Experiment set9H6 for Pseudomonas stutzeri RCH2

Compare to:

Nitrate/ lactate media with Nitrate 20mM

200 most important genes:

  gene name fitness t score description  
Psest_1473 -4.1 -2.8 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_1888 -3.6 -2.0 Sua5/YciO/YrdC/YwlC family protein compare
Psest_2234 -3.3 -5.5 oxygen-independent coproporphyrinogen III oxidase compare
Psest_1115 -3.1 -3.0 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 compare
Psest_0508 -3.1 -6.9 gamma-glutamyl phosphate reductase compare
Psest_1313 -3.1 -2.1 Uncharacterized conserved small protein compare
Psest_3113 -3.1 -2.1 electron transport complex, RnfABCDGE type, B subunit compare
Psest_3479 -3.0 -5.0 molybdenum cofactor synthesis domain compare
Psest_3168 -3.0 -2.0 Molybdopterin converting factor, large subunit compare
Psest_0814 -3.0 -2.0 MoxR-like ATPases compare
Psest_1724 -2.7 -3.1 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_0393 -2.7 -5.4 Methylase of chemotaxis methyl-accepting proteins compare
Psest_3092 -2.5 -1.7 ribonuclease III, bacterial compare
Psest_0826 -2.3 -6.4 Cytochrome c compare
Psest_1511 -2.3 -4.0 Predicted redox protein, regulator of disulfide bond formation compare
Psest_2324 -2.3 -10.2 hypothetical protein compare
Psest_0969 -2.3 -2.1 transcription elongation factor GreA compare
Psest_0485 -2.2 -3.3 clan AA aspartic protease, TIGR02281 family compare
Psest_1656 -2.2 -1.5 NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit compare
Psest_2325 -2.2 -6.7 alpha-L-glutamate ligase-related protein compare
Psest_2579 -2.2 -1.5 amidophosphoribosyltransferase compare
Psest_2460 -2.1 -1.6 hypothetical protein compare
Psest_2988 -2.1 -6.3 aspartate kinase, monofunctional class compare
Psest_3384 -2.0 -6.0 glutamate 5-kinase compare
Psest_0164 -1.8 -1.4 Glutaredoxin, GrxC family compare
Psest_3447 -1.8 -2.1 Uncharacterized MobA-related protein compare
Psest_1655 -1.8 -1.7 NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit compare
Psest_0209 -1.8 -2.0 membrane protein AbrB duplication compare
Psest_3170 -1.8 -4.3 molybdenum cofactor biosynthesis protein MoaC compare
Psest_1961 -1.7 -7.5 molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial compare
Psest_3226 -1.7 -1.3 Predicted membrane protein compare
Psest_0799 -1.7 -3.9 Uncharacterized protein involved in response to NO compare
Psest_2329 -1.7 -8.3 Transcriptional regulator compare
Psest_0827 -1.7 -9.0 Nitric oxide reductase large subunit compare
Psest_0575 -1.7 -1.3 HrpA-like helicases compare
Psest_0144 -1.7 -5.9 Fe-S cluster protector protein compare
Psest_4191 -1.7 -1.9 Transcriptional regulator compare
Psest_4103 -1.7 -1.9 AraC-type DNA-binding domain-containing proteins compare
Psest_2490 -1.6 -6.4 succinyl-CoA synthetase, alpha subunit compare
Psest_0958 -1.6 -3.7 Oligoketide cyclase/lipid transport protein compare
Psest_3480 -1.6 -1.9 molybdenum cofactor biosynthesis protein B, proteobacterial compare
Psest_1660 -1.6 -1.5 NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit compare
Psest_2104 -1.6 -1.1 IscR-regulated protein YhgI compare
Psest_3485 -1.6 -6.9 nitrate reductase, beta subunit compare
Psest_0953 -1.5 -5.5 iron-sulfur cluster-binding protein compare
Psest_3483 -1.5 -4.8 respiratory nitrate reductase, gamma subunit compare
Psest_0385 -1.5 -2.2 Conserved secreted protein compare
Psest_3486 -1.5 -9.6 respiratory nitrate reductase, alpha subunit compare
Psest_1997 -1.5 -2.0 6-phosphogluconolactonase compare
Psest_2067 -1.5 -1.0 ABC-type oligopeptide transport system, periplasmic component compare
Psest_3484 -1.5 -3.9 nitrate reductase molybdenum cofactor assembly chaperone compare
Psest_3554 -1.5 -2.4 Uncharacterized protein conserved in bacteria compare
Psest_0193 -1.5 -1.4 conserved hypothetical protein compare
Psest_1663 -1.5 -1.9 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes compare
Psest_2491 -1.4 -3.7 succinyl-CoA synthetase, beta subunit compare
Psest_3303 -1.4 -3.5 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_0078 -1.4 -1.3 hypothetical protein compare
Psest_0828 -1.4 -3.5 Nitric oxide reductase activation protein compare
Psest_1505 -1.4 -1.5 Organic radical activating enzymes compare
Psest_0277 -1.4 -1.3 non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family compare
Psest_1532 -1.3 -2.3 DNA recombination-dependent growth factor C compare
Psest_1249 -1.3 -3.3 serine O-acetyltransferase compare
Psest_3301 -1.3 -2.8 Predicted transcriptional regulator, BolA superfamily compare
Psest_1451 -1.3 -1.9 Uncharacterized ABC-type transport system, permease components compare
Psest_4405 -1.3 -1.2 hypothetical protein compare
Psest_4363 -1.3 -3.6 ATPases involved in chromosome partitioning compare
Psest_2809 -1.3 -1.9 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
Psest_2101 -1.3 -1.7 hypothetical protein compare
Psest_0835 -1.3 -7.3 Collagenase and related proteases compare
Psest_2566 -1.3 -1.3 Uncharacterized protein conserved in bacteria compare
Psest_1226 -1.3 -2.3 hypothetical protein compare
Psest_3767 -1.3 -2.6 tyrosine recombinase XerC compare
Psest_3488 -1.3 -2.4 Universal stress protein UspA and related nucleotide-binding proteins compare
Psest_1103 -1.2 -2.0 GTP-binding protein YchF compare
Psest_3042 -1.2 -1.1 Nitrate reductase cytochrome c-type subunit compare
Psest_0837 -1.2 -2.0 Putative lipid carrier protein compare
Psest_0501 -1.2 -2.4 Predicted nucleoside-diphosphate-sugar epimerases compare
Psest_2999 -1.2 -3.0 molybdenum ABC transporter, periplasmic molybdate-binding protein compare
Psest_4098 -1.2 -1.9 Superfamily I DNA and RNA helicases compare
Psest_2975 -1.2 -2.1 tRNA_Arg_CCT compare
Psest_0609 -1.2 -1.0 hypothetical protein compare
Psest_1292 -1.2 -3.9 monothiol glutaredoxin, Grx4 family compare
Psest_0952 -1.2 -1.5 Uncharacterized conserved protein compare
Psest_4010 -1.2 -1.3 peroxiredoxin, OsmC subfamily compare
Psest_1661 -1.2 -0.8 Membrane-associated lipoprotein involved in thiamine biosynthesis compare
Psest_3117 -1.2 -2.0 electron transport complex, RnfABCDGE type, E subunit compare
Psest_2120 -1.2 -1.8 Transcriptional regulator compare
Psest_1013 -1.2 -0.8 phosphoribosylamine--glycine ligase compare
Psest_1295 -1.2 -2.1 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_2585 -1.1 -0.9 pseudouridylate synthase I compare
Psest_1474 -1.1 -1.1 phosphoribosylaminoimidazole synthetase compare
Psest_2712 -1.1 -2.3 Surface lipoprotein compare
Psest_2240 -1.1 -1.3 hypothetical protein compare
Psest_3045 -1.1 -1.8 Cold shock proteins compare
Psest_3456 -1.1 -1.4 RNA polymerase sigma factor, sigma-70 family compare
Psest_3998 -1.1 -3.1 glutamate--cysteine ligase compare
Psest_1814 -1.1 -6.6 pseudaminic acid biosynthesis N-acetyl transferase compare
Psest_0725 -1.1 -1.4 Negative regulator of beta-lactamase expression compare
Psest_0558 -1.1 -0.8 urease, beta subunit compare
Psest_3922 -1.1 -3.0 Response regulator of citrate/malate metabolism compare
Psest_3395 -1.1 -1.2 hypothetical protein compare
Psest_0120 -1.0 -3.0 hypothetical protein compare
Psest_3014 -1.0 -1.4 cob(I)alamin adenosyltransferase compare
Psest_1204 -1.0 -1.6 Transcriptional regulators compare
Psest_3183 -1.0 -3.3 hypothetical protein compare
Psest_3482 -1.0 -2.5 Parvulin-like peptidyl-prolyl isomerase compare
Psest_3215 -1.0 -2.8 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
Psest_3270 -1.0 -1.4 probable S-adenosylmethionine-dependent methyltransferase, YraL family compare
Psest_3487 -1.0 -5.2 Nitrate/nitrite transporter compare
Psest_3921 -1.0 -1.7 Uncharacterized protein conserved in bacteria compare
Psest_3991 -1.0 -1.9 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) compare
Psest_3334 -1.0 -2.6 Integral membrane protein CcmA involved in cell shape determination compare
Psest_2122 -1.0 -0.9 Parvulin-like peptidyl-prolyl isomerase compare
Psest_2539 -1.0 -1.8 adenine phosphoribosyltransferase compare
Psest_0954 -1.0 -3.3 Fe-S oxidoreductase compare
Psest_3159 -1.0 -1.3 phosphoribosylformylglycinamidine synthase, single chain form compare
Psest_3481 -1.0 -3.1 molybdenum cofactor biosynthesis protein A, bacterial compare
Psest_3306 -1.0 -2.4 conserved hypothetical integral membrane protein compare
Psest_1659 -1.0 -1.1 NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit compare
Psest_4256 -1.0 -1.7 ABC-type transport system involved in resistance to organic solvents, ATPase component compare
Psest_1876 -1.0 -2.1 Predicted membrane protein compare
Psest_3114 -1.0 -3.4 electron transport complex, RnfABCDGE type, C subunit compare
Psest_0191 -1.0 -0.9 PAS domain S-box compare
Psest_2225 -1.0 -1.6 Diacylglycerol kinase compare
Psest_2810 -1.0 -2.7 5'/3'-nucleotidase SurE compare
Psest_4054 -0.9 -2.0 alkanesulfonate monooxygenase, FMNH(2)-dependent compare
Psest_1510 -0.9 -1.9 Putative Zn-dependent protease, contains TPR repeats compare
Psest_1322 -0.9 -1.5 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases compare
Psest_1012 -0.9 -1.2 Signal transduction histidine kinase compare
Psest_4061 -0.9 -2.5 sulfate ABC transporter, permease protein CysT compare
Psest_4219 -0.9 -1.2 DNA polymerase I compare
Psest_0514 -0.9 -3.0 lytic murein transglycosylase B compare
Psest_1496 -0.9 -0.8 Holliday junction DNA helicase, RuvA subunit compare
Psest_3810 -0.9 -0.6 orotate phosphoribosyltransferase compare
Psest_2278 -0.9 -2.0 coenzyme PQQ biosynthesis protein PqqD compare
Psest_3000 -0.9 -3.4 molybdate ABC transporter, permease protein compare
Psest_2718 -0.9 -1.0 hypothetical protein compare
Psest_1197 -0.9 -2.8 Ureidoglycolate hydrolase compare
Psest_1804 -0.9 -1.1 Superfamily II DNA and RNA helicases compare
Psest_1516 -0.9 -1.4 Uncharacterized lipoprotein compare
Psest_0276 -0.9 -2.9 putative oxygen-independent coproporphyrinogen III oxidase compare
Psest_1657 -0.9 -0.8 NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit compare
Psest_3307 -0.9 -3.1 ABC-type transport system involved in resistance to organic solvents, ATPase component compare
Psest_2545 -0.9 -1.6 recombination protein RecR compare
Psest_2538 -0.9 -0.8 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases compare
Psest_0243 -0.9 -0.6 hypothetical protein compare
Psest_2671 -0.9 -1.2 Transcriptional regulator compare
Psest_1506 -0.9 -2.3 queuosine biosynthesis protein QueC compare
Psest_2651 -0.9 -1.4 DNA topoisomerase I, bacterial compare
Psest_3973 -0.9 -1.2 Anti-sigma regulatory factor (Ser/Thr protein kinase) compare
Psest_1037 -0.8 -1.4 acetolactate synthase, small subunit compare
Psest_2945 -0.8 -0.8 septum site-determining protein MinC compare
Psest_1149 -0.8 -1.7 Protein affecting phage T7 exclusion by the F plasmid compare
Psest_2743 -0.8 -1.8 Methylase involved in ubiquinone/menaquinone biosynthesis compare
Psest_3737 -0.8 -2.3 Putative threonine efflux protein compare
Psest_2253 -0.8 -1.4 small redox-active disulfide protein 2 compare
Psest_3490 -0.8 -1.4 Signal transduction histidine kinase, nitrate/nitrite-specific compare
Psest_2001 -0.8 -0.9 2-phosphoglycolate phosphatase, prokaryotic compare
Psest_2715 -0.8 -2.7 ABC-type polysaccharide/polyol phosphate export systems, permease component compare
Psest_2911 -0.8 -1.2 Protein of unknown function (DUF2945). compare
Psest_1326 -0.8 -1.8 Uncharacterized conserved protein compare
Psest_1884 -0.8 -1.2 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_2933 -0.8 -3.7 Signal transduction histidine kinase compare
Psest_2048 -0.8 -1.9 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_1611 -0.8 -2.1 Beta-lactamase class D compare
Psest_2119 -0.8 -2.0 Glycine/D-amino acid oxidases (deaminating) compare
Psest_2344 -0.8 -1.6 Methyl-accepting chemotaxis protein compare
Psest_2855 -0.8 -1.0 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
Psest_1520 -0.8 -1.6 hypothetical protein compare
Psest_1518 -0.8 -1.1 tRNA_Ser_CGA compare
Psest_0785 -0.8 -1.5 Thioredoxin reductase compare
Psest_0836 -0.8 -2.8 Collagenase and related proteases compare
Psest_0296 -0.8 -3.4 glutathione synthetase, prokaryotic compare
Psest_3762 -0.8 -1.7 iron donor protein CyaY compare
Psest_3489 -0.8 -4.0 hypothetical protein compare
Psest_0310 -0.8 -1.2 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family compare
Psest_1320 -0.8 -3.1 phosphate/phosphite/phosphonate ABC transporters, periplasmic binding protein compare
Psest_0106 -0.8 -2.8 malonate decarboxylase, gamma subunit compare
Psest_2748 -0.7 -1.3 Transcriptional regulator compare
Psest_2624 -0.7 -1.6 hypothetical protein compare
Psest_0697 -0.7 -1.4 ribosomal protein L9 compare
Psest_4209 -0.7 -1.4 Uncharacterized conserved small protein compare
Psest_0796 -0.7 -1.4 ABC-type transport system involved in multi-copper enzyme maturation, permease component compare
Psest_4314 -0.7 -2.0 ABC-type metal ion transport system, ATPase component compare
Psest_4145 -0.7 -1.7 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) compare
Psest_2591 -0.7 -1.3 3-isopropylmalate dehydratase, large subunit compare
Psest_1293 -0.7 -1.0 VanZ like family. compare
Psest_0515 -0.7 -1.2 rare lipoprotein A compare
Psest_3458 -0.7 -1.6 hypothetical protein compare
Psest_1392 -0.7 -1.5 ABC-type uncharacterized transport systems, ATPase components compare
Psest_0067 -0.7 -1.4 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain compare
Psest_3191 -0.7 -1.0 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases compare
Psest_1206 -0.7 -1.8 ABC-type Mn2+/Zn2+ transport systems, permease components compare
Psest_1160 -0.7 -1.8 Uncharacterized conserved protein compare
Psest_3647 -0.7 -2.1 Indole-3-glycerol phosphate synthase compare
Psest_2128 -0.7 -1.8 Acyl-CoA dehydrogenases compare
Psest_1524 -0.7 -1.8 Sel1 repeat. compare
Psest_1986 -0.7 -0.7 3-phosphoshikimate 1-carboxyvinyltransferase compare
Psest_1486 -0.7 -1.3 hypothetical protein compare
Psest_0415 -0.7 -1.7 dethiobiotin synthase compare


Specific Phenotypes

None in this experiment

For Pseudomonas stutzeri RCH2 in anaerobic experiments

For anaerobic Sodium nitrate across organisms