Experiment set9H6 for Pseudomonas stutzeri RCH2

Compare to:

Nitrate/ lactate media with Nitrate 20mM

200 most detrimental genes:

  gene name fitness t score description  
Psest_2786 +1.6 2.2 Domain of unknown function (DUF3597). compare
Psest_4142 +1.3 2.2 hypothetical protein compare
Psest_1643 +1.3 2.2 hypothetical protein compare
Psest_3496 +1.2 1.9 Predicted metal-binding protein compare
Psest_0845 +1.2 0.9 hypothetical protein compare
Psest_0368 +1.2 3.0 Transcriptional regulator compare
Psest_3400 +1.1 1.6 Copper resistance protein D. compare
Psest_3377 +1.1 1.6 FKBP-type peptidyl-prolyl cis-trans isomerases 2 compare
Psest_3148 +1.1 1.6 hypothetical protein compare
Psest_3890 +1.0 1.7 Multisubunit Na+/H+ antiporter, MnhB subunit compare
Psest_2123 +0.9 1.9 fusion of gluconokinase (EC 2.7.1.12) and the small permease component of the D-gluconate TRAP transporter (from data) compare
Psest_0778 +0.9 2.9 Protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin compare
Psest_2271 +0.9 2.4 coenzyme PQQ biosynthesis protein PqqD compare
Psest_4303 +0.9 2.0 HEAT repeat. compare
Psest_4126 +0.9 1.7 Predicted peroxiredoxins compare
Psest_3519 +0.9 2.2 Uncharacterized conserved protein compare
Psest_2238 +0.9 2.2 hypothetical protein compare
Psest_1260 +0.8 3.9 type IV pilus biogenesis/stability protein PilW compare
Psest_0970 +0.8 1.7 hypothetical protein compare
Psest_2277 +0.8 2.8 coenzyme PQQ biosynthesis protein A compare
Psest_1677 +0.8 1.5 Protein-tyrosine-phosphatase compare
Psest_1215 +0.8 1.8 Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) compare
Psest_1367 +0.8 2.8 hypothetical protein compare
Psest_0844 +0.8 2.0 High-affinity Fe2+/Pb2+ permease compare
Psest_2265 +0.7 2.1 Outer membrane protein compare
Psest_3047 +0.7 1.2 methionyl-tRNA synthetase/methionyl-tRNA synthetase C-terminal region/beta chain compare
Psest_3565 +0.7 1.0 hypothetical protein compare
Psest_1166 +0.7 2.0 transcriptional regulator, ArgP family compare
Psest_0759 +0.7 1.1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT). compare
Psest_3904 +0.7 1.2 hypothetical protein compare
Psest_0568 +0.7 2.0 pseudouridine synthase compare
Psest_0316 +0.7 1.6 Cytochrome c556 compare
Psest_0520 +0.7 0.8 hypothetical protein compare
Psest_4371 +0.7 2.0 Multisubunit Na+/H+ antiporter, MnhB subunit compare
Psest_2901 +0.7 1.5 hypothetical protein compare
Psest_0842 +0.7 1.6 anaerobic ribonucleoside-triphosphate reductase activating protein compare
Psest_1354 +0.7 1.6 Uncharacterized protein conserved in bacteria compare
Psest_3048 +0.7 1.6 hypothetical protein compare
Psest_3832 +0.7 1.7 hypothetical protein compare
Psest_3247 +0.7 0.8 Uncharacterized membrane protein compare
Psest_3151 +0.7 1.2 hypothetical protein compare
Psest_2744 +0.7 0.7 Uncharacterized conserved protein compare
Psest_3348 +0.6 2.6 Uncharacterized iron-regulated protein compare
Psest_2557 +0.6 1.1 Protein of unknown function (DUF2474). compare
Psest_0563 +0.6 2.1 urea ABC transporter, ATP-binding protein UrtE compare
Psest_1647 +0.6 1.9 Lhr-like helicases compare
Psest_3984 +0.6 2.9 Methyl-accepting chemotaxis protein compare
Psest_3357 +0.6 2.0 Predicted pyrophosphatase compare
Psest_3338 +0.6 0.7 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain compare
Psest_3399 +0.6 0.4 Uncharacterized protein conserved in bacteria compare
Psest_1543 +0.6 2.5 Predicted transcription regulator, contains HTH domain (MarR family) compare
Psest_2595 +0.6 2.2 tRNA-dihydrouridine synthase compare
Psest_1185 +0.6 1.8 heavy metal response regulator compare
Psest_0497 +0.6 2.8 Flagellar motor protein compare
Psest_0737 +0.6 0.8 Cu(I)-responsive transcriptional regulator compare
Psest_1381 +0.6 2.6 Predicted alpha/beta hydrolase compare
Psest_0846 +0.6 1.2 Uncharacterized protein probably involved in high-affinity Fe2+ transport compare
Psest_4090 +0.6 1.8 diaminobutyrate acetyltransferase compare
Psest_3408 +0.6 2.3 Predicted transcriptional regulators compare
Psest_2752 +0.6 1.1 Uncharacterized protein conserved in bacteria compare
Psest_3478 +0.6 0.8 Cytochrome B561 compare
Psest_3960 +0.6 0.9 3'(2'),5'-bisphosphate nucleotidase, bacterial compare
Psest_2674 +0.6 2.1 Protein chain release factor B compare
Psest_3231 +0.6 1.1 hypothetical protein compare
Psest_0101 +0.6 2.5 Short-chain alcohol dehydrogenase of unknown specificity compare
Psest_1954 +0.6 1.4 hypothetical protein compare
Psest_3958 +0.6 1.4 Predicted Fe-S-cluster oxidoreductase compare
Psest_2429 +0.6 1.7 Predicted branched-chain amino acid permease (azaleucine resistance) compare
Psest_4265 +0.6 3.1 dTDP-4-dehydrorhamnose reductase compare
Psest_3536 +0.6 0.7 hypothetical protein compare
Psest_4009 +0.6 2.0 conserverd hypothetical protein compare
Psest_3803 +0.6 0.6 DNA repair protein radc compare
Psest_1349 +0.6 1.5 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) compare
Psest_2233 +0.6 2.4 Methyl-accepting chemotaxis protein compare
Psest_1863 +0.6 1.0 hypothetical protein compare
Psest_0141 +0.5 1.9 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain compare
Psest_3545 +0.5 1.7 clan AA aspartic protease, TIGR02281 family compare
Psest_0886 +0.5 2.2 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain compare
Psest_0675 +0.5 1.3 Predicted periplasmic lipoprotein compare
Psest_1370 +0.5 1.9 hypothetical protein compare
Psest_1070 +0.5 1.9 Predicted membrane protein compare
Psest_2017 +0.5 1.5 Predicted acyltransferase compare
Psest_0355 +0.5 0.9 Glycine cleavage system regulatory protein compare
Psest_3788 +0.5 1.9 xanthine phosphoribosyltransferase compare
Psest_2369 +0.5 1.8 Transcriptional regulator compare
Psest_1631 +0.5 0.6 Uncharacterized conserved small protein compare
Psest_2165 +0.5 1.7 Cytochrome B561 compare
Psest_0417 +0.5 1.0 Acyl-CoA dehydrogenases compare
Psest_2716 +0.5 1.5 ABC-type multidrug transport system, ATPase component compare
Psest_4342 +0.5 1.8 Putative GTPases (G3E family) compare
Psest_3203 +0.5 1.7 hypothetical protein compare
Psest_1567 +0.5 2.0 Transcriptional regulator compare
Psest_4163 +0.5 0.9 hypothetical protein compare
Psest_1734 +0.5 2.4 flagellar biosynthetic protein FliR compare
Psest_0275 +0.5 1.4 Protein of unknown function (DUF3392). compare
Psest_2561 +0.5 0.6 hypothetical protein compare
Psest_3060 +0.5 1.3 hypothetical protein compare
Psest_3086 +0.5 2.8 hypothetical protein compare
Psest_2778 +0.5 1.0 Parvulin-like peptidyl-prolyl isomerase compare
Psest_0650 +0.5 1.7 RNA polymerase sigma factor, sigma-70 family compare
Psest_2384 +0.5 1.1 Uncharacterized protein conserved in bacteria compare
Psest_2394 +0.5 1.8 TIGR01777 family protein compare
Psest_1087 +0.5 0.8 uncharacterized peroxidase-related enzyme compare
Psest_2966 +0.5 2.8 Flagellar hook capping protein compare
Psest_2973 +0.5 2.1 Flagellar biosynthesis/type III secretory pathway chaperone compare
Psest_3020 +0.5 2.1 Cell wall-associated hydrolases (invasion-associated proteins) compare
Psest_3931 +0.5 1.9 Signal transduction histidine kinase, nitrogen specific compare
Psest_1665 +0.5 1.4 hypothetical protein compare
Psest_1376 +0.5 2.6 hypothetical protein compare
Psest_4178 +0.5 1.3 hypothetical protein compare
Psest_1882 +0.5 2.0 Signal transduction histidine kinase compare
Psest_1919 +0.5 1.1 Uncharacterized membrane protein (homolog of Drosophila rhomboid) compare
Psest_2227 +0.5 1.9 hypothetical protein compare
Psest_2769 +0.5 2.2 hypothetical protein compare
Psest_3087 +0.5 1.9 Transcriptional regulator compare
Psest_4063 +0.5 1.5 sulfate ABC transporter, ATP-binding protein compare
Psest_2386 +0.5 2.1 GTP cyclohydrolase I compare
Psest_1194 +0.5 2.3 Kef-type K+ transport system, predicted NAD-binding component compare
Psest_2110 +0.5 1.2 hypothetical protein compare
Psest_1774 +0.5 1.0 Glutathione peroxidase compare
Psest_0652 +0.5 1.4 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components compare
Psest_2047 +0.5 1.3 Signal transduction histidine kinase compare
Psest_3934 +0.5 1.7 rRNA methylase, putative, group 2 compare
Psest_1951 +0.5 0.8 Uncharacterized protein conserved in bacteria compare
Psest_1632 +0.5 1.3 Predicted permeases compare
Psest_2018 +0.5 0.9 Uncharacterized conserved protein compare
Psest_2956 +0.4 1.3 Uncharacterized conserved protein compare
Psest_1179 +0.4 0.5 2-hydroxy-3-oxopropionate reductase compare
Psest_2650 +0.4 1.0 hypothetical protein compare
Psest_4411 +0.4 1.5 Phage terminase, small subunit compare
Psest_2648 +0.4 1.0 hypothetical protein compare
Psest_0240 +0.4 1.8 hypothetical protein compare
Psest_2057 +0.4 1.7 Predicted secreted protein compare
Psest_1188 +0.4 2.2 FOG: EAL domain compare
Psest_1721 +0.4 1.4 Flagellar biosynthesis/type III secretory pathway protein compare
Psest_2540 +0.4 2.0 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems compare
Psest_0047 +0.4 2.3 Predicted esterase of the alpha-beta hydrolase superfamily compare
Psest_2968 +0.4 2.6 flagellar basal-body rod protein FlgB compare
Psest_2753 +0.4 1.8 Uncharacterized protein conserved in bacteria compare
Psest_4004 +0.4 1.5 Uncharacterized conserved protein compare
Psest_1171 +0.4 1.9 nicotinate phosphoribosyltransferase compare
Psest_1837 +0.4 2.1 Endoglucanase compare
Psest_2121 +0.4 2.1 Predicted ATPase compare
Psest_2370 +0.4 0.9 Protein of unknown function (DUF1652). compare
Psest_3792 +0.4 1.0 Putative translation initiation inhibitor, yjgF family compare
Psest_2454 +0.4 0.9 Rhodanese-related sulfurtransferase compare
Psest_2594 +0.4 0.8 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_1396 +0.4 2.4 Cytosine/adenosine deaminases compare
Psest_1728 +0.4 1.8 Flagellar basal body-associated protein compare
Psest_1700 +0.4 1.1 Transcriptional regulator compare
Psest_2873 +0.4 1.4 competence/damage-inducible protein CinA C-terminal domain compare
Psest_0919 +0.4 0.9 Permeases of the drug/metabolite transporter (DMT) superfamily compare
Psest_3437 +0.4 1.2 diguanylate cyclase (GGDEF) domain compare
Psest_2100 +0.4 1.9 Predicted acyltransferases compare
Psest_0357 +0.4 0.7 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_0813 +0.4 1.3 Heme/copper-type cytochrome/quinol oxidase, subunit 3 compare
Psest_0148 +0.4 1.2 nitrate transport ATP-binding subunits C and D compare
Psest_1731 +0.4 0.9 flagellar biosynthetic protein FliO compare
Psest_3244 +0.4 1.2 Protein of unknown function (DUF2726). compare
Psest_0139 +0.4 1.6 ABC-type histidine transport system, ATPase component compare
Psest_2438 +0.4 1.8 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31) (from data) compare
Psest_1683 +0.4 1.6 MAF protein compare
Psest_3202 +0.4 1.2 Flavodoxins compare
Psest_2544 +0.4 2.0 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components compare
Psest_3361 +0.4 1.3 Uncharacterized protein conserved in bacteria compare
Psest_1056 +0.4 0.8 2-isopropylmalate synthase, bacterial type compare
Psest_0734 +0.4 1.2 RND family efflux transporter, MFP subunit compare
Psest_2962 +0.4 2.3 Flagellar basal body L-ring protein compare
Psest_1530 +0.4 1.8 Predicted membrane protein compare
Psest_2392 +0.4 2.2 PAS domain S-box/diguanylate cyclase (GGDEF) domain compare
Psest_0038 +0.4 1.9 hypothetical protein compare
Psest_2044 +0.4 1.2 ABC transporter, substrate binding protein, PQQ-dependent alcohol dehydrogenase system compare
Psest_3905 +0.4 1.5 formate dehydrogenase, alpha subunit, archaeal-type compare
Psest_4055 +0.4 2.3 ABC transporter, substrate-binding protein, aliphatic sulfonates family compare
Psest_0705 +0.4 2.7 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_1454 +0.4 1.6 ybaK/ebsC protein compare
Psest_1433 +0.4 3.0 hypothetical protein compare
Psest_1350 +0.4 2.1 Metal-dependent hydrolases of the beta-lactamase superfamily III compare
Psest_0950 +0.4 1.1 hypothetical protein compare
Psest_2337 +0.4 2.1 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component compare
Psest_3476 +0.4 0.5 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_0537 +0.4 0.8 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase compare
Psest_3543 +0.4 0.9 hypothetical protein compare
Psest_0708 +0.4 0.5 outer membrane assembly lipoprotein YfiO compare
Psest_4152 +0.4 1.3 flagellar basal-body rod protein FlgC compare
Psest_4042 +0.4 0.9 hypothetical protein compare
Psest_0767 +0.4 2.1 diguanylate cyclase (GGDEF) domain compare
Psest_1752 +0.4 0.5 Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB compare
Psest_3861 +0.4 1.4 Uncharacterized conserved protein compare
Psest_0527 +0.4 2.3 Uncharacterized conserved protein compare
Psest_2377 +0.4 1.7 Anthranilate phosphoribosyltransferase compare
Psest_3717 +0.4 1.8 Tfp pilus assembly protein PilO compare
Psest_4307 +0.4 0.9 ABC-type Zn2+ transport system, periplasmic component/surface adhesin compare
Psest_4077 +0.4 2.4 amino acid carrier protein compare
Psest_3143 +0.4 1.7 Uncharacterized protein conserved in bacteria compare
Psest_1577 +0.4 2.4 Membrane glycosyltransferase compare
Psest_1397 +0.4 0.8 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component compare
Psest_3439 +0.4 1.9 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 compare
Psest_1120 +0.4 1.4 uracil phosphoribosyltransferase compare
Psest_1303 +0.4 1.1 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas stutzeri RCH2 in anaerobic experiments

For anaerobic Sodium nitrate across organisms