Experiment set9IT010 for Paraburkholderia graminis OAS925

Compare to:

Acetylated xylan 10 g/L carbon source

200 most important genes:

  gene name fitness t score description  
ABIE53_003162 -5.1 -7.0 OOP family OmpA-OmpF porin compare
ABIE53_001696 -5.0 -2.9 ABC-type Fe3+-siderophore transport system permease subunit compare
ABIE53_004858 -4.6 -4.4 farnesyl diphosphate synthase compare
ABIE53_000414 -4.3 -15.3 homoserine O-acetyltransferase compare
ABIE53_003157 -4.1 -7.3 chorismate mutase/prephenate dehydratase compare
ABIE53_003712 -4.1 -10.5 phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein compare
ABIE53_003556 -4.0 -6.1 2-dehydro-3-deoxyphosphogalactonate aldolase compare
ABIE53_003752 -4.0 -1.4 cytochrome c-type biogenesis protein CcsB compare
ABIE53_004645 -4.0 -3.9 hopanoid-associated phosphorylase compare
ABIE53_000313 -4.0 -16.7 glutamate--cysteine ligase compare
ABIE53_003939 -3.9 -2.3 type VI secretion system protein ImpB compare
ABIE53_006397 -3.9 -2.7 putative dinucleotide-binding enzyme compare
ABIE53_002782 -3.9 -4.6 Rrf2 family iron-sulfur cluster assembly transcriptional regulator compare
ABIE53_000884 -3.8 -2.7 biopolymer transport protein TolR compare
ABIE53_003711 -3.8 -9.9 phospholipid/cholesterol/gamma-HCH transport system permease protein compare
ABIE53_005462 -3.8 -2.0 DNA-binding MarR family transcriptional regulator compare
ABIE53_004998 -3.8 -2.1 pilus assembly protein CpaF compare
ABIE53_003735 -3.7 -2.6 hypothetical protein compare
ABIE53_004804 -3.7 -6.6 3-isopropylmalate dehydrogenase compare
ABIE53_000666 -3.7 -3.6 preprotein translocase subunit SecB compare
ABIE53_003640 -3.6 -11.3 anthranilate synthase component 1 compare
ABIE53_003881 -3.6 -1.2 dihydroxyacetone kinase-like protein compare
ABIE53_000403 -3.6 -3.5 rod shape-determining protein MreD compare
ABIE53_000830 -3.6 -2.3 preprotein translocase subunit YajC compare
ABIE53_002856 -3.6 -2.3 transcription elongation GreA/GreB family factor compare
ABIE53_006476 -3.5 -1.2 hypothetical protein compare
ABIE53_003525 -3.5 -12.6 LPS-assembly lipoprotein compare
ABIE53_000423 -3.5 -2.4 DnaK suppressor protein compare
ABIE53_003531 -3.4 -2.2 Fur family ferric uptake transcriptional regulator compare
ABIE53_003160 -3.4 -7.9 hypothetical protein compare
ABIE53_004648 -3.4 -3.3 squalene synthase HpnD compare
ABIE53_001227 -3.4 -2.2 uncharacterized protein (DUF934 family) compare
ABIE53_004811 -3.4 -4.0 tryptophan synthase alpha chain compare
ABIE53_000885 -3.3 -4.6 biopolymer transport protein TolQ compare
ABIE53_000667 -3.3 -5.5 glycerol-3-phosphate dehydrogenase (NAD(P)+) compare
ABIE53_001944 -3.3 -1.8 HTH-type transcriptional regulator/antitoxin HigA compare
ABIE53_003305 -3.3 -4.5 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABIE53_004803 -3.3 -5.0 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit compare
ABIE53_002233 -3.3 -1.8 LysR family transcriptional activator of nhaA compare
ABIE53_004817 -3.2 -7.4 O-succinylhomoserine sulfhydrylase compare
ABIE53_000061 -3.2 -5.7 methylenetetrahydrofolate reductase (NADPH) compare
ABIE53_002117 -3.2 -4.4 ATP-dependent Lon protease compare
ABIE53_003733 -3.2 -5.2 glutamate synthase domain-containing protein 3 compare
ABIE53_003734 -3.2 -8.0 glutamate synthase (NADPH/NADH) large chain compare
ABIE53_004630 -3.2 -1.8 hypothetical protein compare
ABIE53_000836 -3.1 -9.7 catalase compare
ABIE53_000656 -3.1 -19.1 glutamate--cysteine ligase compare
ABIE53_000657 -3.1 -9.0 glutathione synthase compare
ABIE53_006337 -3.1 -2.1 hypothetical protein compare
ABIE53_003710 -3.0 -8.5 phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein compare
ABIE53_003674 -3.0 -2.1 AcrR family transcriptional regulator compare
ABIE53_001229 -3.0 -4.1 sulfate adenylyltransferase subunit 2 compare
ABIE53_004144 -3.0 -2.9 DNA-binding NarL/FixJ family response regulator compare
ABIE53_000413 -2.9 -5.9 methionine biosynthesis protein MetW compare
ABIE53_003017 -2.9 -2.0 trehalose 6-phosphate phosphatase compare
ABIE53_003186 -2.9 -5.6 disulfide bond formation protein DsbB compare
ABIE53_004866 -2.9 -17.3 RNA polymerase primary sigma factor compare
ABIE53_002857 -2.9 -6.5 phosphomethylpyrimidine synthase compare
ABIE53_006042 -2.9 -2.8 type III secretion protein HrpB1 compare
ABIE53_003588 -2.9 -2.8 glutamate 5-kinase compare
ABIE53_000649 -2.9 -3.4 peroxiredoxin compare
ABIE53_001976 -2.9 -1.4 hypothetical protein compare
ABIE53_003536 -2.9 -4.4 glyceraldehyde 3-phosphate dehydrogenase compare
ABIE53_003665 -2.9 -7.5 monothiol glutaredoxin compare
ABIE53_006090 -2.9 -1.9 antitoxin MazE compare
ABIE53_000875 -2.9 -2.8 tRNA dimethylallyltransferase compare
ABIE53_005782 -2.9 -1.0 hypothetical protein compare
ABIE53_004922 -2.8 -2.1 LysR family pca operon transcriptional activator compare
ABIE53_000798 -2.8 -3.3 peptidyl-prolyl cis-trans isomerase SurA compare
ABIE53_004641 -2.8 -14.3 hopanoid biosynthesis associated radical SAM protein HpnH compare
ABIE53_003708 -2.8 -8.2 phospholipid transport system substrate-binding protein compare
ABIE53_003394 -2.8 -3.3 sorbitol/mannitol transport system permease protein compare
ABIE53_003306 -2.8 -6.2 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABIE53_002862 -2.8 -7.6 outer membrane protein assembly factor BamC compare
ABIE53_001230 -2.8 -5.0 sulfate adenylyltransferase subunit 1 compare
ABIE53_004925 -2.8 -2.2 hypothetical protein compare
ABIE53_004390 -2.8 -2.7 uncharacterized protein YfaQ (DUF2300 family) compare
ABIE53_000768 -2.8 -6.4 FAD/FMN-containing dehydrogenase/Fe-S oxidoreductase compare
ABIE53_003638 -2.8 -1.9 ribulose-phosphate 3-epimerase compare
ABIE53_000287 -2.7 -5.5 DNA-binding MarR family transcriptional regulator compare
ABIE53_003707 -2.7 -3.6 phospholipid transport system transporter-binding protein compare
ABIE53_001324 -2.7 -1.5 hypothetical protein compare
ABIE53_006380 -2.7 -1.6 hypothetical protein compare
ABIE53_000598 -2.7 -3.2 thiol:disulfide interchange protein DsbA compare
ABIE53_004801 -2.7 -6.0 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit compare
ABIE53_003689 -2.7 -7.9 sec-independent protein translocase protein TatB compare
ABIE53_000850 -2.7 -5.7 3-deoxy-7-phosphoheptulonate synthase compare
ABIE53_001686 -2.7 -3.2 putative ATP-binding cassette transporter compare
ABIE53_002566 -2.7 -2.5 LysR family transcriptional activator of dmlA compare
ABIE53_004325 -2.7 -4.6 hypothetical protein compare
ABIE53_000663 -2.6 -9.0 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
ABIE53_003579 -2.6 -3.1 AmpD protein compare
ABIE53_005874 -2.6 -1.9 protease I compare
ABIE53_004646 -2.6 -13.7 squalene-hopene/tetraprenyl-beta-curcumene cyclase compare
ABIE53_000838 -2.6 -8.2 starvation-inducible DNA-binding protein compare
ABIE53_002867 -2.6 -10.2 2-isopropylmalate synthase compare
ABIE53_004484 -2.6 -1.7 hypothetical protein compare
ABIE53_003367 -2.6 -2.1 tRNA(fMet)-specific endonuclease VapC compare
ABIE53_001530 -2.6 -2.4 hypothetical protein compare
ABIE53_003517 -2.6 -3.0 phosphogluconate dehydratase compare
ABIE53_003013 -2.6 -4.2 hypothetical protein compare
ABIE53_001064 -2.5 -2.9 hypothetical protein compare
ABIE53_005339 -2.5 -2.4 TPR repeat protein compare
ABIE53_006219 -2.5 -1.2 hypothetical protein compare
ABIE53_006270 -2.5 -1.2 putative dinucleotide-binding enzyme compare
ABIE53_002690 -2.5 -2.9 GST-like protein compare
ABIE53_001868 -2.5 -2.9 monosaccharide-transporting ATPase compare
ABIE53_003125 -2.4 -3.3 large subunit ribosomal protein L19 compare
ABIE53_000883 -2.4 -1.1 colicin import membrane protein compare
ABIE53_001818 -2.4 -2.5 hypothetical protein compare
ABIE53_003749 -2.4 -4.9 diaminopimelate decarboxylase compare
ABIE53_005281 -2.4 -1.6 cytochrome c oxidase subunit 2 compare
ABIE53_001225 -2.4 -4.2 LysR family cys regulon transcriptional activator compare
ABIE53_000650 -2.4 -10.5 thiol-disulfide isomerase/thioredoxin compare
ABIE53_001746 -2.3 -2.2 hypothetical protein compare
ABIE53_003158 -2.3 -2.1 phosphoserine aminotransferase compare
ABIE53_000063 -2.3 -3.5 adenosylhomocysteinase compare
ABIE53_001416 -2.3 -1.6 transaldolase compare
ABIE53_002004 -2.3 -5.3 anti-sigma factor RsiW compare
ABIE53_001228 -2.3 -1.6 phosphoadenosine phosphosulfate reductase compare
ABIE53_000714 -2.3 -10.7 UPF0042 nucleotide-binding protein compare
ABIE53_001226 -2.3 -4.8 sulfite reductase (NADPH) hemoprotein beta-component compare
ABIE53_006376 -2.3 -0.7 protein TonB compare
ABIE53_003664 -2.3 -3.7 release factor glutamine methyltransferase compare
ABIE53_001644 -2.3 -3.7 aromatic-amino-acid transaminase compare
ABIE53_003159 -2.3 -2.7 phosphoserine aminotransferase compare
ABIE53_002494 -2.2 -2.6 outer membrane protein compare
ABIE53_003044 -2.2 -1.7 hypothetical protein compare
ABIE53_006272 -2.2 -3.0 AcrR family transcriptional regulator compare
ABIE53_002798 -2.2 -10.2 oligopeptidase A compare
ABIE53_001694 -2.2 -3.0 iron complex outermembrane receptor protein compare
ABIE53_005871 -2.2 -1.7 hypothetical protein compare
ABIE53_004254 -2.2 -2.8 putative membrane protein YkgB compare
ABIE53_001235 -2.2 -4.8 leucyl aminopeptidase compare
ABIE53_000682 -2.2 -11.1 cytochrome c oxidase assembly protein subunit 15 compare
ABIE53_003483 -2.2 -2.1 magnesium and cobalt transporter compare
ABIE53_003175 -2.2 -9.7 tetratricopeptide (TPR) repeat protein compare
ABIE53_003011 -2.1 -10.0 ATP-binding cassette subfamily B protein compare
ABIE53_004973 -2.1 -0.7 hypothetical protein compare
ABIE53_002101 -2.1 -3.5 two-component system phosphate regulon response regulator OmpR compare
ABIE53_001853 -2.1 -0.7 hypothetical protein compare
ABIE53_005302 -2.1 -4.4 2,4-dienoyl-CoA reductase-like NADH-dependent reductase (Old Yellow Enzyme family) compare
ABIE53_003231 -2.1 -1.0 DNA-directed RNA polymerase subunit omega compare
ABIE53_000683 -2.1 -8.9 protoheme IX farnesyltransferase compare
ABIE53_000795 -2.1 -1.4 MurNAc alpha-1-phosphate uridylyltransferase compare
ABIE53_002762 -2.1 -1.4 enolase compare
ABIE53_002594 -2.0 -1.4 SfnB family sulfur acquisition oxidoreductase compare
ABIE53_002528 -2.0 -2.7 LPLT family lysophospholipid transporter-like MFS transporter compare
ABIE53_005419 -2.0 -1.4 nitroreductase compare
ABIE53_003688 -2.0 -9.9 sec-independent protein translocase protein TatC compare
ABIE53_001572 -2.0 -4.2 hypothetical protein compare
ABIE53_004343 -2.0 -3.5 peptide/nickel transport system permease protein compare
ABIE53_006316 -2.0 -1.5 nitrate/nitrite transporter NarK compare
ABIE53_005384 -2.0 -2.2 putative lipoprotein YmbA compare
ABIE53_003084 -2.0 -5.0 fumarate hydratase class II compare
ABIE53_001490 -2.0 -2.2 uncharacterized protein (DUF1330 family) compare
ABIE53_002739 -2.0 -1.4 outer membrane protein assembly factor BamB compare
ABIE53_001841 -2.0 -3.3 putative spermidine/putrescine transport system ATP-binding protein compare
ABIE53_006420 -2.0 -0.6 hyperosmotically inducible protein compare
ABIE53_003043 -2.0 -9.3 RNA polymerase sigma-70 factor (ECF subfamily) compare
ABIE53_005061 -2.0 -8.9 DNA-binding CsgD family transcriptional regulator compare
ABIE53_000678 -2.0 -8.0 cytochrome c oxidase subunit 3 compare
ABIE53_004207 -2.0 -3.1 phasin family protein compare
ABIE53_001312 -2.0 -5.3 transcriptional regulator with XRE-family HTH domain compare
ABIE53_002846 -2.0 -1.8 uncharacterized membrane protein YtjA (UPF0391 family) compare
ABIE53_004548 -2.0 -1.4 4-oxalocrotonate tautomerase compare
ABIE53_004099 -2.0 -7.5 manganese transport protein compare
ABIE53_000833 -1.9 -5.4 ATP-dependent DNA helicase RecG compare
ABIE53_000674 -1.9 -7.3 cytochrome c oxidase subunit 1 compare
ABIE53_006398 -1.9 -1.8 FMN-dependent oxidoreductase (nitrilotriacetate monooxygenase family) compare
ABIE53_002259 -1.9 -2.6 DeoR family deoxyribose operon repressor compare
ABIE53_006490 -1.9 -1.1 DNA-binding transcriptional MerR regulator compare
ABIE53_001711 -1.9 -1.3 uncharacterized membrane protein YtjA (UPF0391 family) compare
ABIE53_002015 -1.9 -4.7 peroxiredoxin Q/BCP compare
ABIE53_003216 -1.9 -13.2 aminopeptidase N compare
ABIE53_005562 -1.9 -1.3 CDP-diacylglycerol pyrophosphatase compare
ABIE53_006257 -1.9 -1.7 hypothetical protein compare
ABIE53_005976 -1.9 -2.5 xanthine dehydrogenase YagS FAD-binding subunit compare
ABIE53_004735 -1.9 -3.2 CspA family cold shock protein compare
ABIE53_001469 -1.9 -2.2 RimJ/RimL family protein N-acetyltransferase compare
ABIE53_002228 -1.9 -1.8 putative glutamine amidotransferase compare
ABIE53_005230 -1.9 -2.2 homoprotocatechuate degradation regulator HpaR compare
ABIE53_006159 -1.9 -2.8 sarcosine oxidase subunit beta compare
ABIE53_003278 -1.9 -9.1 nucleoside-diphosphate-sugar epimerase compare
ABIE53_006363 -1.9 -1.2 uncharacterized protein YciI compare
ABIE53_002102 -1.9 -4.7 hypothetical protein compare
ABIE53_000316 -1.9 -10.3 hypothetical protein compare
ABIE53_004395 -1.9 -1.5 hypothetical protein compare
ABIE53_006137 -1.9 -2.0 membrane dipeptidase compare
ABIE53_004810 -1.9 -7.3 site-specific DNA-methyltransferase (adenine-specific) compare
ABIE53_000659 -1.8 -4.3 phosphocarrier protein HPr compare
ABIE53_002304 -1.8 -2.5 cytochrome c oxidase subunit I+III compare
ABIE53_003361 -1.8 -5.1 integrase/recombinase XerD compare
ABIE53_005778 -1.8 -2.5 hypothetical protein compare
ABIE53_004181 -1.8 -1.6 sarcosine oxidase subunit beta compare
ABIE53_001598 -1.8 -1.2 NADH-quinone oxidoreductase subunit I compare
ABIE53_003572 -1.8 -8.8 adenosine kinase compare
ABIE53_003586 -1.8 -6.5 putative (di)nucleoside polyphosphate hydrolase compare
ABIE53_004643 -1.8 -8.7 hopanoid biosynthesis associated RND transporter like protein HpnN compare
ABIE53_003211 -1.8 -2.7 acyl carrier protein compare


Specific Phenotypes

For 29 genes in this experiment

For carbon source Acetylated xylan in Paraburkholderia graminis OAS925

For carbon source Acetylated xylan across organisms