Experiment set9IT006 for Pseudomonas syringae pv. syringae B728a

Compare to:

KB with Veratrine hydrochloride 10 mM

200 most important genes:

  gene name fitness t score description  
Psyr_1544 -4.6 -5.4 SirA-like protein compare
Psyr_4340 -4.1 -12.7 phosphomethylpyrimidine kinase, putative compare
Psyr_4115 -4.0 -4.6 phosphoheptose isomerase compare
Psyr_4740 -3.7 -10.0 thiazole-phosphate synthase compare
Psyr_0034 -3.4 -4.0 tryptophan synthase, beta chain compare
Psyr_0951 -3.2 -3.6 UBA/THIF-type NAD/FAD binding fold:MoeZ/MoeB compare
Psyr_4686 -3.1 -9.2 8-amino-7-oxononanoate synthase compare
Psyr_4683 -3.0 -6.2 dethiobiotin synthase compare
Psyr_4091 -2.9 -5.1 8-oxo-dGTPase compare
Psyr_4687 -2.8 -11.6 biotin synthase compare
Psyr_4341 -2.7 -6.5 thiamine-phosphate diphosphorylase compare
Psyr_0529 -2.7 -6.8 Glycosyl transferase, group 1 compare
Psyr_0454 -2.6 -8.3 adenosylmethionine-8-amino-7-oxononanoate aminotransferase apoenzyme compare
Psyr_3208 -2.5 -4.3 NADH dehydrogenase subunit M compare
Psyr_3419 -2.4 -5.8 4Fe-4S ferredoxin, iron-sulfur binding protein compare
Psyr_4684 -2.2 -4.3 biotin synthesis protein BioC compare
Psyr_4203 -2.2 -3.4 SsrA-binding protein compare
Psyr_0255 -2.2 -3.4 glutamate-cysteine ligase compare
Psyr_5132 -2.1 -3.5 Glucose-inhibited division protein A subfamily compare
Psyr_0033 -2.0 -3.5 tryptophan synthase, alpha chain compare
Psyr_1373 -1.8 -2.7 Peptidoglycan-binding LysM:Peptidase M23B compare
Psyr_1613 -1.8 -4.6 septum site-determining protein MinC compare
Psyr_2980 -1.8 -3.7 UDP-glucose pyrophosphorylase compare
Psyr_0835 -1.8 -6.1 transcriptional regulator, TraR/DksA family compare
Psyr_4519 -1.7 -5.9 General substrate transporter:Major facilitator superfamily compare
Psyr_4362 -1.7 -2.9 Rare lipoprotein A compare
Psyr_0487 -1.7 -3.2 glutathione synthase compare
Psyr_5135 -1.5 -0.8 Protein of unknown function DUF37 compare
Psyr_1910 -1.5 -4.7 VacJ-like lipoprotein compare
Psyr_1371 -1.5 -7.2 5'-nucleotidase / exopolyphosphatase / 3'-nucleotidase compare
Psyr_3199 -1.4 -3.0 NADH dehydrogenase subunit D / NADH dehydrogenase subunit C compare
Psyr_2854 -1.4 -4.9 conserved hypothetical protein compare
Psyr_4893 -1.4 -1.6 imidazole glycerol phosphate synthase subunit hisF compare
Psyr_1270 -1.4 -1.8 conserved hypothetical protein compare
Psyr_1645 -1.3 -3.6 phosphate:acyl-[acyl carrier protein] acyltransferase compare
Psyr_4194 -1.3 -3.3 DnaJ central region:Heat shock protein DnaJ, N-terminal:Chaperone DnaJ, C-terminal compare
Psyr_2456 -1.3 -3.0 Short-chain dehydrogenase/reductase SDR compare
Psyr_5067 -1.3 -4.8 conserved hypothetical protein compare
Psyr_2386 -1.3 -3.2 hypothetical protein compare
Psyr_1688 -1.2 -2.2 Protein of unknown function DUF1315 compare
Psyr_4418 -1.2 -2.6 Precorrin-6Y C5,15-methyltransferase (decarboxylating) compare
Psyr_4158 -1.2 -7.1 conserved hypothetical protein compare
Psyr_0574 -1.2 -4.4 protease FtsH subunit HflK compare
Psyr_0982 -1.2 -2.9 conserved hypothetical protein compare
Psyr_0918 -1.2 -9.1 ABC transporter compare
Psyr_4582 -1.2 -1.4 hypothetical protein compare
Psyr_3013 -1.2 -2.3 magnesium chelatase subunit ChlD compare
Psyr_2620 -1.2 -2.7 RND efflux system, outer membrane lipoprotein, NodT compare
Psyr_4139 -1.2 -4.1 Mce4/Rv3499c/MTV023.06c protein compare
Psyr_3193 -1.2 -2.0 Transcription factor jumonji, jmjC compare
Psyr_0372 -1.2 -3.3 CDS compare
Psyr_0826 -1.1 -4.8 glucose-6-phosphate isomerase compare
Psyr_0849 -1.1 -6.7 CDP-diacylglycerol--serine O-phosphatidyltransferase compare
Psyr_1268 -1.1 -5.3 extracellular solute-binding protein, family 3:SLT compare
Psyr_4860 -1.1 -1.3 Integrase, catalytic region compare
Psyr_3791 -1.1 -3.0 Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal compare
Psyr_0917 -1.1 -7.2 ABC-2 compare
Psyr_3755 -1.1 -1.5 conserved hypothetical protein compare
Psyr_3133 -1.1 -1.7 Amidohydrolase 2 compare
Psyr_0885 -1.1 -1.9 conserved hypothetical protein compare
Psyr_4627 -1.1 -2.2 dimethyladenosine transferase compare
Psyr_1419 -1.1 -3.3 preQ(0) biosynthesis protein QueC compare
Psyr_2733 -1.1 -2.5 Short-chain dehydrogenase/reductase SDR compare
Psyr_2591 -1.1 -4.0 transport system permease protein compare
Psyr_3287 -1.1 -1.8 DNA topoisomerase I compare
Psyr_3947 -1.1 -1.9 Methyltransferase, putative compare
Psyr_2985 -1.1 -1.9 DNA-N1-methyladenine dioxygenase compare
Psyr_4512 -1.0 -5.5 putative phage-related protein compare
Psyr_0576 -1.0 -2.6 ATP phosphoribosyltransferase regulatory subunit, putative compare
Psyr_4138 -1.0 -3.5 Toluene tolerance compare
Psyr_0571 -1.0 -3.2 tRNA isopentenyltransferase compare
Psyr_0916 -1.0 -6.9 GDP-mannose 4,6-dehydratase compare
Psyr_0535 -1.0 -2.8 toluene tolerance protein, putative compare
Psyr_4566 -1.0 -5.3 Peptidase M23B compare
Psyr_3358 -1.0 -2.7 transmembrane pair compare
Psyr_0936 -1.0 -6.9 Glycosyl transferase, group 1 compare
Psyr_4991 -1.0 -1.4 hypothetical protein compare
Psyr_3842 -1.0 -3.6 SNF2-related:Helicase, C-terminal:Type III restriction enzyme, res subunit compare
Psyr_3904 -1.0 -4.2 Major intrinsic protein compare
Psyr_0724 -1.0 -1.4 conserved hypothetical protein compare
Psyr_0386 -1.0 -3.0 phosphoribosyl-AMP cyclohydrolase compare
Psyr_1408 -1.0 -1.8 Holliday junction endonuclease RuvC compare
Psyr_2594 -1.0 -1.1 unknown conserved protein in bacilli compare
Psyr_3425 -1.0 -2.1 Cyclic nucleotide-binding:Bacterial regulatory protein, Crp compare
Psyr_2869 -1.0 -3.1 xenobiotic compound monooxygenase, DszA family compare
Psyr_4089 -1.0 -3.8 PAS compare
Psyr_2088 -1.0 -2.0 2-methylaconitate cis-trans isomerase compare
Psyr_2897 -1.0 -3.3 regulatory protein, LuxR:Response regulator receiver compare
Psyr_0838 -1.0 -1.6 Rieske [2Fe-2S] region compare
Psyr_2137 -0.9 -1.1 molybdopterin molybdochelatase compare
Psyr_2582 -0.9 -5.6 TonB-dependent siderophore receptor compare
Psyr_2471 -0.9 -1.8 hydroxymethylglutaryl-CoA lyase compare
Psyr_1747 -0.9 -2.7 ATP-dependent Clp protease proteolytic subunit ClpP compare
Psyr_1667 -0.9 -3.5 Colicin V production protein compare
Psyr_0303 -0.9 -2.1 Ferredoxin:Oxidoreductase FAD/NAD(P)-binding protein compare
Psyr_2990 -0.9 -2.1 conserved hypothetical protein compare
Psyr_3906 -0.9 -1.3 regulatory protein, DeoR compare
Psyr_4622 -0.9 -2.6 Nucleotidyl transferase compare
Psyr_3675 -0.9 -1.5 adenosylcobinamide kinase compare
Psyr_3179 -0.9 -1.8 DNA translocase FtsK compare
Psyr_3782 -0.9 -2.3 CsbD-like protein compare
Psyr_3886 -0.8 -1.1 methionyl-tRNA synthetase compare
Psyr_2351 -0.8 -2.5 tRNA synthetase, class-II (G, H, P and S) compare
Psyr_2150 -0.8 -2.4 protein of unknown function DUF903 compare
Psyr_1722 -0.8 -3.0 Amidohydrolase 2 compare
Psyr_1556 -0.8 -1.6 hypothetical protein compare
Psyr_2347 -0.8 -2.4 hypothetical protein compare
Psyr_0565 -0.8 -3.7 Protein of unknown function UPF0126 compare
Psyr_3450 -0.8 -3.0 Hpt compare
Psyr_0531 -0.8 -1.7 LmbE-like protein compare
Psyr_0830 -0.8 -2.9 Poly(A) polymerase compare
Psyr_0378 -0.8 -4.8 Glycosyl transferase, family 2 compare
Psyr_1872 -0.8 -2.4 conserved hypothetical protein compare
Psyr_1410 -0.8 -2.6 Holliday junction DNA helicase RuvB compare
Psyr_3489 -0.8 -2.4 FlgN compare
Psyr_2340 -0.8 -2.3 Peptidylprolyl isomerase, FKBP-type compare
Psyr_3637 -0.8 -6.0 Glycosyl transferase, family 4 compare
Psyr_2231 -0.8 -3.8 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase compare
Psyr_2779 -0.8 -1.6 Phage minor tail compare
Psyr_3290 -0.8 -2.6 3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase compare
Psyr_2590 -0.8 -1.8 Periplasmic binding protein compare
Psyr_1094 -0.8 -2.2 cold-shock DNA-binding protein family compare
Psyr_1868 -0.8 -3.7 hypothetical protein compare
Psyr_0635 -0.8 -1.1 MaoC-like dehydratase compare
Psyr_1138 -0.8 -0.7 GCN5-related N-acetyltransferase compare
Psyr_4262 -0.8 -1.1 lipoprotein, putative compare
Psyr_1864 -0.8 -2.8 spermidine synthase compare
Psyr_4460 -0.8 -1.2 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II compare
Psyr_3282 -0.8 -3.3 transcriptional regulator, TetR family compare
Psyr_2364 -0.8 -3.6 conserved hypothetical protein compare
Psyr_1227 -0.8 -1.9 Queuosine biosynthesis protein compare
Psyr_0914 -0.8 -4.4 Glycosyl transferase, group 1 compare
Psyr_0385 -0.8 -1.6 phosphoribosyl-ATP pyrophosphatase compare
Psyr_1553 -0.8 -2.5 hypothetical protein compare
Psyr_4902 -0.8 -1.8 Protein of unknown function DUF495 compare
Psyr_3284 -0.8 -2.1 SOS cell division inhibitor SulA compare
Psyr_1816 -0.8 -2.3 transcriptional regulator, GntR family compare
Psyr_2508 -0.8 -2.4 transcriptional regulator, IclR family compare
Psyr_3680 -0.7 -2.6 hydrogenobyrinic acid a,c-diamide synthase (glutamine-hydrolysing) / cobyrinate a,c-diamide synthase compare
Psyr_3111 -0.7 -2.1 transcriptional regulator, LysR family compare
Psyr_1549 -0.7 -3.6 lipoprotein, putative compare
Psyr_1953 -0.7 -1.1 conserved hypothetical protein compare
Psyr_2537 -0.7 -1.7 conserved hypothetical protein compare
Psyr_3198 -0.7 -1.4 NADH dehydrogenase subunit B compare
Psyr_3547 -0.7 -3.6 transcriptional regulator, TetR family compare
Psyr_1017 -0.7 -1.7 type III effector HopJ1 compare
Psyr_0524 -0.7 -1.6 Lipopolysaccharide kinase compare
Psyr_4752 -0.7 -2.6 Insulinase-like:Peptidase M16, C-terminal compare
Psyr_3644 -0.7 -2.1 prephenate dehydrogenase compare
Psyr_0920 -0.7 -6.2 Glycosyl transferase, group 1 compare
Psyr_2739 -0.7 -2.7 ThiJ/PfpI compare
Psyr_4490 -0.7 -1.0 transcriptional regulator, DeoR family compare
Psyr_2887 -0.7 -1.2 Endoribonuclease L-PSP compare
Psyr_4408 -0.7 -4.1 Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal:Histidine kinase:Histidine kinase compare
Psyr_3516 -0.7 -2.7 Protein of unknown function DUF1338 compare
Psyr_3094 -0.7 -4.0 Periplasmic binding protein compare
Psyr_2227 -0.7 -1.9 conserved hypothetical protein compare
Psyr_2540 -0.7 -1.3 Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal compare
Psyr_4845 -0.7 -1.8 conserved hypothetical protein compare
Psyr_3427 -0.7 -1.8 conserved hypothetical protein compare
Psyr_4774 -0.7 -0.9 Hypothetical protein compare
Psyr_3581 -0.7 -3.3 ribosomal large subunit pseudouridine synthase B compare
Psyr_0202 -0.7 -3.6 transcriptional regulator, LysR family compare
Psyr_0215 -0.7 -4.8 Exodeoxyribonuclease III xth compare
Psyr_4416 -0.7 -1.6 precorrin-8X methylmutase compare
Psyr_3854 -0.7 -0.8 OmpA/MotB compare
Psyr_0831 -0.7 -1.2 Two-component response regulator CbrB compare
Psyr_5102 -0.7 -1.1 ABC transporter compare
Psyr_0475 -0.7 -1.8 Protein of unknown function YGGT compare
Psyr_3103 -0.7 -2.9 phosphate ABC transporter ATP-binding protein, PhoT family compare
Psyr_0983 -0.7 -3.1 Protein of unknown function DUF159 compare
Psyr_3374 -0.7 -1.3 Heavy metal response regulator compare
Psyr_0666 -0.7 -2.3 transport system permease protein compare
Psyr_0545 -0.7 -1.9 Permease for cytosine/purines, uracil, thiamine, allantoin compare
Psyr_2840 -0.7 -2.5 hypothetical protein compare
Psyr_1663 -0.7 -2.1 phosphoribosylanthranilate isomerase compare
Psyr_2592 -0.7 -2.2 transport system permease protein compare
Psyr_4580 -0.7 -1.9 anthranilate phosphoribosyltransferase compare
Psyr_5065 -0.7 -3.8 ATP-dependent DNA helicase UvrD compare
Psyr_2927 -0.6 -1.7 transcriptional regulator, TetR family compare
Psyr_0533 -0.6 -2.8 conserved hypothetical protein compare
Psyr_1748 -0.6 -2.4 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Psyr_3051 -0.6 -1.4 transcriptional regulator, LysR family compare
Psyr_1719 -0.6 -1.0 conserved hypothetical protein compare
Psyr_3698 -0.6 -2.5 Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal:Hpt compare
Psyr_2668 -0.6 -2.6 Helix-turn-helix, Fis-type compare
Psyr_1234 -0.6 -2.0 RNA methyltransferase TrmH, group 1 compare
Psyr_0575 -0.6 -1.4 protease FtsH subunit HflC compare
Psyr_1458 -0.6 -1.2 hypothetical protein compare
Psyr_1614 -0.6 -0.7 lipid A biosynthesis acyltransferase compare
Psyr_3014 -0.6 -2.0 protoporphyrin IX magnesium-chelatase compare
Psyr_1717 -0.6 -1.2 TPR repeat:von Willebrand factor, type A compare
Psyr_1885 -0.6 -0.8 hypothetical protein compare
Psyr_2872 -0.6 -1.4 hypothetical protein compare
Psyr_0405 -0.6 -2.3 Pilus assembly protein, PilO compare
Psyr_2180 -0.6 -2.5 transcriptional regulator, LysR family compare
Psyr_1249 -0.6 -2.0 histidyl-tRNA synthetase compare
Psyr_1751 -0.6 -2.2 PpiC-type peptidyl-prolyl cis-trans isomerase compare
Psyr_0633 -0.6 -2.3 conserved hypothetical protein compare
Psyr_4380 -0.6 -2.0 translation initiation factor 1 (eIF-1/SUI1) compare


Specific Phenotypes

None in this experiment

For Pseudomonas syringae pv. syringae B728a in stress experiments

For stress Veratrine hydrochloride across organisms