Experiment set9IT020 for Synechococcus elongatus PCC 7942

Compare to:

No grazer plate rep 2

Group: grazers
Media: BG11, pH=7.5
Culturing: SynE_ML6, Petri dish, Aerobic, at 30 (C), shaken=0 rpm, (Solid)
By: Ben Rubin on 8/21/2015
Media components: 1.5 g/L Sodium nitrate, 0.04 g/L Potassium phosphate dibasic, 0.075 g/L Magnesium Sulfate Heptahydrate, 0.036 g/L Calcium chloride dihydrate, 0.006 g/L Citric Acid, 0.006 g/L Ferric ammonium citrate, 0.001 g/L EDTA (disodium salt), 0.02 g/L Sodium carbonate, Trace metal mix A5 (0.00286 g/L Boric Acid, 0.00181 g/L Manganese (II) chloride tetrahydrate, 0.000222 g/L Zinc sulfate heptahydrate, 0.00039 g/L Sodium Molybdate Dihydrate, 7.9e-05 g/L Copper (II) sulfate pentahydrate, 0.0494 mg/L Cobalt(II) nitrate hexahydrate)

Specific Phenotypes

For 13 genes in this experiment

SEED Subsystems

Subsystem #Specific
DNA Repair Base Excision 1
DNA repair, bacterial RecFOR pathway 1
High affinity phosphate transporter and control of PHO regulon 1
Phosphate metabolism 1
Purine conversions 1
Streptococcal Mga Regulon 1
Two-component regulatory systems in Campylobacter 1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway #Steps #Present #Specific
pyrimidine nucleobases salvage I 1 1 1
pyrimidine nucleobases salvage II 2 2 1
sucrose biosynthesis III 3 2 1
adenine and adenosine salvage V 3 1 1
purine deoxyribonucleosides degradation II 3 1 1
superpathway of pyrimidine nucleobases salvage 4 4 1
purine deoxyribonucleosides degradation I 4 1 1
adenine and adenosine salvage III 4 1 1
adenosine nucleotides degradation II 5 2 1
purine ribonucleosides degradation 6 1 1
superpathway of purine deoxyribonucleosides degradation 7 2 1
sucrose biosynthesis II 8 6 1
sucrose biosynthesis I (from photosynthesis) 9 7 1
superpathway of pyrimidine ribonucleosides salvage 10 7 1
purine nucleotides degradation II (aerobic) 11 5 1