Experiment set9IT015 for Pseudomonas syringae pv. syringae B728a

Compare to:

KB with 4-hydroxychalcone 10 mM

200 most important genes:

  gene name fitness t score description  
Psyr_1544 -4.1 -5.6 SirA-like protein compare
Psyr_4340 -3.7 -12.8 phosphomethylpyrimidine kinase, putative compare
Psyr_4687 -3.4 -11.2 biotin synthase compare
Psyr_4341 -3.3 -9.1 thiamine-phosphate diphosphorylase compare
Psyr_4686 -3.3 -9.1 8-amino-7-oxononanoate synthase compare
Psyr_0034 -3.0 -5.0 tryptophan synthase, beta chain compare
Psyr_4740 -2.9 -9.2 thiazole-phosphate synthase compare
Psyr_0951 -2.7 -5.0 UBA/THIF-type NAD/FAD binding fold:MoeZ/MoeB compare
Psyr_0033 -2.7 -3.2 tryptophan synthase, alpha chain compare
Psyr_4683 -2.4 -5.3 dethiobiotin synthase compare
Psyr_1373 -2.3 -4.2 Peptidoglycan-binding LysM:Peptidase M23B compare
Psyr_0454 -2.3 -7.6 adenosylmethionine-8-amino-7-oxononanoate aminotransferase apoenzyme compare
Psyr_4203 -2.2 -2.5 SsrA-binding protein compare
Psyr_4091 -2.2 -5.4 8-oxo-dGTPase compare
Psyr_1663 -2.1 -5.6 phosphoribosylanthranilate isomerase compare
Psyr_0487 -2.1 -3.3 glutathione synthase compare
Psyr_4115 -2.1 -2.9 phosphoheptose isomerase compare
Psyr_0475 -2.0 -4.3 Protein of unknown function YGGT compare
Psyr_1613 -2.0 -4.7 septum site-determining protein MinC compare
Psyr_4418 -1.8 -3.9 Precorrin-6Y C5,15-methyltransferase (decarboxylating) compare
Psyr_3005 -1.7 -2.8 3-oxoadipate enol-lactonase compare
Psyr_5132 -1.6 -4.2 Glucose-inhibited division protein A subfamily compare
Psyr_4519 -1.6 -5.7 General substrate transporter:Major facilitator superfamily compare
Psyr_0838 -1.6 -3.7 Rieske [2Fe-2S] region compare
Psyr_0385 -1.6 -2.9 phosphoribosyl-ATP pyrophosphatase compare
Psyr_0531 -1.5 -2.6 LmbE-like protein compare
Psyr_0255 -1.5 -2.8 glutamate-cysteine ligase compare
Psyr_5135 -1.5 -0.9 Protein of unknown function DUF37 compare
Psyr_0571 -1.5 -4.2 tRNA isopentenyltransferase compare
Psyr_4774 -1.5 -1.7 Hypothetical protein compare
Psyr_3287 -1.4 -1.9 DNA topoisomerase I compare
Psyr_1952 -1.4 -3.0 hypothetical protein compare
Psyr_4893 -1.4 -0.9 imidazole glycerol phosphate synthase subunit hisF compare
Psyr_3419 -1.4 -4.5 4Fe-4S ferredoxin, iron-sulfur binding protein compare
Psyr_3193 -1.4 -3.4 Transcription factor jumonji, jmjC compare
Psyr_4684 -1.3 -1.7 biotin synthesis protein BioC compare
Psyr_0835 -1.3 -4.4 transcriptional regulator, TraR/DksA family compare
Psyr_5133 -1.3 -4.1 tRNA modification GTPase trmE compare
Psyr_3677 -1.3 -2.5 Aminotransferase, class I and II compare
Psyr_1747 -1.3 -4.9 ATP-dependent Clp protease proteolytic subunit ClpP compare
Psyr_4416 -1.3 -3.8 precorrin-8X methylmutase compare
Psyr_4580 -1.2 -3.9 anthranilate phosphoribosyltransferase compare
Psyr_3020 -1.2 -2.2 precorrin-4 C11-methyltransferase compare
Psyr_1419 -1.2 -3.2 preQ(0) biosynthesis protein QueC compare
Psyr_2980 -1.2 -2.3 UDP-glucose pyrophosphorylase compare
Psyr_4158 -1.2 -6.3 conserved hypothetical protein compare
Psyr_1140 -1.2 -2.7 Disulfide bond formation protein DsbB compare
Psyr_1371 -1.2 -5.4 5'-nucleotidase / exopolyphosphatase / 3'-nucleotidase compare
Psyr_3906 -1.2 -1.3 regulatory protein, DeoR compare
Psyr_3675 -1.2 -2.2 adenosylcobinamide kinase compare
Psyr_1410 -1.2 -4.0 Holliday junction DNA helicase RuvB compare
Psyr_0529 -1.2 -3.5 Glycosyl transferase, group 1 compare
Psyr_3199 -1.1 -2.6 NADH dehydrogenase subunit D / NADH dehydrogenase subunit C compare
Psyr_4362 -1.1 -2.1 Rare lipoprotein A compare
Psyr_1198 -1.1 -2.9 type III secretion protein HrpF compare
Psyr_0574 -1.1 -4.1 protease FtsH subunit HflK compare
Psyr_1907 -1.1 -2.2 GTP cyclohydrolase I compare
Psyr_3698 -1.0 -3.1 Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal:Hpt compare
Psyr_4490 -1.0 -1.4 transcriptional regulator, DeoR family compare
Psyr_1614 -1.0 -0.7 lipid A biosynthesis acyltransferase compare
Psyr_2582 -1.0 -5.9 TonB-dependent siderophore receptor compare
Psyr_2594 -1.0 -0.9 unknown conserved protein in bacilli compare
Psyr_0549 -1.0 -2.0 Metallophosphoesterase compare
Psyr_2779 -1.0 -2.4 Phage minor tail compare
Psyr_4512 -1.0 -4.8 putative phage-related protein compare
Psyr_0281 -1.0 -2.9 ABC transporter compare
Psyr_2593 -1.0 -2.1 ABC transporter compare
Psyr_3357 -1.0 -2.0 transcriptional regulator, LysR family compare
Psyr_3597 -1.0 -1.3 ABC transporter compare
Psyr_3208 -1.0 -2.4 NADH dehydrogenase subunit M compare
Psyr_3315 -1.0 -1.7 conserved hypothetical protein compare
Psyr_0575 -1.0 -2.5 protease FtsH subunit HflC compare
Psyr_2196 -1.0 -1.4 Urease accessory protein UreG compare
Psyr_3886 -1.0 -1.6 methionyl-tRNA synthetase compare
Psyr_4015 -1.0 -1.9 conserved domain protein compare
Psyr_0918 -1.0 -6.9 ABC transporter compare
Psyr_4407 -0.9 -2.5 phosphoribosylamine--glycine ligase compare
Psyr_1227 -0.9 -1.9 Queuosine biosynthesis protein compare
Psyr_1017 -0.9 -1.9 type III effector HopJ1 compare
Psyr_1556 -0.9 -2.1 hypothetical protein compare
Psyr_1408 -0.9 -2.1 Holliday junction endonuclease RuvC compare
Psyr_0826 -0.9 -4.3 glucose-6-phosphate isomerase compare
Psyr_2285 -0.9 -1.3 Twin-arginine translocation pathway signal compare
Psyr_3904 -0.9 -4.2 Major intrinsic protein compare
Psyr_3665 -0.9 -3.4 conserved hypothetical protein compare
Psyr_2591 -0.9 -3.8 transport system permease protein compare
Psyr_2897 -0.9 -3.7 regulatory protein, LuxR:Response regulator receiver compare
Psyr_RNA28 -0.9 -1.4 tRNA-Val compare
Psyr_3796 -0.9 -2.4 transcriptional regulator, LysR family compare
Psyr_3620 -0.9 -1.5 hypothetical protein compare
Psyr_4874 -0.9 -1.9 ABC transporter compare
Psyr_2752 -0.8 -1.4 conserved hypothetical protein compare
Psyr_3644 -0.8 -2.6 prephenate dehydrogenase compare
Psyr_4089 -0.8 -3.9 PAS compare
Psyr_4408 -0.8 -3.9 Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal:Histidine kinase:Histidine kinase compare
Psyr_3014 -0.8 -2.4 protoporphyrin IX magnesium-chelatase compare
Psyr_3673 -0.8 -1.4 Phosphoglycerate/bisphosphoglycerate mutase compare
Psyr_4618 -0.8 -1.9 regulatory protein, LuxR:Response regulator receiver compare
Psyr_4465 -0.8 -1.3 conserved domain protein compare
Psyr_2112 -0.8 -1.5 Protein with unknown function DUF469 compare
Psyr_0917 -0.8 -5.7 ABC-2 compare
Psyr_0014 -0.8 -0.8 lipid A biosynthesis acyltransferase compare
Psyr_1418 -0.8 -2.1 Radical SAM compare
Psyr_1024 -0.8 -1.5 Flavodoxin/nitric oxide synthase compare
Psyr_0498 -0.8 -1.6 Protein of unknown function DUF1445 compare
Psyr_4001 -0.8 -1.2 conserved domain protein compare
Psyr_1458 -0.8 -1.8 hypothetical protein compare
Psyr_4822 -0.8 -2.3 Helix-turn-helix, Fis-type:Nitrogen regulation protein NR(I) compare
Psyr_2855 -0.8 -2.6 methionine synthase (B12-independent) compare
Psyr_3947 -0.8 -1.2 Methyltransferase, putative compare
Psyr_0831 -0.8 -2.0 Two-component response regulator CbrB compare
Psyr_0735 -0.8 -2.0 Peptidase S24, S26A and S26B compare
Psyr_0914 -0.8 -5.7 Glycosyl transferase, group 1 compare
Psyr_1953 -0.8 -1.2 conserved hypothetical protein compare
Psyr_2543 -0.8 -2.0 conserved hypothetical protein compare
Psyr_1910 -0.8 -3.0 VacJ-like lipoprotein compare
Psyr_0393 -0.8 -2.8 Protein of unknown function DUF971 compare
Psyr_3427 -0.8 -2.0 conserved hypothetical protein compare
Psyr_1530 -0.8 -1.6 hypothetical protein compare
Psyr_4138 -0.8 -2.6 Toluene tolerance compare
Psyr_4881 -0.8 -1.6 RNA methyltransferase TrmH, group 2 compare
Psyr_3031 -0.8 -2.0 Thiolase compare
Psyr_1806 -0.8 -1.4 Ureidoglycolate hydrolase compare
Psyr_0565 -0.8 -3.5 Protein of unknown function UPF0126 compare
Psyr_2521 -0.8 -2.0 conserved hypothetical protein compare
Psyr_4194 -0.8 -2.2 DnaJ central region:Heat shock protein DnaJ, N-terminal:Chaperone DnaJ, C-terminal compare
Psyr_3636 -0.8 -5.5 Polysaccharide biosynthesis protein CapD compare
Psyr_0936 -0.8 -5.4 Glycosyl transferase, group 1 compare
Psyr_3554 -0.8 -1.2 Carbon storage regulator compare
Psyr_1864 -0.8 -2.0 spermidine synthase compare
Psyr_1104 -0.7 -2.7 Heme oxygenase compare
Psyr_2818 -0.7 -2.5 hypothetical protein compare
Psyr_4566 -0.7 -4.2 Peptidase M23B compare
Psyr_2620 -0.7 -1.8 RND efflux system, outer membrane lipoprotein, NodT compare
Psyr_1097 -0.7 -1.5 glycine cleavage system H protein compare
Psyr_2544 -0.7 -2.4 Alkylhydroperoxidase AhpD core:Uncharacterized peroxidase-related protein compare
Psyr_3374 -0.7 -1.7 Heavy metal response regulator compare
Psyr_2150 -0.7 -2.2 protein of unknown function DUF903 compare
Psyr_1372 -0.7 -2.4 Protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
Psyr_5067 -0.7 -2.8 conserved hypothetical protein compare
Psyr_2579 -0.7 -3.4 Aldehyde dehydrogenase compare
Psyr_1588 -0.7 -2.2 Putative exonuclease, RdgC compare
Psyr_1885 -0.7 -1.1 hypothetical protein compare
Psyr_0916 -0.7 -4.9 GDP-mannose 4,6-dehydratase compare
Psyr_2143 -0.7 -1.3 delta1-piperideine 2-carboxylate reductase compare
Psyr_3676 -0.7 -2.7 adenosylcobyric acid synthase (glutamine-hydrolysing) compare
Psyr_3008 -0.7 -2.7 Undecaprenyl-diphosphatase compare
Psyr_3135 -0.7 -1.1 transcriptional regulator, GntR family compare
Psyr_2829 -0.7 -1.2 conserved hypothetical protein compare
Psyr_3637 -0.7 -4.9 Glycosyl transferase, family 4 compare
Psyr_3791 -0.7 -2.0 Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal compare
Psyr_1350 -0.7 -1.8 site-2 protease, Metallo peptidase, MEROPS family M50B compare
Psyr_4622 -0.7 -2.0 Nucleotidyl transferase compare
Psyr_2392 -0.7 -2.5 conserved hypothetical protein compare
Psyr_2231 -0.7 -2.7 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase compare
Psyr_2973 -0.7 -1.4 Glyoxalase I compare
Psyr_0849 -0.7 -4.0 CDP-diacylglycerol--serine O-phosphatidyltransferase compare
Psyr_3688 -0.7 -1.0 conserved hypothetical protein compare
Psyr_3695 -0.7 -4.3 RelA/SpoT protein compare
Psyr_0404 -0.7 -2.0 Fimbrial assembly compare
Psyr_1002 -0.7 -2.7 nucleoside ABC transporter ATP-binding protein compare
Psyr_3842 -0.6 -3.1 SNF2-related:Helicase, C-terminal:Type III restriction enzyme, res subunit compare
Psyr_2073 -0.6 -1.8 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase compare
Psyr_0051 -0.6 -1.7 conserved hypothetical protein compare
Psyr_2095 -0.6 -3.0 Conserved TM helix compare
Psyr_2921 -0.6 -1.2 ADP-ribosylglycohydrolase compare
Psyr_2836 -0.6 -2.6 hypothetical protein compare
Psyr_2244 -0.6 -1.3 DNA topoisomerase III compare
Psyr_4386 -0.6 -1.8 conserved hypothetical protein compare
Psyr_0830 -0.6 -2.3 Poly(A) polymerase compare
Psyr_2180 -0.6 -1.7 transcriptional regulator, LysR family compare
Psyr_5089 -0.6 -3.0 ATP-binding region, ATPase-like:Histidine kinase A, N-terminal compare
Psyr_0041 -0.6 -1.8 Protein of unknown function DUF1161 compare
Psyr_0219 -0.6 -3.8 phosphomannomutase compare
Psyr_3312 -0.6 -2.4 transcriptional regulator, LysR family compare
Psyr_1947 -0.6 -1.0 MbtH-like protein compare
Psyr_3662 -0.6 -1.6 NAD(P)H dehydrogenase (quinone) compare
Psyr_4139 -0.6 -2.6 Mce4/Rv3499c/MTV023.06c protein compare
Psyr_1268 -0.6 -2.8 extracellular solute-binding protein, family 3:SLT compare
Psyr_2534 -0.6 -1.6 Carboxymethylenebutenolidase compare
Psyr_3473 -0.6 -1.5 Flagellar P-ring protein compare
Psyr_4455 -0.6 -2.0 conserved hypothetical protein compare
Psyr_2092 -0.6 -1.4 Protein of unknown function 1935 compare
Psyr_2256 -0.6 -1.4 ABC transporter compare
Psyr_3202 -0.6 -1.0 NADH dehydrogenase subunit G compare
Psyr_3293 -0.6 -1.4 UspA compare
Psyr_2201 -0.6 -0.9 amino acid/amide ABC transporter ATP-binding protein 2, HAAT family compare
Psyr_1368 -0.6 -2.9 Carboxylesterase compare
Psyr_2346 -0.6 -3.1 conserved hypothetical protein compare
Psyr_1405 -0.6 -1.2 hypothetical protein compare
Psyr_0372 -0.6 -1.9 CDS compare
Psyr_0184 -0.6 -1.7 Protein of unknown function DUF484 compare
Psyr_2226 -0.6 -2.2 formyltetrahydrofolate deformylase compare
Psyr_3562 -0.6 -1.6 succinylglutamic semialdehyde dehydrogenase compare
Psyr_2211 -0.6 -1.5 monooxygenase, NtaA/SnaA/SoxA family compare
Psyr_0982 -0.6 -1.6 conserved hypothetical protein compare
Psyr_1942 -0.6 -1.5 conserved hypothetical protein compare
Psyr_4335 -0.6 -1.6 transcriptional regulator, AsnC family compare
Psyr_0263 -0.6 -2.7 Two-component response regulator AlgB compare
Psyr_0259 -0.6 -2.0 Osmolarity sensor protein envZ compare


Specific Phenotypes

None in this experiment

For Pseudomonas syringae pv. syringae B728a in stress experiments

For stress 4-hydroxychalcone across organisms