Experiment set9IT018 for Bifidobacterium breve UCC2003

Compare to:

diet=HighFatHighSugar; sample=FecalPellet; mouse13; day1

200 most important genes:

  gene name fitness t score description  
BBR_RS15130 -8.3 -3.1 metal-sulfur cluster assembly factor compare
BBR_RS15670 -7.5 -4.3 adenine phosphoribosyltransferase compare
BBR_RS16540 -6.9 -4.8 XRE family transcriptional regulator compare
BBR_RS16845 -6.5 -2.8 bifunctional folylpolyglutamate synthase/dihydrofolate synthase compare
BBR_RS20200 -6.4 -32.8 alpha-galactosidase compare
BBR_RS19355 -6.2 -2.3 tRNA-Gly compare
BBR_RS14540 -6.1 -4.2 Na+/H+ antiporter NhaA compare
BBR_RS18045 -6.1 -1.3 undecaprenyl/decaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase compare
BBR_RS10285 -6.1 -2.2 membrane protein compare
BBR_RS21170 -6.0 -4.2 membrane protein insertion efficiency factor YidD compare
BBR_RS16255 -6.0 -3.6 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE compare
BBR_RS13375 -5.9 -5.8 phosphoribosylformylglycinamidine cyclo-ligase compare
BBR_RS12880 -5.9 -9.1 Crp/Fnr family transcriptional regulator compare
BBR_RS16300 -5.7 -6.6 pyridoxamine 5'-phosphate oxidase family protein compare
BBR_RS10720 -5.7 -18.0 PDZ domain-containing protein compare
BBR_RS20245 -5.7 -32.0 cation-translocating P-type ATPase compare
BBR_RS18565 -5.6 -2.1 CHAP domain-containing protein compare
BBR_RS14215 -5.6 -3.2 peptidase compare
BBR_RS12545 -5.6 -3.9 DUF4012 domain-containing protein compare
BBR_RS19760 -5.5 -2.4 polysaccharide ABC transporter ATPase compare
BBR_RS17155 -5.5 -1.2 cell division protein SepF compare
BBR_RS12605 -5.5 -3.2 glycosyltransferase family 2 protein compare
BBR_RS13820 -5.4 -1.2 ATP-binding protein compare
BBR_RS13490 -5.4 -1.2 30S ribosomal protein S7 compare
BBR_RS12910 -5.3 -13.6 galactokinase compare
BBR_RS13805 -5.3 -1.9 hypothetical protein compare
BBR_RS15050 -5.2 -2.2 DUF948 domain-containing protein compare
BBR_RS13370 -5.1 -2.9 phosphoribosylamine--glycine ligase compare
BBR_RS16955 -5.1 -2.7 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
BBR_RS17455 -5.0 -8.1 DNA-binding response regulator compare
BBR_RS18690 -5.0 -10.1 diacylglycerol kinase compare
BBR_RS10755 -4.9 -3.4 adenylosuccinate synthase compare
BBR_RS16425 -4.8 -2.7 DUF3071 domain-containing protein compare
BBR_RS16640 -4.8 -2.5 ABC transporter permease compare
BBR_RS11675 -4.8 -2.1 hypothetical protein compare
BBR_RS15440 -4.8 -3.3 orotidine-5'-phosphate decarboxylase compare
BBR_RS15085 -4.7 -1.8 3-dehydroquinate synthase compare
BBR_RS11510 -4.7 -1.4 signal recognition particle-docking protein FtsY compare
BBR_RS17640 -4.7 -2.4 DNA-directed RNA polymerase subunit omega compare
BBR_RS13455 -4.6 -3.2 formate-dependent phosphoribosylglycinamide formyltransferase compare
BBR_RS12045 -4.6 -4.9 hypothetical protein compare
BBR_RS13445 -4.6 -11.9 phosphoribosylformylglycinamidine synthase compare
BBR_RS15520 -4.5 -3.1 shikimate 5-dehydrogenase compare
BBR_RS13450 -4.5 -2.7 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
BBR_RS13380 -4.4 -8.3 amidophosphoribosyltransferase compare
BBR_RS11590 -4.4 -1.0 30S ribosomal protein S18 compare
BBR_RS19640 -4.4 -0.9 phosphoesterase compare
BBR_RS15080 -4.4 -2.5 chorismate synthase compare
BBR_RS21015 -4.3 -1.3 hypothetical protein compare
BBR_RS17775 -4.3 -4.9 LacI family DNA-binding transcriptional regulator compare
BBR_RS15455 -4.3 -2.1 orotate phosphoribosyltransferase compare
BBR_RS19375 -4.3 -1.8 acyl-CoA carboxylase subunit beta compare
BBR_RS20465 -4.2 -6.5 chromosome partitioning protein compare
BBR_RS16635 -4.2 -2.4 ABC transporter ATP-binding protein compare
BBR_RS16750 -4.2 -2.9 ParA family protein compare
BBR_RS14265 -4.1 -6.7 Solute-binding protein of ABC transporter system for metals compare
BBR_RS13300 -4.1 -1.5 5-(carboxyamino)imidazole ribonucleotide synthase compare
BBR_RS16530 -4.1 -5.3 recombinase RecA compare
BBR_RS15650 -4.1 -2.5 Holliday junction resolvase compare
BBR_RS13910 -4.1 -1.5 arginine repressor compare
BBR_RS19070 -4.0 -1.2 50S ribosomal protein L33 compare
BBR_RS18175 -4.0 -1.2 GTP cyclohydrolase I FolE compare
BBR_RS13125 -4.0 -1.2 ABC transporter permease compare
BBR_RS14370 -4.0 -2.7 3-phosphoshikimate 1-carboxyvinyltransferase compare
BBR_RS13770 -3.9 -3.3 DNA repair protein RecO compare
BBR_RS15425 -3.9 -2.4 aspartate carbamoyltransferase compare
BBR_RS11470 -3.9 -1.2 6-phosphogluconolactonase compare
BBR_RS10615 -3.9 -3.1 FtsW/RodA/SpoVE family cell cycle protein compare
BBR_RS20195 -3.9 -11.9 ROK family transcriptional regulator compare
BBR_RS16240 -3.8 -3.9 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD compare
BBR_RS20435 -3.8 -0.8 CCA tRNA nucleotidyltransferase compare
BBR_RS15805 -3.8 -5.9 prolipoprotein diacylglyceryl transferase compare
BBR_RS14220 -3.8 -4.8 phosphomannomutase compare
BBR_RS18735 -3.8 -7.9 hypothetical protein compare
BBR_RS10620 -3.8 -2.6 phosphoprotein phosphatase compare
BBR_RS19450 -3.7 -1.4 GTPase ObgE compare
BBR_RS18215 -3.7 -8.0 AI-2E family transporter compare
BBR_RS10900 -3.7 -2.1 molecular chaperone DnaK compare
BBR_RS20480 -3.7 -0.8 membrane protein compare
BBR_RS19390 -3.6 -1.7 hypothetical protein compare
BBR_RS10565 -3.6 -16.7 glycogen/starch/alpha-glucan family phosphorylase compare
BBR_RS13630 -3.5 -5.9 carbamoyl-phosphate synthase small subunit compare
BBR_RS15090 -3.5 -1.1 type II 3-dehydroquinate dehydratase compare
BBR_RS14230 -3.5 -5.9 HAMP domain-containing histidine kinase compare
BBR_RS21165 -3.5 -1.5 hypothetical protein compare
BBR_RS14260 -3.5 -1.1 ABC transporter ATP-binding protein compare
BBR_RS19645 -3.4 -10.6 RNA degradosome polyphosphate kinase compare
BBR_RS18955 -3.4 -8.7 bifunctional acetaldehyde-CoA/alcohol dehydrogenase compare
BBR_RS20455 -3.4 -7.3 thioredoxin-disulfide reductase compare
BBR_RS16245 -3.4 -2.8 ribosomal-protein-alanine N-acetyltransferase compare
BBR_RS12385 -3.3 -8.4 oxidoreductase compare
BBR_RS16905 -3.3 -4.6 hypothetical protein compare
BBR_RS15070 -3.3 -2.4 endolytic transglycosylase MltG compare
BBR_RS19190 -3.3 -9.2 3-deoxy-7-phosphoheptulonate synthase compare
BBR_RS16965 -3.2 -2.2 ATP-dependent DNA helicase compare
BBR_RS20190 -3.2 -10.4 Raffinose-binding protein compare
BBR_RS12610 -3.2 -3.8 capsular polysaccharide biosynthesis protein compare
BBR_RS15055 -3.2 -1.7 hypothetical protein compare
BBR_RS17135 -3.1 -2.1 RluA family pseudouridine synthase compare
BBR_RS10660 -3.1 -10.9 esterase compare
BBR_RS17500 -3.1 -4.8 hypothetical protein compare
BBR_RS16610 -3.1 -2.7 hypothetical protein compare
BBR_RS20180 -3.0 -8.9 carbohydrate ABC transporter permease compare
BBR_RS19160 -3.0 -0.9 phosphate ABC transporter permease subunit PstC compare
BBR_RS20185 -3.0 -9.2 sugar ABC transporter permease compare
BBR_RS13635 -3.0 -7.9 carbamoyl-phosphate synthase large subunit compare
BBR_RS16650 -2.9 -5.1 ABC transporter substrate-binding protein compare
BBR_RS17510 -2.9 -4.3 VWA domain-containing protein compare
BBR_RS18035 -2.9 -1.8 oligoribonuclease compare
BBR_RS11245 -2.9 -8.9 MFS transporter compare
BBR_RS18990 -2.9 -1.1 AbrB family transcriptional regulator compare
BBR_RS13040 -2.9 -1.9 CHAP domain-containing protein compare
BBR_RS13640 -2.9 -4.3 orotidine-5'-phosphate decarboxylase compare
BBR_RS15435 -2.8 -2.7 dihydroorotase compare
BBR_RS12980 -2.8 -9.4 ATP-dependent DNA helicase UvrD/REP family compare
BBR_RS10980 -2.8 -6.4 TetR/AcrR family transcriptional regulator compare
BBR_RS20460 -2.8 -3.8 chromosome partitioning protein ParB compare
BBR_RS16960 -2.7 -1.7 transcriptional regulator MraZ compare
BBR_RS10460 -2.7 -8.3 peroxiredoxin compare
BBR_RS19435 -2.7 -2.3 pyridoxal phosphate-dependent aminotransferase compare
BBR_RS15660 -2.7 -2.7 Holliday junction branch migration DNA helicase RuvB compare
BBR_RS12900 -2.7 -1.6 DeoR/GlpR transcriptional regulator compare
BBR_RS13905 -2.7 -3.5 ornithine carbamoyltransferase compare
BBR_RS15655 -2.6 -3.5 Holliday junction branch migration protein RuvA compare
BBR_RS12235 -2.6 -0.6 hypothetical protein compare
BBR_RS12375 -2.6 -1.0 pantetheine-phosphate adenylyltransferase compare
BBR_RS11415 -2.5 -6.7 amino acid ABC transporter substrate-binding protein compare
BBR_RS16820 -2.5 -1.6 RNA polymerase sigma factor RpoE compare
BBR_RS20420 -2.5 -6.3 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
BBR_RS10890 -2.5 -7.4 LacI family transcriptional regulator compare
BBR_RS18745 -2.4 -0.7 bifunctional riboflavin kinase/FMN adenylyltransferase compare
BBR_RS19125 -2.4 -6.6 hypothetical protein compare
BBR_RS10570 -2.4 -3.5 hypothetical protein compare
BBR_RS18795 -2.4 -2.4 tRNA pseudouridine(38-40) synthase TruA compare
BBR_RS12370 -2.4 -0.7 cell division protein compare
BBR_RS11540 -2.3 -1.1 DUF1727 domain-containing protein compare
BBR_RS18180 -2.3 -4.5 ATP-dependent zinc metalloprotease FtsH compare
BBR_RS15550 -2.3 -1.8 L-lactate dehydrogenase compare
BBR_RS14210 -2.3 -1.1 hypothetical protein compare
BBR_RS16080 -2.3 -1.2 DUF1287 domain-containing protein compare
BBR_RS12975 -2.2 -7.4 ATP-dependent DNA helicase UvrD/REP family compare
BBR_RS14205 -2.2 -1.5 hypothetical protein compare
BBR_RS12310 -2.2 -1.2 signal recognition particle protein compare
BBR_RS12785 -2.2 -2.2 transcriptional regulator compare
BBR_RS16430 -2.2 -1.9 nucleotide pyrophosphatase compare
BBR_RS16755 -2.2 -2.3 site-specific tyrosine recombinase XerD compare
BBR_RS11640 -2.2 -1.3 hypothetical protein compare
BBR_RS19260 -2.2 -7.7 hypothetical protein compare
BBR_RS11410 -2.2 -7.5 iron permease compare
BBR_RS10465 -2.1 -10.0 FAD-dependent oxidoreductase compare
BBR_RS10445 -2.1 -8.7 HlyC/CorC family transporter compare
BBR_RS13030 -2.1 -1.4 cell division ATP-binding protein FtsE compare
BBR_RS11135 -2.0 -6.6 dihydrodipicolinate synthase family protein compare
BBR_RS19120 -2.0 -8.0 helicase compare
BBR_RS11770 -2.0 -2.5 chorismate mutase compare
BBR_RS10580 -2.0 -1.8 septation inhibitor protein compare
BBR_RS16285 -2.0 -3.2 magnesium transporter CorA family protein compare
BBR_RS16675 -2.0 -2.1 prephenate dehydrogenase/arogenate dehydrogenase family protein compare
BBR_RS14380 -2.0 -5.6 phosphate acetyltransferase compare
BBR_RS19155 -1.9 -3.6 phosphate ABC transporter, permease protein PstA compare
BBR_RS16490 -1.9 -2.2 polyprenyl synthase compare
BBR_RS10265 -1.9 -4.8 DNA replication and repair protein RecF compare
BBR_RS20795 -1.9 -1.0 cystathionine gamma-lyase compare
BBR_RS13305 -1.9 -1.8 transcriptional repressor compare
BBR_RS14475 -1.9 -4.2 formate C-acetyltransferase compare
BBR_RS11660 -1.9 -8.2 YHS domain-containing protein compare
BBR_RS17650 -1.8 -1.1 cell filamentation protein Fic compare
BBR_RS12450 -1.8 -1.1 signal peptidase I compare
BBR_RS10780 -1.8 -7.0 sucrose phosphorylase compare
BBR_RS18345 -1.8 -2.2 hypothetical protein compare
BBR_RS18700 -1.8 -3.7 PTS beta-glucoside transporter subunit EIIBCA compare
BBR_RS10905 -1.8 -2.0 nucleotide exchange factor GrpE compare
BBR_RS15915 -1.8 -0.8 type II toxin-antitoxin system antitoxin, RelB/DinJ family compare
BBR_RS20935 -1.8 -0.9 hypothetical protein compare
BBR_RS17490 -1.8 -4.8 MoxR family ATPase compare
BBR_RS10735 -1.8 -5.6 zinc metalloprotease HtpX compare
BBR_RS11425 -1.8 -6.9 ABC transporter permease compare
BBR_RS13070 -1.8 -0.4 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
BBR_RS15505 -1.8 -3.2 pyridoxal phosphate-dependent aminotransferase compare
BBR_RS15695 -1.8 -2.7 membrane channel protein compare
BBR_RS16885 -1.8 -3.9 carbohydrate kinase compare
BBR_RS16250 -1.8 -1.3 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB compare
BBR_RS12600 -1.8 -2.3 serine acetyltransferase compare
BBR_RS15680 -1.8 -2.8 succinate--CoA ligase subunit alpha compare
BBR_RS20450 -1.7 -9.3 murein biosynthesis integral membrane protein MurJ compare
BBR_RS15665 -1.7 -1.3 preprotein translocase subunit YajC compare
BBR_RS15230 -1.7 -2.2 elongation factor 4 compare
BBR_RS15920 -1.7 -2.1 type II toxin-antitoxin system YafQ family toxin compare
BBR_RS16680 -1.7 -3.5 prephenate dehydratase (EC 4.2.1.51) (from data) compare
BBR_RS11205 -1.7 -0.9 HPr family phosphocarrier protein compare
BBR_RS11805 -1.6 -2.0 hypothetical protein compare
BBR_RS12835 -1.6 -2.3 thioredoxin compare
BBR_RS20800 -1.6 -0.8 hypothetical protein compare
BBR_RS11420 -1.6 -6.7 DUF2318 domain-containing protein compare
BBR_RS17515 -1.5 -2.9 hypothetical protein compare
BBR_RS20665 -1.5 -2.2 hypothetical protein compare
BBR_RS19795 -1.5 -6.9 hypothetical protein compare
BBR_RS11680 -1.5 -4.4 23S rRNA methyltransferase compare
BBR_RS19105 -1.5 -2.7 FmdB family transcriptional regulator compare
BBR_RS16630 -1.5 -2.6 exodeoxyribonuclease III compare


Specific Phenotypes

For 2 genes in this experiment

For mouse diet=HighFatHighSugar; sample=FecalPellet in Bifidobacterium breve UCC2003

For mouse diet=HighFatHighSugar; sample=FecalPellet across organisms