Experiment set9IT018 for Bifidobacterium breve UCC2003
diet=HighFatHighSugar; sample=FecalPellet; mouse13; day1
Group: mouseMedia: + diet=HighFatHighSugar; sample=FecalPellet
Culturing: Bifido_ML2
By: Anthony Shiver on 8/20/2020
Specific Phenotypes
For 2 genes in this experiment
For mouse diet=HighFatHighSugar; sample=FecalPellet in Bifidobacterium breve UCC2003
For mouse diet=HighFatHighSugar; sample=FecalPellet across organisms
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| Beta-Glucoside Metabolism | 1 |
| Fructooligosaccharides(FOS) and Raffinose Utilization | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| neolinustatin bioactivation | 3 | 2 | 2 |
| linustatin bioactivation | 4 | 2 | 2 |
| methylglyoxal degradation III | 2 | 1 | 1 |
| lotaustralin degradation | 2 | 1 | 1 |
| linamarin degradation | 2 | 1 | 1 |
| cellulose degradation II (fungi) | 3 | 1 | 1 |
| coumarin biosynthesis (via 2-coumarate) | 5 | 2 | 1 |
| α-tomatine degradation | 6 | 1 | 1 |
| superpathway of methylglyoxal degradation | 8 | 2 | 1 |
| detoxification of reactive carbonyls in chloroplasts | 10 | 1 | 1 |
| firefly bioluminescence | 14 | 2 | 1 |