Experiment set9IT003 for Pseudomonas syringae pv. syringae B728a

Compare to:

KB with Dimethyl Sulfoxide 1.25 vol%

200 most important genes:

  gene name fitness t score description  
Psyr_0951 -4.5 -5.1 UBA/THIF-type NAD/FAD binding fold:MoeZ/MoeB compare
Psyr_4740 -4.2 -8.4 thiazole-phosphate synthase compare
Psyr_1544 -3.9 -6.0 SirA-like protein compare
Psyr_4203 -3.8 -4.1 SsrA-binding protein compare
Psyr_4340 -3.4 -12.1 phosphomethylpyrimidine kinase, putative compare
Psyr_4687 -3.3 -11.1 biotin synthase compare
Psyr_4341 -3.0 -8.6 thiamine-phosphate diphosphorylase compare
Psyr_0034 -3.0 -5.3 tryptophan synthase, beta chain compare
Psyr_0033 -3.0 -2.8 tryptophan synthase, alpha chain compare
Psyr_1373 -2.9 -4.7 Peptidoglycan-binding LysM:Peptidase M23B compare
Psyr_4091 -2.8 -5.9 8-oxo-dGTPase compare
Psyr_1613 -2.6 -5.0 septum site-determining protein MinC compare
Psyr_2980 -2.3 -4.3 UDP-glucose pyrophosphorylase compare
Psyr_0475 -2.2 -4.6 Protein of unknown function YGGT compare
Psyr_4686 -2.2 -8.0 8-amino-7-oxononanoate synthase compare
Psyr_0454 -2.1 -7.2 adenosylmethionine-8-amino-7-oxononanoate aminotransferase apoenzyme compare
Psyr_1953 -2.1 -2.6 conserved hypothetical protein compare
Psyr_4683 -2.1 -5.8 dethiobiotin synthase compare
Psyr_4684 -2.0 -4.2 biotin synthesis protein BioC compare
Psyr_0303 -1.8 -3.3 Ferredoxin:Oxidoreductase FAD/NAD(P)-binding protein compare
Psyr_3419 -1.8 -5.0 4Fe-4S ferredoxin, iron-sulfur binding protein compare
Psyr_0849 -1.7 -9.3 CDP-diacylglycerol--serine O-phosphatidyltransferase compare
Psyr_4519 -1.7 -6.2 General substrate transporter:Major facilitator superfamily compare
Psyr_1747 -1.7 -5.8 ATP-dependent Clp protease proteolytic subunit ClpP compare
Psyr_4151 -1.7 -1.9 Phosphocarrier HPr protein compare
Psyr_4115 -1.7 -3.7 phosphoheptose isomerase compare
Psyr_3202 -1.7 -2.5 NADH dehydrogenase subunit G compare
Psyr_0575 -1.6 -3.4 protease FtsH subunit HflC compare
Psyr_3193 -1.6 -3.0 Transcription factor jumonji, jmjC compare
Psyr_3289 -1.6 -4.2 3-ketoacyl-CoA thiolase compare
Psyr_0835 -1.6 -5.3 transcriptional regulator, TraR/DksA family compare
Psyr_4627 -1.5 -2.8 dimethyladenosine transferase compare
Psyr_5135 -1.5 -0.8 Protein of unknown function DUF37 compare
Psyr_3701 -1.5 -2.1 thioredoxin, putative compare
Psyr_0571 -1.5 -3.8 tRNA isopentenyltransferase compare
Psyr_4141 -1.5 -4.1 ABC transporter compare
Psyr_1910 -1.5 -4.8 VacJ-like lipoprotein compare
Psyr_0487 -1.4 -2.4 glutathione synthase compare
Psyr_3208 -1.4 -2.0 NADH dehydrogenase subunit M compare
Psyr_4991 -1.4 -2.1 hypothetical protein compare
Psyr_0574 -1.4 -5.1 protease FtsH subunit HflK compare
Psyr_4512 -1.4 -7.2 putative phage-related protein compare
Psyr_5133 -1.4 -3.8 tRNA modification GTPase trmE compare
Psyr_2514 -1.4 -3.4 ABC transporter compare
Psyr_2141 -1.3 -2.7 hypothetical protein compare
Psyr_1751 -1.3 -3.6 PpiC-type peptidyl-prolyl cis-trans isomerase compare
Psyr_4362 -1.3 -2.5 Rare lipoprotein A compare
Psyr_3676 -1.3 -4.4 adenosylcobyric acid synthase (glutamine-hydrolysing) compare
Psyr_4158 -1.3 -7.4 conserved hypothetical protein compare
Psyr_2593 -1.3 -3.1 ABC transporter compare
Psyr_1371 -1.3 -5.5 5'-nucleotidase / exopolyphosphatase / 3'-nucleotidase compare
Psyr_5067 -1.3 -4.0 conserved hypothetical protein compare
Psyr_4893 -1.2 -1.0 imidazole glycerol phosphate synthase subunit hisF compare
Psyr_3013 -1.2 -1.9 magnesium chelatase subunit ChlD compare
Psyr_0529 -1.2 -3.8 Glycosyl transferase, group 1 compare
Psyr_3287 -1.2 -1.8 DNA topoisomerase I compare
Psyr_1410 -1.2 -3.3 Holliday junction DNA helicase RuvB compare
Psyr_0282 -1.2 -3.2 Binding-protein-dependent transport systems inner membrane component compare
Psyr_0917 -1.2 -7.1 ABC-2 compare
Psyr_4139 -1.2 -3.8 Mce4/Rv3499c/MTV023.06c protein compare
Psyr_1419 -1.2 -3.5 preQ(0) biosynthesis protein QueC compare
Psyr_3581 -1.2 -4.5 ribosomal large subunit pseudouridine synthase B compare
Psyr_2245 -1.2 -1.8 conserved domain protein compare
Psyr_2591 -1.2 -4.5 transport system permease protein compare
Psyr_0041 -1.1 -3.8 Protein of unknown function DUF1161 compare
Psyr_2990 -1.1 -2.5 conserved hypothetical protein compare
Psyr_4194 -1.1 -3.0 DnaJ central region:Heat shock protein DnaJ, N-terminal:Chaperone DnaJ, C-terminal compare
Psyr_0531 -1.1 -2.4 LmbE-like protein compare
Psyr_1458 -1.1 -3.5 hypothetical protein compare
Psyr_3791 -1.1 -2.7 Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal compare
Psyr_2221 -1.1 -1.7 sarcosine oxidase, gamma subunit compare
Psyr_0936 -1.0 -6.8 Glycosyl transferase, group 1 compare
Psyr_4138 -1.0 -3.6 Toluene tolerance compare
Psyr_4566 -1.0 -5.5 Peptidase M23B compare
Psyr_2636 -1.0 -2.4 TspO/MBR-related protein compare
Psyr_3672 -1.0 -2.0 cobalamin-5'-phosphate synthase compare
Psyr_2588 -1.0 -1.8 HpcH/HpaI aldolase compare
Psyr_0918 -1.0 -7.3 ABC transporter compare
Psyr_1663 -1.0 -2.6 phosphoribosylanthranilate isomerase compare
Psyr_3640 -1.0 -1.9 conserved hypothetical protein compare
Psyr_2854 -1.0 -2.6 conserved hypothetical protein compare
Psyr_0372 -1.0 -1.6 CDS compare
Psyr_2897 -1.0 -4.0 regulatory protein, LuxR:Response regulator receiver compare
Psyr_3933 -1.0 -1.9 conserved hypothetical protein compare
Psyr_1556 -1.0 -2.2 hypothetical protein compare
Psyr_0199 -1.0 -2.4 Glutathione-dependent formaldehyde-activating, GFA compare
Psyr_0255 -1.0 -2.0 glutamate-cysteine ligase compare
Psyr_1017 -0.9 -2.2 type III effector HopJ1 compare
Psyr_2582 -0.9 -5.1 TonB-dependent siderophore receptor compare
Psyr_1247 -0.9 -1.3 conserved hypothetical protein compare
Psyr_3681 -0.9 -1.9 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
Psyr_5132 -0.9 -2.3 Glucose-inhibited division protein A subfamily compare
Psyr_0565 -0.9 -3.6 Protein of unknown function UPF0126 compare
Psyr_3837 -0.9 -1.9 conserved hypothetical protein compare
Psyr_4736 -0.9 -1.6 conserved hypothetical protein compare
Psyr_4300 -0.9 -2.6 DNA polymerase III, epsilon subunit compare
Psyr_2668 -0.9 -2.9 Helix-turn-helix, Fis-type compare
Psyr_1796 -0.9 -2.0 GCN5-related N-acetyltransferase compare
Psyr_4622 -0.9 -3.4 Nucleotidyl transferase compare
Psyr_2688 -0.9 -2.8 conserved hypothetical protein compare
Psyr_2347 -0.9 -2.6 hypothetical protein compare
Psyr_1688 -0.9 -1.6 Protein of unknown function DUF1315 compare
Psyr_1530 -0.9 -1.6 hypothetical protein compare
Psyr_4316 -0.9 -2.2 conserved hypothetical protein compare
Psyr_3427 -0.9 -2.0 conserved hypothetical protein compare
Psyr_3841 -0.9 -2.2 conserved hypothetical protein compare
Psyr_0826 -0.9 -3.7 glucose-6-phosphate isomerase compare
Psyr_2143 -0.9 -1.4 delta1-piperideine 2-carboxylate reductase compare
Psyr_0393 -0.9 -2.8 Protein of unknown function DUF971 compare
Psyr_2067 -0.9 -1.3 ABC transporter compare
Psyr_3146 -0.9 -1.2 general secretion pathway protein J, putative compare
Psyr_3665 -0.9 -3.0 conserved hypothetical protein compare
Psyr_2592 -0.9 -2.1 transport system permease protein compare
Psyr_3842 -0.9 -3.8 SNF2-related:Helicase, C-terminal:Type III restriction enzyme, res subunit compare
Psyr_3031 -0.9 -2.4 Thiolase compare
Psyr_0014 -0.8 -0.8 lipid A biosynthesis acyltransferase compare
Psyr_3055 -0.8 -1.4 Aminoglycoside phosphotransferase compare
Psyr_4361 -0.8 -2.2 penicillin-binding protein 6, Serine peptidase, MEROPS family S11 compare
Psyr_0916 -0.8 -4.9 GDP-mannose 4,6-dehydratase compare
Psyr_2088 -0.8 -1.3 2-methylaconitate cis-trans isomerase compare
Psyr_1667 -0.8 -2.7 Colicin V production protein compare
Psyr_0838 -0.8 -1.4 Rieske [2Fe-2S] region compare
Psyr_3288 -0.8 -1.5 conserved hypothetical protein compare
Psyr_2386 -0.8 -1.4 hypothetical protein compare
Psyr_2392 -0.8 -2.7 conserved hypothetical protein compare
Psyr_3952 -0.8 -1.8 conserved hypothetical protein compare
Psyr_4598 -0.8 -1.7 lipoprotein, putative compare
Psyr_4089 -0.8 -3.4 PAS compare
Psyr_4420 -0.8 -2.8 precorrin-6A reductase compare
Psyr_1140 -0.8 -1.8 Disulfide bond formation protein DsbB compare
Psyr_3290 -0.8 -2.3 3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase compare
Psyr_2150 -0.8 -1.8 protein of unknown function DUF903 compare
Psyr_1372 -0.8 -3.0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
Psyr_4407 -0.8 -1.9 phosphoribosylamine--glycine ligase compare
Psyr_2266 -0.8 -1.8 Binding-protein-dependent transport systems inner membrane component compare
Psyr_0378 -0.8 -4.2 Glycosyl transferase, family 2 compare
Psyr_1907 -0.8 -1.5 GTP cyclohydrolase I compare
Psyr_1952 -0.7 -1.4 hypothetical protein compare
Psyr_0385 -0.7 -1.6 phosphoribosyl-ATP pyrophosphatase compare
Psyr_1198 -0.7 -1.8 type III secretion protein HrpF compare
Psyr_3020 -0.7 -1.6 precorrin-4 C11-methyltransferase compare
Psyr_2169 -0.7 -2.4 transcriptional regulator, MerR family compare
Psyr_1024 -0.7 -1.4 Flavodoxin/nitric oxide synthase compare
Psyr_3698 -0.7 -2.4 Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal:Hpt compare
Psyr_4843 -0.7 -2.3 NUDIX hydrolase compare
Psyr_0444 -0.7 -0.9 Malonate decarboxylase delta subunit compare
Psyr_4015 -0.7 -1.9 conserved domain protein compare
Psyr_2531 -0.7 -1.7 transcriptional regulator, LysR family compare
Psyr_1887 -0.7 -1.6 CDS compare
Psyr_3674 -0.7 -1.7 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase compare
Psyr_3179 -0.7 -1.3 DNA translocase FtsK compare
Psyr_3374 -0.7 -1.7 Heavy metal response regulator compare
Psyr_4470 -0.7 -1.8 ABC transporter compare
Psyr_0983 -0.7 -3.1 Protein of unknown function DUF159 compare
Psyr_RNA28 -0.7 -1.3 tRNA-Val compare
Psyr_2265 -0.7 -2.2 Binding-protein-dependent transport systems inner membrane component compare
Psyr_2743 -0.7 -1.9 Lysine exporter protein (LYSE/YGGA) compare
Psyr_1222 -0.7 -0.7 CDS compare
Psyr_3433 -0.7 -1.4 Protein-glutamate methylesterase compare
Psyr_3904 -0.7 -3.0 Major intrinsic protein compare
Psyr_3620 -0.7 -0.9 hypothetical protein compare
Psyr_4933 -0.7 -3.8 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase compare
Psyr_5065 -0.7 -3.7 ATP-dependent DNA helicase UvrD compare
Psyr_1806 -0.7 -1.2 Ureidoglycolate hydrolase compare
Psyr_5102 -0.7 -1.8 ABC transporter compare
Psyr_0784 -0.7 -1.7 CheW-like protein compare
Psyr_1018 -0.7 -2.4 Protein of unknown function DUF1244 compare
Psyr_4660 -0.7 -1.6 Formate/nitrite transporter compare
Psyr_0215 -0.7 -4.2 Exodeoxyribonuclease III xth compare
Psyr_3463 -0.7 -1.4 Flagellar protein FliS compare
Psyr_2396 -0.7 -1.4 Tartrate dehydrogenase compare
Psyr_0914 -0.7 -3.8 Glycosyl transferase, group 1 compare
Psyr_1963 -0.7 -2.8 Cyclic peptide transporter compare
Psyr_4278 -0.7 -1.9 regulatory protein, LuxR compare
Psyr_0528 -0.6 -1.2 Carbamoyltransferase compare
Psyr_1540 -0.6 -1.8 hypothetical protein compare
Psyr_4408 -0.6 -3.2 Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal:Histidine kinase:Histidine kinase compare
Psyr_2300 -0.6 -1.9 Conserved hypothetical protein 374 compare
Psyr_0817 -0.6 -1.9 N-acetylmuramoyl-L-alanine amidase, family 2 compare
Psyr_0383 -0.6 -0.7 Twin-arginine translocation protein TatB compare
Psyr_1614 -0.6 -0.7 lipid A biosynthesis acyltransferase compare
Psyr_4100 -0.6 -2.3 D-alanine--D-alanine ligase compare
Psyr_2318 -0.6 -1.7 CDS compare
Psyr_4062 -0.6 -2.2 Pyridoxamine 5'-phosphate oxidase-related protein compare
Psyr_1588 -0.6 -1.5 Putative exonuclease, RdgC compare
Psyr_0281 -0.6 -2.0 ABC transporter compare
Psyr_3805 -0.6 -1.6 hypothetical protein compare
Psyr_3637 -0.6 -4.2 Glycosyl transferase, family 4 compare
Psyr_3886 -0.6 -1.3 methionyl-tRNA synthetase compare
Psyr_0549 -0.6 -1.5 Metallophosphoesterase compare
Psyr_1294 -0.6 -1.1 regulatory protein, LuxR:Response regulator receiver compare
Psyr_4386 -0.6 -1.1 conserved hypothetical protein compare
Psyr_3636 -0.6 -4.1 Polysaccharide biosynthesis protein CapD compare
Psyr_2620 -0.6 -0.8 RND efflux system, outer membrane lipoprotein, NodT compare
Psyr_1123 -0.6 -2.2 conserved hypothetical protein compare
Psyr_2879 -0.6 -1.1 VirK compare
Psyr_4941 -0.6 -2.1 NUDIX hydrolase compare
Psyr_1268 -0.6 -2.6 extracellular solute-binding protein, family 3:SLT compare
Psyr_2595 -0.6 -1.9 Dimethylmenaquinone methyltransferase compare
Psyr_3342 -0.6 -1.0 conserved hypothetical protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas syringae pv. syringae B728a in stress experiments

For stress Dimethyl Sulfoxide across organisms