Experiment set9IT022 for Synechococcus elongatus PCC 7942
Time 0 for outgrown library 2.0
Group: lib 6.2 testMedia: BG11, pH=7.5
Culturing: SynE_ML6.2, 100ml in 250 ml Flask, Aerobic, at 30 (C), shaken=0 rpm, (Solid)
By: Ben Rubin on 8/21/2015
Media components: 1.5 g/L Sodium nitrate, 0.04 g/L Potassium phosphate dibasic, 0.075 g/L Magnesium Sulfate Heptahydrate, 0.036 g/L Calcium chloride dihydrate, 0.006 g/L Citric Acid, 0.006 g/L Ferric ammonium citrate, 0.001 g/L EDTA (disodium salt), 0.02 g/L Sodium carbonate, Trace metal mix A5 (0.00286 g/L Boric Acid, 0.00181 g/L Manganese (II) chloride tetrahydrate, 0.000222 g/L Zinc sulfate heptahydrate, 0.00039 g/L Sodium Molybdate Dihydrate, 7.9e-05 g/L Copper (II) sulfate pentahydrate, 0.0494 mg/L Cobalt(II) nitrate hexahydrate)
Specific Phenotypes
For 14 genes in this experiment
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| Carotenoids | 1 |
| De Novo Purine Biosynthesis | 1 |
| Phycobilisome | 1 |
| Streptococcus pyogenes recombinatorial zone | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Fatty acid metabolism
- Purine metabolism
- Puromycin biosynthesis
- Valine, leucine and isoleucine degradation
- Geraniol degradation
- Nucleotide sugars metabolism
- alpha-Linolenic acid metabolism
- 1- and 2-Methylnaphthalene degradation
- Benzoate degradation via CoA ligation
- Trinitrotoluene degradation
- One carbon pool by folate
- Porphyrin and chlorophyll metabolism
- Brassinosteroid biosynthesis
- Carotenoid biosynthesis - General
- Caprolactam degradation
- Alkaloid biosynthesis I
- Insect hormone biosynthesis
- Biosynthesis of terpenoids and steroids
- Biosynthesis of plant hormones
MetaCyc Pathways
Pathways that contain genes with specific phenotypes: