Experiment set9H47 for Pseudomonas stutzeri RCH2

Compare to:

Nitrate/ lactate media with Nitrate 20mM and .05mM Tungsten

200 most important genes:

  gene name fitness t score description  
Psest_1473 -2.8 -6.6 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_2234 -2.7 -8.9 oxygen-independent coproporphyrinogen III oxidase compare
Psest_3301 -2.5 -4.7 Predicted transcriptional regulator, BolA superfamily compare
Psest_2988 -2.5 -8.1 aspartate kinase, monofunctional class compare
Psest_1999 -2.4 -1.6 pseudouridine synthase compare
Psest_2490 -2.3 -8.8 succinyl-CoA synthetase, alpha subunit compare
Psest_0814 -2.3 -2.6 MoxR-like ATPases compare
Psest_3129 -2.3 -2.1 tyrosine recombinase XerD compare
Psest_0508 -2.3 -8.1 gamma-glutamyl phosphate reductase compare
Psest_0952 -2.2 -2.1 Uncharacterized conserved protein compare
Psest_0498 -2.2 -1.5 ribosome small subunit-dependent GTPase A compare
Psest_1660 -2.2 -1.5 NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit compare
Psest_4191 -2.2 -2.6 Transcriptional regulator compare
Psest_1115 -2.1 -2.6 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 compare
Psest_3384 -2.1 -7.1 glutamate 5-kinase compare
Psest_0958 -1.9 -4.7 Oligoketide cyclase/lipid transport protein compare
Psest_2579 -1.9 -3.2 amidophosphoribosyltransferase compare
Psest_0837 -1.9 -3.0 Putative lipid carrier protein compare
Psest_0827 -1.8 -10.9 Nitric oxide reductase large subunit compare
Psest_3938 -1.8 -3.2 Uncharacterized protein conserved in bacteria compare
Psest_0212 -1.8 -2.0 exodeoxyribonuclease V, gamma subunit compare
Psest_2104 -1.7 -1.2 IscR-regulated protein YhgI compare
Psest_1295 -1.7 -3.0 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_2491 -1.7 -5.0 succinyl-CoA synthetase, beta subunit compare
Psest_1655 -1.7 -2.9 NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit compare
Psest_1082 -1.7 -2.6 Enoyl-CoA hydratase/carnithine racemase compare
Psest_1907 -1.7 -2.0 hypothetical protein compare
Psest_3881 -1.6 -2.0 hypothetical protein compare
Psest_2101 -1.6 -1.8 hypothetical protein compare
Psest_0725 -1.6 -2.1 Negative regulator of beta-lactamase expression compare
Psest_3490 -1.6 -3.4 Signal transduction histidine kinase, nitrate/nitrite-specific compare
Psest_2718 -1.5 -1.7 hypothetical protein compare
Psest_2066 -1.5 -2.6 ABC-type uncharacterized transport system, permease component compare
Psest_2953 -1.5 -1.7 Histone acetyltransferase compare
Psest_3484 -1.5 -3.6 nitrate reductase molybdenum cofactor assembly chaperone compare
Psest_0828 -1.5 -4.5 Nitric oxide reductase activation protein compare
Psest_0826 -1.5 -6.0 Cytochrome c compare
Psest_0835 -1.5 -9.5 Collagenase and related proteases compare
Psest_1920 -1.4 -1.4 Uncharacterized protein conserved in bacteria compare
Psest_2855 -1.4 -1.8 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
Psest_0830 -1.4 -6.6 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases compare
Psest_0799 -1.4 -3.5 Uncharacterized protein involved in response to NO compare
Psest_3843 -1.4 -6.4 4-hydroxybenzoate synthetase (chorismate lyase) compare
Psest_0144 -1.4 -5.6 Fe-S cluster protector protein compare
Psest_1511 -1.4 -3.6 Predicted redox protein, regulator of disulfide bond formation compare
Psest_0277 -1.4 -1.5 non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family compare
Psest_0836 -1.4 -4.7 Collagenase and related proteases compare
Psest_3117 -1.3 -2.6 electron transport complex, RnfABCDGE type, E subunit compare
Psest_3960 -1.3 -1.7 3'(2'),5'-bisphosphate nucleotidase, bacterial compare
Psest_1661 -1.3 -0.9 Membrane-associated lipoprotein involved in thiamine biosynthesis compare
Psest_3170 -1.3 -4.3 molybdenum cofactor biosynthesis protein MoaC compare
Psest_0309 -1.3 -1.2 RND family efflux transporter, MFP subunit compare
Psest_1474 -1.3 -1.2 phosphoribosylaminoimidazole synthetase compare
Psest_3367 -1.3 -1.9 translation initation factor SUI1, putative, prokaryotic compare
Psest_1961 -1.3 -7.0 molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial compare
Psest_3810 -1.2 -0.8 orotate phosphoribosyltransferase compare
Psest_3479 -1.2 -4.1 molybdenum cofactor synthesis domain compare
Psest_1012 -1.2 -1.6 Signal transduction histidine kinase compare
Psest_0515 -1.2 -2.0 rare lipoprotein A compare
Psest_1663 -1.2 -2.3 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes compare
Psest_3092 -1.2 -1.5 ribonuclease III, bacterial compare
Psest_3480 -1.2 -2.0 molybdenum cofactor biosynthesis protein B, proteobacterial compare
Psest_3296 -1.2 -1.6 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain compare
Psest_4406 -1.2 -1.8 hypothetical protein compare
Psest_3483 -1.2 -4.8 respiratory nitrate reductase, gamma subunit compare
Psest_1058 -1.1 -2.6 ribosomal-protein-alanine acetyltransferase compare
Psest_4201 -1.1 -1.9 general secretion pathway protein F compare
Psest_2711 -1.1 -1.6 PilZ domain. compare
Psest_0708 -1.1 -1.2 outer membrane assembly lipoprotein YfiO compare
Psest_0987 -1.1 -2.1 Predicted periplasmic or secreted lipoprotein compare
Psest_2585 -1.1 -1.2 pseudouridylate synthase I compare
Psest_3045 -1.1 -2.1 Cold shock proteins compare
Psest_1013 -1.1 -1.4 phosphoribosylamine--glycine ligase compare
Psest_1532 -1.1 -2.2 DNA recombination-dependent growth factor C compare
Psest_2712 -1.1 -2.8 Surface lipoprotein compare
Psest_0310 -1.1 -2.1 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family compare
Psest_3159 -1.1 -2.0 phosphoribosylformylglycinamidine synthase, single chain form compare
Psest_1873 -1.1 -1.8 Predicted permease, DMT superfamily compare
Psest_3487 -1.0 -6.1 Nitrate/nitrite transporter compare
Psest_3485 -1.0 -6.3 nitrate reductase, beta subunit compare
Psest_2999 -1.0 -3.3 molybdenum ABC transporter, periplasmic molybdate-binding protein compare
Psest_0660 -1.0 -2.7 Methyl-accepting chemotaxis protein compare
Psest_2566 -1.0 -1.3 Uncharacterized protein conserved in bacteria compare
Psest_0796 -1.0 -2.4 ABC-type transport system involved in multi-copper enzyme maturation, permease component compare
Psest_3908 -1.0 -1.6 Cytochrome c553 compare
Psest_3998 -1.0 -3.6 glutamate--cysteine ligase compare
Psest_0954 -1.0 -4.1 Fe-S oxidoreductase compare
Psest_0959 -1.0 -1.2 Uncharacterized protein conserved in bacteria compare
Psest_3486 -1.0 -7.4 respiratory nitrate reductase, alpha subunit compare
Psest_1293 -1.0 -1.3 VanZ like family. compare
Psest_3565 -1.0 -1.0 hypothetical protein compare
Psest_0821 -1.0 -5.8 Cytochrome D1 heme domain. compare
Psest_0367 -0.9 -2.0 Predicted branched-chain amino acid permease (azaleucine resistance) compare
Psest_2714 -0.9 -1.2 7-cyano-7-deazaguanine reductase compare
Psest_3662 -0.9 -1.6 DnaJ-domain-containing proteins 1 compare
Psest_0822 -0.9 -2.5 Transcriptional regulators compare
Psest_2018 -0.9 -1.5 Uncharacterized conserved protein compare
Psest_2651 -0.9 -1.7 DNA topoisomerase I, bacterial compare
Psest_2120 -0.9 -1.8 Transcriptional regulator compare
Psest_1510 -0.9 -2.0 Putative Zn-dependent protease, contains TPR repeats compare
Psest_2001 -0.9 -1.1 2-phosphoglycolate phosphatase, prokaryotic compare
Psest_1840 -0.9 -7.7 Undecaprenyl-phosphate glucose phosphotransferase compare
Psest_3816 -0.9 -1.1 DNA-directed RNA polymerase, omega subunit compare
Psest_0697 -0.9 -1.9 ribosomal protein L9 compare
Psest_1656 -0.9 -1.3 NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit compare
Psest_0087 -0.9 -2.8 hypothetical protein compare
Psest_3212 -0.9 -2.0 FKBP-type peptidyl-prolyl cis-trans isomerases 2 compare
Psest_3050 -0.8 -2.0 tRNA_Gly_CCC compare
Psest_1506 -0.8 -2.6 queuosine biosynthesis protein QueC compare
Psest_0115 -0.8 -1.1 Predicted integral membrane protein compare
Psest_2136 -0.8 -5.2 Predicted homoserine dehydrogenase compare
Psest_2423 -0.8 -3.2 Uncharacterized conserved protein compare
Psest_4145 -0.8 -2.3 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) compare
Psest_2983 -0.8 -2.0 hypothetical protein compare
Psest_3115 -0.8 -2.9 electron transport complex, RnfABCDGE type, D subunit compare
Psest_1975 -0.8 -4.0 Predicted transcriptional regulators compare
Psest_0817 -0.8 -4.3 Ethylbenzene dehydrogenase. compare
Psest_2911 -0.8 -1.5 Protein of unknown function (DUF2945). compare
Psest_4124 -0.8 -2.1 hypothetical protein compare
Psest_0296 -0.8 -4.1 glutathione synthetase, prokaryotic compare
Psest_3834 -0.8 -3.4 NAD(P)H-nitrite reductase compare
Psest_2872 -0.8 -1.0 protein RecA compare
Psest_2543 -0.8 -2.6 ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component compare
Psest_0953 -0.8 -4.1 iron-sulfur cluster-binding protein compare
Psest_3850 -0.8 -0.7 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_1659 -0.8 -1.0 NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit compare
Psest_1468 -0.8 -2.1 hypothetical protein compare
Psest_0823 -0.8 -1.5 Transcriptional regulators compare
Psest_1162 -0.7 -1.7 Spermidine synthase compare
Psest_1292 -0.7 -3.1 monothiol glutaredoxin, Grx4 family compare
Psest_2892 -0.7 -1.1 Transcriptional regulator compare
Psest_2239 -0.7 -2.5 RES domain. compare
Psest_1695 -0.7 -1.9 Tfp pilus assembly protein PilZ compare
Psest_1870 -0.7 -0.8 Transcriptional regulators compare
Psest_0820 -0.7 -2.5 hypothetical protein compare
Psest_1741 -0.7 -1.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_2624 -0.7 -1.5 hypothetical protein compare
Psest_0073 -0.7 -2.6 ABC-type multidrug transport system, ATPase and permease components compare
Psest_1752 -0.7 -1.2 Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB compare
Psest_0652 -0.7 -1.8 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components compare
Psest_0063 -0.7 -4.0 tryptophan synthase, beta subunit compare
Psest_3550 -0.7 -1.7 3,4-dihydroxy-2-butanone 4-phosphate synthase compare
Psest_1782 -0.7 -1.3 Predicted transcriptional regulators compare
Psest_1716 -0.7 -2.4 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_0831 -0.7 -0.8 hypothetical protein compare
Psest_2594 -0.7 -1.7 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_2442 -0.7 -1.3 hypothetical protein compare
Psest_1909 -0.7 -1.8 Phosphohistidine phosphatase SixA compare
Psest_3860 -0.7 -1.7 Predicted permeases compare
Psest_0325 -0.7 -5.5 Putative threonine efflux protein compare
Psest_4363 -0.7 -3.0 ATPases involved in chromosome partitioning compare
Psest_1505 -0.7 -1.0 Organic radical activating enzymes compare
Psest_3185 -0.7 -1.1 MoxR-like ATPases compare
Psest_3112 -0.7 -1.9 electron transport complex, RnfABCDGE type, A subunit compare
Psest_4134 -0.7 -1.2 Uncharacterized protein conserved in bacteria compare
Psest_2864 -0.7 -1.4 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_3307 -0.7 -2.9 ABC-type transport system involved in resistance to organic solvents, ATPase component compare
Psest_2909 -0.7 -1.5 hypothetical protein compare
Psest_1657 -0.7 -0.8 NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit compare
Psest_2544 -0.7 -3.1 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components compare
Psest_4390 -0.7 -2.5 hypothetical protein compare
Psest_1073 -0.6 -2.5 TRAP-type mannitol/chloroaromatic compound transport system, small permease component compare
Psest_2037 -0.6 -2.5 uroporphyrin-III C-methyltransferase compare
Psest_2752 -0.6 -1.4 Uncharacterized protein conserved in bacteria compare
Psest_0811 -0.6 -3.5 heme d1 biosynthesis radical SAM protein NirJ compare
Psest_3060 -0.6 -1.3 hypothetical protein compare
Psest_3114 -0.6 -2.8 electron transport complex, RnfABCDGE type, C subunit compare
Psest_0062 -0.6 -4.0 tryptophan synthase, alpha subunit compare
Psest_2848 -0.6 -2.0 Multisubunit Na+/H+ antiporter, MnhE subunit compare
Psest_1223 -0.6 -2.7 1,4-dihydroxy-2-naphthoate octaprenyltransferase compare
Psest_3191 -0.6 -1.3 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases compare
Psest_2083 -0.6 -2.3 Putative sterol carrier protein compare
Psest_4067 -0.6 -2.0 Predicted membrane protein compare
Psest_1103 -0.6 -1.5 GTP-binding protein YchF compare
Psest_2288 -0.6 -1.6 trigger factor compare
Psest_0744 -0.6 -0.7 Uncharacterized conserved protein compare
Psest_3447 -0.6 -0.8 Uncharacterized MobA-related protein compare
Psest_0969 -0.6 -0.9 transcription elongation factor GreA compare
Psest_3100 -0.6 -3.1 RNA polymerase sigma factor RpoE compare
Psest_3489 -0.6 -3.7 hypothetical protein compare
Psest_2899 -0.6 -0.9 hypothetical protein compare
Psest_2325 -0.6 -3.1 alpha-L-glutamate ligase-related protein compare
Psest_2946 -0.6 -1.3 septum site-determining protein MinD compare
Psest_0355 -0.6 -1.0 Glycine cleavage system regulatory protein compare
Psest_1197 -0.6 -2.3 Ureidoglycolate hydrolase compare
Psest_3531 -0.6 -0.6 Peptidase propeptide and YPEB domain. compare
Psest_1989 -0.6 -2.3 Transcriptional regulators compare
Psest_3865 -0.6 -1.9 Predicted integral membrane protein (DUF2269). compare
Psest_2645 -0.6 -2.8 Transcriptional regulator compare
Psest_1451 -0.6 -1.0 Uncharacterized ABC-type transport system, permease components compare
Psest_3766 -0.6 -0.7 Uncharacterized protein conserved in bacteria compare
Psest_3222 -0.6 -1.2 Putative threonine efflux protein compare
Psest_2917 -0.6 -2.4 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases compare
Psest_3322 -0.6 -4.7 TIGR02099 family protein compare
Psest_3896 -0.6 -1.2 arsenite-activated ATPase ArsA compare
Psest_0442 -0.6 -1.4 ATPases of the AAA+ class compare
Psest_1491 -0.6 -1.2 Cold shock proteins compare
Psest_2218 -0.6 -1.1 Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit compare
Psest_2626 -0.6 -1.5 Flp pilus assembly protein CpaB compare
Psest_2981 -0.6 -0.8 sodium pump decarboxylases, gamma subunit compare


Specific Phenotypes

None in this experiment

For Pseudomonas stutzeri RCH2 in anaerobic experiments

For anaerobic Sodium nitrate across organisms