Experiment set9IT025 for Pseudomonas syringae pv. syringae B728a

Compare to:

KB with Avocatin B 10 mM

200 most important genes:

  gene name fitness t score description  
Psyr_0951 -5.1 -4.9 UBA/THIF-type NAD/FAD binding fold:MoeZ/MoeB compare
Psyr_4683 -4.3 -8.5 dethiobiotin synthase compare
Psyr_4009 -4.2 -9.4 RND efflux system, outer membrane lipoprotein, NodT compare
Psyr_1544 -4.2 -6.4 SirA-like protein compare
Psyr_4008 -4.1 -21.6 Hydrophobe/amphiphile efflux-1 HAE1 compare
Psyr_4340 -4.0 -12.4 phosphomethylpyrimidine kinase, putative compare
Psyr_0034 -3.9 -2.7 tryptophan synthase, beta chain compare
Psyr_5132 -3.7 -5.7 Glucose-inhibited division protein A subfamily compare
Psyr_0033 -3.7 -2.6 tryptophan synthase, alpha chain compare
Psyr_4740 -3.6 -6.9 thiazole-phosphate synthase compare
Psyr_4007 -3.5 -13.2 Secretion protein HlyD compare
Psyr_1373 -3.2 -5.7 Peptidoglycan-binding LysM:Peptidase M23B compare
Psyr_4687 -3.1 -12.2 biotin synthase compare
Psyr_2594 -3.1 -2.1 unknown conserved protein in bacilli compare
Psyr_4566 -3.0 -11.6 Peptidase M23B compare
Psyr_4686 -3.0 -7.9 8-amino-7-oxononanoate synthase compare
Psyr_0454 -2.9 -8.6 adenosylmethionine-8-amino-7-oxononanoate aminotransferase apoenzyme compare
Psyr_4341 -2.9 -7.8 thiamine-phosphate diphosphorylase compare
Psyr_4115 -2.8 -4.5 phosphoheptose isomerase compare
Psyr_4091 -2.7 -4.0 8-oxo-dGTPase compare
Psyr_0531 -2.3 -3.4 LmbE-like protein compare
Psyr_3419 -2.2 -5.5 4Fe-4S ferredoxin, iron-sulfur binding protein compare
Psyr_2593 -2.2 -4.3 ABC transporter compare
Psyr_1663 -2.2 -5.7 phosphoribosylanthranilate isomerase compare
Psyr_0383 -2.1 -1.4 Twin-arginine translocation protein TatB compare
Psyr_3193 -2.1 -4.6 Transcription factor jumonji, jmjC compare
Psyr_4627 -2.1 -2.9 dimethyladenosine transferase compare
Psyr_1751 -2.1 -5.9 PpiC-type peptidyl-prolyl cis-trans isomerase compare
Psyr_1613 -2.0 -7.5 septum site-determining protein MinC compare
Psyr_4580 -2.0 -4.5 anthranilate phosphoribosyltransferase compare
Psyr_0574 -2.0 -7.0 protease FtsH subunit HflK compare
Psyr_0571 -2.0 -5.6 tRNA isopentenyltransferase compare
Psyr_4519 -2.0 -5.4 General substrate transporter:Major facilitator superfamily compare
Psyr_4203 -2.0 -2.7 SsrA-binding protein compare
Psyr_3208 -1.9 -3.1 NADH dehydrogenase subunit M compare
Psyr_0475 -1.8 -4.5 Protein of unknown function YGGT compare
Psyr_1419 -1.8 -4.6 preQ(0) biosynthesis protein QueC compare
Psyr_3886 -1.8 -2.3 methionyl-tRNA synthetase compare
Psyr_2591 -1.7 -6.2 transport system permease protein compare
Psyr_1717 -1.7 -3.1 TPR repeat:von Willebrand factor, type A compare
Psyr_2582 -1.7 -8.9 TonB-dependent siderophore receptor compare
Psyr_5135 -1.7 -1.0 Protein of unknown function DUF37 compare
Psyr_0579 -1.6 -10.3 RNAse R compare
Psyr_2592 -1.6 -5.5 transport system permease protein compare
Psyr_3759 -1.6 -8.9 conserved hypothetical protein compare
Psyr_0528 -1.6 -3.7 Carbamoyltransferase compare
Psyr_4622 -1.6 -3.8 Nucleotidyl transferase compare
Psyr_3427 -1.6 -3.2 conserved hypothetical protein compare
Psyr_4991 -1.6 -3.1 hypothetical protein compare
Psyr_4424 -1.6 -7.1 Propeptide, PepSY amd peptidase M4:PepSY-associated TM helix compare
Psyr_0255 -1.5 -2.5 glutamate-cysteine ligase compare
Psyr_0487 -1.5 -2.9 glutathione synthase compare
Psyr_3954 -1.5 -5.1 GTP-binding protein LepA compare
Psyr_0835 -1.5 -6.3 transcriptional regulator, TraR/DksA family compare
Psyr_4362 -1.5 -2.3 Rare lipoprotein A compare
Psyr_4684 -1.5 -3.5 biotin synthesis protein BioC compare
Psyr_1371 -1.5 -7.2 5'-nucleotidase / exopolyphosphatase / 3'-nucleotidase compare
Psyr_4408 -1.4 -7.0 Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal:Histidine kinase:Histidine kinase compare
Psyr_2973 -1.4 -2.7 Glyoxalase I compare
Psyr_4774 -1.4 -1.9 Hypothetical protein compare
Psyr_1268 -1.4 -5.1 extracellular solute-binding protein, family 3:SLT compare
Psyr_1864 -1.4 -3.6 spermidine synthase compare
Psyr_3581 -1.4 -6.4 ribosomal large subunit pseudouridine synthase B compare
Psyr_2590 -1.4 -2.2 Periplasmic binding protein compare
Psyr_2854 -1.4 -5.3 conserved hypothetical protein compare
Psyr_3289 -1.4 -2.9 3-ketoacyl-CoA thiolase compare
Psyr_3179 -1.3 -2.6 DNA translocase FtsK compare
Psyr_0268 -1.3 -2.3 DSBA oxidoreductase compare
Psyr_4512 -1.3 -6.0 putative phage-related protein compare
Psyr_3904 -1.3 -5.5 Major intrinsic protein compare
Psyr_5133 -1.3 -4.3 tRNA modification GTPase trmE compare
Psyr_0215 -1.2 -7.9 Exodeoxyribonuclease III xth compare
Psyr_0976 -1.2 -4.4 Malate:quinone-oxidoreductase compare
Psyr_1667 -1.2 -5.0 Colicin V production protein compare
Psyr_4194 -1.2 -3.4 DnaJ central region:Heat shock protein DnaJ, N-terminal:Chaperone DnaJ, C-terminal compare
Psyr_3681 -1.2 -2.5 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
Psyr_5050 -1.2 -3.1 transcriptional regulator, LysR family compare
Psyr_3045 -1.2 -5.5 PqiB family protein compare
Psyr_3760 -1.2 -4.3 VacJ-like lipoprotein compare
Psyr_3854 -1.2 -1.2 OmpA/MotB compare
Psyr_0735 -1.2 -2.4 Peptidase S24, S26A and S26B compare
Psyr_0529 -1.2 -3.2 Glycosyl transferase, group 1 compare
Psyr_0580 -1.2 -3.0 23S rRNA Gm-2251 2'-O-methyltransferase compare
Psyr_0575 -1.1 -2.4 protease FtsH subunit HflC compare
Psyr_3290 -1.1 -2.4 3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase compare
Psyr_4623 -1.1 -7.3 Aminoglycoside phosphotransferase compare
Psyr_2927 -1.1 -1.8 transcriptional regulator, TetR family compare
Psyr_3358 -1.1 -2.9 transmembrane pair compare
Psyr_3691 -1.1 -4.2 conserved hypothetical protein compare
Psyr_4078 -1.1 -7.1 AmpG-related permease compare
Psyr_0393 -1.1 -3.4 Protein of unknown function DUF971 compare
Psyr_2757 -1.1 -1.7 Binding-protein-dependent transport systems inner membrane component compare
Psyr_2312 -1.1 -1.4 Protein of unknown function DUF24 compare
Psyr_RNA28 -1.1 -1.7 tRNA-Val compare
Psyr_4893 -1.1 -1.5 imidazole glycerol phosphate synthase subunit hisF compare
Psyr_0917 -1.0 -7.1 ABC-2 compare
Psyr_0941 -1.0 -4.9 Conserved hypothetical protein 92 compare
Psyr_0524 -1.0 -2.4 Lipopolysaccharide kinase compare
Psyr_0174 -1.0 -5.6 Sodium:dicarboxylate symporter compare
Psyr_3046 -1.0 -3.7 Protein of unknown function DUF330 compare
Psyr_5065 -1.0 -5.9 ATP-dependent DNA helicase UvrD compare
Psyr_3701 -1.0 -1.8 thioredoxin, putative compare
Psyr_4089 -1.0 -4.9 PAS compare
Psyr_3044 -1.0 -3.6 Paraquat-inducible protein A compare
Psyr_0830 -1.0 -4.2 Poly(A) polymerase compare
Psyr_2330 -1.0 -3.8 FAD dependent oxidoreductase compare
Psyr_3282 -1.0 -4.4 transcriptional regulator, TetR family compare
Psyr_4093 -1.0 -3.9 glutamate N-acetyltransferase compare
Psyr_1688 -1.0 -1.7 Protein of unknown function DUF1315 compare
Psyr_3020 -1.0 -1.5 precorrin-4 C11-methyltransferase compare
Psyr_1410 -1.0 -3.2 Holliday junction DNA helicase RuvB compare
Psyr_4754 -1.0 -1.1 16S rRNA m(2)G-966 methyltransferase compare
Psyr_2383 -1.0 -2.3 Protein of unknown function DUF72 compare
Psyr_1910 -1.0 -3.6 VacJ-like lipoprotein compare
Psyr_3450 -1.0 -4.0 Hpt compare
Psyr_1350 -1.0 -3.5 site-2 protease, Metallo peptidase, MEROPS family M50B compare
Psyr_3425 -1.0 -2.5 Cyclic nucleotide-binding:Bacterial regulatory protein, Crp compare
Psyr_1009 -1.0 -2.6 Peptidylprolyl isomerase, FKBP-type compare
Psyr_1614 -1.0 -0.6 lipid A biosynthesis acyltransferase compare
Psyr_3958 -0.9 -5.9 RNA polymerase, sigma-24 subunit, RpoE compare
Psyr_2095 -0.9 -2.9 Conserved TM helix compare
Psyr_2807 -0.9 -1.4 NinB compare
Psyr_3947 -0.9 -2.5 Methyltransferase, putative compare
Psyr_3199 -0.9 -2.3 NADH dehydrogenase subunit D / NADH dehydrogenase subunit C compare
Psyr_2150 -0.9 -2.2 protein of unknown function DUF903 compare
Psyr_1372 -0.9 -3.7 Protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
Psyr_3842 -0.9 -4.1 SNF2-related:Helicase, C-terminal:Type III restriction enzyme, res subunit compare
Psyr_1721 -0.9 -3.6 moxR protein, putative compare
Psyr_4464 -0.9 -1.3 lipoprotein, putative compare
Psyr_3055 -0.9 -1.4 Aminoglycoside phosphotransferase compare
Psyr_3889 -0.9 -2.7 conserved hypothetical protein compare
Psyr_0219 -0.9 -6.1 phosphomannomutase compare
Psyr_0918 -0.9 -6.9 ABC transporter compare
Psyr_1748 -0.9 -3.0 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Psyr_0081 -0.9 -1.4 ABC transporter compare
Psyr_4183 -0.9 -1.1 protein translocase subunit secG compare
Psyr_4567 -0.9 -2.9 Protein of unknown function UPF0075 compare
Psyr_3521 -0.9 -2.3 transcriptional regulator, LysR family compare
Psyr_2143 -0.9 -1.7 delta1-piperideine 2-carboxylate reductase compare
Psyr_0772 -0.9 -2.4 Protein of unknown function DUF1355 compare
Psyr_0303 -0.9 -1.9 Ferredoxin:Oxidoreductase FAD/NAD(P)-binding protein compare
Psyr_1747 -0.9 -3.2 ATP-dependent Clp protease proteolytic subunit ClpP compare
Psyr_0263 -0.8 -3.2 Two-component response regulator AlgB compare
Psyr_0385 -0.8 -2.4 phosphoribosyl-ATP pyrophosphatase compare
Psyr_4933 -0.8 -4.4 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase compare
Psyr_4581 -0.8 -1.4 anthranilate synthase, component II compare
Psyr_0386 -0.8 -2.9 phosphoribosyl-AMP cyclohydrolase compare
Psyr_3676 -0.8 -2.8 adenosylcobyric acid synthase (glutamine-hydrolysing) compare
Psyr_3776 -0.8 -2.7 Cytosine deaminase compare
Psyr_3418 -0.8 -3.3 PilT protein, N-terminal compare
Psyr_4133 -0.8 -4.9 histidinol dehydrogenase compare
Psyr_4660 -0.8 -3.5 Formate/nitrite transporter compare
Psyr_1588 -0.8 -1.9 Putative exonuclease, RdgC compare
Psyr_4750 -0.8 -1.3 cell division ATP-binding protein FtsE compare
Psyr_4380 -0.8 -1.4 translation initiation factor 1 (eIF-1/SUI1) compare
Psyr_2137 -0.8 -2.0 molybdopterin molybdochelatase compare
Psyr_2980 -0.8 -2.3 UDP-glucose pyrophosphorylase compare
Psyr_1236 -0.8 -2.7 transcriptional regulator, BadM/Rrf2 family compare
Psyr_0549 -0.8 -1.7 Metallophosphoesterase compare
Psyr_3281 -0.8 -2.0 Glycoside hydrolase, family 3, N-terminal compare
Psyr_3796 -0.8 -2.8 transcriptional regulator, LysR family compare
Psyr_2227 -0.8 -1.8 conserved hypothetical protein compare
Psyr_4278 -0.8 -1.1 regulatory protein, LuxR compare
Psyr_0347 -0.8 -3.3 hypothetical protein compare
Psyr_1765 -0.8 -2.6 GCN5-related N-acetyltransferase compare
Psyr_1483 -0.8 -3.5 hypothetical protein compare
Psyr_3043 -0.8 -2.5 Paraquat-inducible protein A compare
Psyr_1455 -0.8 -2.2 conserved hypothetical protein compare
Psyr_1017 -0.8 -1.4 type III effector HopJ1 compare
Psyr_4151 -0.8 -1.2 Phosphocarrier HPr protein compare
Psyr_3626 -0.8 -2.1 transcriptional regulator, MarR family compare
Psyr_0525 -0.8 -2.2 Lipopolysaccharide kinase compare
Psyr_2538 -0.7 -1.6 Binding-protein-dependent transport systems inner membrane component compare
Psyr_0044 -0.7 -1.5 transferase hexapeptide repeat protein compare
Psyr_0916 -0.7 -5.2 GDP-mannose 4,6-dehydratase compare
Psyr_2092 -0.7 -2.4 Protein of unknown function 1935 compare
Psyr_2098 -0.7 -3.1 uroporphyrinogen-III C-methyltransferase compare
Psyr_3015 -0.7 -3.6 cobaltochelatase CobN subunit compare
Psyr_1624 -0.7 -2.3 transcriptional regulator, MarR family compare
Psyr_0838 -0.7 -1.3 Rieske [2Fe-2S] region compare
Psyr_2540 -0.7 -1.4 Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal compare
Psyr_2636 -0.7 -2.8 TspO/MBR-related protein compare
Psyr_2982 -0.7 -1.5 conserved hypothetical protein compare
Psyr_4134 -0.7 -3.8 ATP phosphoribosyltransferase (homohexameric) compare
Psyr_4418 -0.7 -1.5 Precorrin-6Y C5,15-methyltransferase (decarboxylating) compare
Psyr_3357 -0.7 -1.9 transcriptional regulator, LysR family compare
Psyr_0811 -0.7 -3.5 Integral membrane protein TerC compare
Psyr_2855 -0.7 -1.8 methionine synthase (B12-independent) compare
Psyr_2285 -0.7 -0.9 Twin-arginine translocation pathway signal compare
Psyr_3986 -0.7 -2.9 GCN5-related N-acetyltransferase compare
Psyr_1094 -0.7 -2.7 cold-shock DNA-binding protein family compare
Psyr_4460 -0.7 -1.3 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II compare
Psyr_0250 -0.7 -2.1 conserved hypothetical protein compare
Psyr_2266 -0.7 -2.0 Binding-protein-dependent transport systems inner membrane component compare
Psyr_0565 -0.7 -3.5 Protein of unknown function UPF0126 compare
Psyr_1719 -0.7 -1.2 conserved hypothetical protein compare
Psyr_4138 -0.7 -2.3 Toluene tolerance compare
Psyr_2566 -0.7 -2.1 dihydroxyacetone kinase DhaK subunit compare
Psyr_5067 -0.7 -3.3 conserved hypothetical protein compare
Psyr_3677 -0.7 -1.9 Aminotransferase, class I and II compare


Specific Phenotypes

For 4 genes in this experiment

For stress Avocatin B in Pseudomonas syringae pv. syringae B728a

For stress Avocatin B across organisms