF72 compare
Psyr_2137 -0.6 -1.5 molybdopterin molybdochelatase compare
Psyr_2180 -0.6 -2.6 transcriptional regulator, LysR family compare
Psyr_3676 -0.6 -2.2 adenosylcobyric acid synthase (glutamine-hydrolysing) compare
Psyr_1127 -0.6 -1.2 Heavy metal response regulator compare
Psyr_3090 -0.6 -2.0 hypothetical protein compare
Psyr_1817 -0.6 -2.8 condensin subunit Smc compare
Psyr_4658 -0.6 -1.6 CDS compare
Psyr_0199 -0.6 -1.3 Glutathione-dependent formaldehyde-activating, GFA compare
Psyr_4822 -0.6 -1.0 Helix-turn-helix, Fis-type:Nitrogen regulation protein NR(I) compare
Psyr_2824 -0.6 -2.2 conserved hypothetical protein compare
Psyr_4682 -0.6 -1.4 conserved hypothetical protein compare
Psyr_3739 -0.6 -2.1 conserved hypothetical protein compare
Psyr_1528 -0.6 -2.0 Arc-like DNA binding protein compare
Psyr_1158 -0.6 -1.9 Gluconate transporter compare
Psyr_3023 -0.6 -1.6 conserved hypothetical protein compare
Psyr_1984 -0.6 -1.1 3-isopropylmalate dehydratase, small subunit compare
Psyr_2259 -0.6 -2.0 Beta-lactamase-like protein compare
Psyr_3581 -0.6 -2.2 ribosomal large subunit pseudouridine synthase B compare
Psyr_2171 -0.6 -1.7 HpcH/HpaI aldolase compare
Psyr_3450 -0.6 -2.4 Hpt compare
Psyr_1688 -0.6 -1.5 Protein of unknown function DUF1315 compare
Psyr_4941 -0.6 -1.7 NUDIX hydrolase compare
Psyr_3681 -0.6 -1.1 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
Psyr_1418 -0.6 -1.2 Radical SAM compare
Psyr_1368 -0.6 -3.5 Carboxylesterase compare
Psyr_4464 -0.6 -0.9 lipoprotein, putative compare


Specific Phenotypes

None in this experiment

For Pseudomonas syringae pv. syringae B728a in stress experiments

For stress Nonanoic acid across organisms