Experiment set9H46 for Pseudomonas stutzeri RCH2

Compare to:

Nitrate/ lactate media with Nitrate 20mM and .05mM Tungsten

200 most important genes:

  gene name fitness t score description  
Psest_1473 -3.0 -6.1 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_2234 -2.7 -8.0 oxygen-independent coproporphyrinogen III oxidase compare
Psest_1656 -2.4 -1.6 NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit compare
Psest_3168 -2.2 -2.1 Molybdopterin converting factor, large subunit compare
Psest_2490 -2.2 -8.3 succinyl-CoA synthetase, alpha subunit compare
Psest_0508 -2.2 -7.8 gamma-glutamyl phosphate reductase compare
Psest_3129 -2.2 -2.0 tyrosine recombinase XerD compare
Psest_2988 -2.1 -7.2 aspartate kinase, monofunctional class compare
Psest_0828 -2.1 -5.5 Nitric oxide reductase activation protein compare
Psest_3092 -2.0 -2.3 ribonuclease III, bacterial compare
Psest_0827 -2.0 -11.1 Nitric oxide reductase large subunit compare
Psest_0958 -2.0 -4.2 Oligoketide cyclase/lipid transport protein compare
Psest_3384 -2.0 -6.9 glutamate 5-kinase compare
Psest_0277 -2.0 -1.8 non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family compare
Psest_1496 -1.9 -1.2 Holliday junction DNA helicase, RuvA subunit compare
Psest_0814 -1.8 -2.1 MoxR-like ATPases compare
Psest_2491 -1.8 -4.6 succinyl-CoA synthetase, beta subunit compare
Psest_0066 -1.8 -2.4 Protein of unknown function (DUF3060). compare
Psest_1660 -1.7 -1.6 NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit compare
Psest_1655 -1.7 -2.5 NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit compare
Psest_2104 -1.7 -1.1 IscR-regulated protein YhgI compare
Psest_3484 -1.7 -4.7 nitrate reductase molybdenum cofactor assembly chaperone compare
Psest_0826 -1.6 -6.0 Cytochrome c compare
Psest_1657 -1.6 -1.1 NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit compare
Psest_2229 -1.6 -2.3 Uncharacterized protein conserved in bacteria compare
Psest_2579 -1.6 -3.3 amidophosphoribosyltransferase compare
Psest_1999 -1.6 -1.3 pseudouridine synthase compare
Psest_0144 -1.6 -6.8 Fe-S cluster protector protein compare
Psest_2953 -1.6 -2.0 Histone acetyltransferase compare
Psest_0836 -1.5 -5.1 Collagenase and related proteases compare
Psest_0952 -1.5 -2.0 Uncharacterized conserved protein compare
Psest_2945 -1.5 -1.3 septum site-determining protein MinC compare
Psest_1961 -1.5 -7.1 molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial compare
Psest_2304 -1.4 -1.3 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family compare
Psest_1111 -1.4 -2.2 Flp pilus assembly protein TadD, contains TPR repeats compare
Psest_0835 -1.4 -9.1 Collagenase and related proteases compare
Psest_3170 -1.4 -4.5 molybdenum cofactor biosynthesis protein MoaC compare
Psest_2566 -1.4 -1.6 Uncharacterized protein conserved in bacteria compare
Psest_0257 -1.3 -2.6 Predicted Zn-dependent peptidases compare
Psest_2434 -1.3 -2.7 Protein of unknown function (DUF2892). compare
Psest_0799 -1.3 -2.1 Uncharacterized protein involved in response to NO compare
Psest_1295 -1.3 -2.7 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_0515 -1.3 -1.9 rare lipoprotein A compare
Psest_3113 -1.3 -1.6 electron transport complex, RnfABCDGE type, B subunit compare
Psest_1661 -1.3 -0.9 Membrane-associated lipoprotein involved in thiamine biosynthesis compare
Psest_2037 -1.3 -3.7 uroporphyrin-III C-methyltransferase compare
Psest_3485 -1.3 -7.0 nitrate reductase, beta subunit compare
Psest_3483 -1.2 -4.5 respiratory nitrate reductase, gamma subunit compare
Psest_0954 -1.2 -4.4 Fe-S oxidoreductase compare
Psest_4163 -1.2 -2.4 hypothetical protein compare
Psest_4098 -1.2 -2.4 Superfamily I DNA and RNA helicases compare
Psest_1013 -1.2 -1.1 phosphoribosylamine--glycine ligase compare
Psest_1292 -1.2 -4.3 monothiol glutaredoxin, Grx4 family compare
Psest_4191 -1.2 -1.9 Transcriptional regulator compare
Psest_3810 -1.2 -0.8 orotate phosphoribosyltransferase compare
Psest_1511 -1.2 -3.1 Predicted redox protein, regulator of disulfide bond formation compare
Psest_2243 -1.1 -1.2 glyceraldehyde-3-phosphate dehydrogenase, type I compare
Psest_3850 -1.1 -1.0 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_1659 -1.1 -1.2 NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit compare
Psest_0120 -1.1 -3.8 hypothetical protein compare
Psest_1474 -1.1 -1.6 phosphoribosylaminoimidazole synthetase compare
Psest_0466 -1.1 -1.8 Lipopolysaccharide kinase (Kdo/WaaP) family. compare
Psest_0296 -1.1 -5.1 glutathione synthetase, prokaryotic compare
Psest_3486 -1.1 -8.0 respiratory nitrate reductase, alpha subunit compare
Psest_3767 -1.1 -2.8 tyrosine recombinase XerC compare
Psest_1679 -1.1 -1.2 ribonuclease, Rne/Rng family compare
Psest_1505 -1.0 -1.5 Organic radical activating enzymes compare
Psest_3159 -1.0 -1.9 phosphoribosylformylglycinamidine synthase, single chain form compare
Psest_2407 -1.0 -2.2 nitrite reductase [NAD(P)H], small subunit compare
Psest_1516 -1.0 -1.7 Uncharacterized lipoprotein compare
Psest_0821 -1.0 -5.7 Cytochrome D1 heme domain. compare
Psest_3479 -1.0 -3.4 molybdenum cofactor synthesis domain compare
Psest_2424 -1.0 -1.9 K+ transport systems, NAD-binding component compare
Psest_0823 -1.0 -2.3 Transcriptional regulators compare
Psest_2101 -1.0 -1.5 hypothetical protein compare
Psest_0795 -1.0 -2.6 ABC-type multidrug transport system, ATPase component compare
Psest_0575 -1.0 -1.0 HrpA-like helicases compare
Psest_0193 -1.0 -1.1 conserved hypothetical protein compare
Psest_3306 -1.0 -2.7 conserved hypothetical integral membrane protein compare
Psest_2136 -1.0 -4.8 Predicted homoserine dehydrogenase compare
Psest_3843 -1.0 -4.7 4-hydroxybenzoate synthetase (chorismate lyase) compare
Psest_3998 -1.0 -3.2 glutamate--cysteine ligase compare
Psest_3301 -1.0 -2.1 Predicted transcriptional regulator, BolA superfamily compare
Psest_0511 -1.0 -1.1 rRNA large subunit m3Psi methyltransferase RlmH compare
Psest_3780 -1.0 -2.3 Transcriptional regulator compare
Psest_3080 -0.9 -1.7 AraC-type DNA-binding domain-containing proteins compare
Psest_0817 -0.9 -4.8 Ethylbenzene dehydrogenase. compare
Psest_3647 -0.9 -3.3 Indole-3-glycerol phosphate synthase compare
Psest_1625 -0.9 -2.2 hypothetical protein compare
Psest_1506 -0.9 -2.6 queuosine biosynthesis protein QueC compare
Psest_3937 -0.9 -1.5 ATP-dependent protease HslVU, ATPase subunit compare
Psest_1840 -0.9 -7.7 Undecaprenyl-phosphate glucose phosphotransferase compare
Psest_3117 -0.9 -2.0 electron transport complex, RnfABCDGE type, E subunit compare
Psest_1167 -0.9 -0.8 hypothetical protein compare
Psest_2711 -0.9 -1.8 PilZ domain. compare
Psest_1185 -0.9 -2.0 heavy metal response regulator compare
Psest_1012 -0.9 -1.6 Signal transduction histidine kinase compare
Psest_2648 -0.9 -1.6 hypothetical protein compare
Psest_3489 -0.9 -4.9 hypothetical protein compare
Psest_3367 -0.9 -1.5 translation initation factor SUI1, putative, prokaryotic compare
Psest_2437 -0.9 -2.4 Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) (from data) compare
Psest_3555 -0.9 -2.4 Predicted methyltransferase compare
Psest_3938 -0.9 -1.8 Uncharacterized protein conserved in bacteria compare
Psest_2096 -0.9 -2.3 Domain of unknown function (DUF1883). compare
Psest_2067 -0.9 -0.7 ABC-type oligopeptide transport system, periplasmic component compare
Psest_3908 -0.9 -1.4 Cytochrome c553 compare
Psest_3458 -0.8 -1.8 hypothetical protein compare
Psest_4161 -0.8 -2.5 Flagellar basal body-associated protein compare
Psest_2798 -0.8 -1.6 Truncated hemoglobins compare
Psest_0830 -0.8 -3.9 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases compare
Psest_2123 -0.8 -1.0 fusion of gluconokinase (EC 2.7.1.12) and the small permease component of the D-gluconate TRAP transporter (from data) compare
Psest_3112 -0.8 -2.1 electron transport complex, RnfABCDGE type, A subunit compare
Psest_0759 -0.8 -1.0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT). compare
Psest_1804 -0.8 -1.2 Superfamily II DNA and RNA helicases compare
Psest_0837 -0.8 -1.3 Putative lipid carrier protein compare
Psest_3307 -0.8 -3.2 ABC-type transport system involved in resistance to organic solvents, ATPase component compare
Psest_2651 -0.8 -1.4 DNA topoisomerase I, bacterial compare
Psest_0953 -0.8 -3.9 iron-sulfur cluster-binding protein compare
Psest_2866 -0.8 -2.4 Uncharacterized conserved protein compare
Psest_4177 -0.8 -1.3 flagellar biosynthetic protein FliP compare
Psest_2423 -0.8 -2.9 Uncharacterized conserved protein compare
Psest_4371 -0.8 -1.4 Multisubunit Na+/H+ antiporter, MnhB subunit compare
Psest_3114 -0.8 -3.0 electron transport complex, RnfABCDGE type, C subunit compare
Psest_3115 -0.8 -2.6 electron transport complex, RnfABCDGE type, D subunit compare
Psest_0514 -0.7 -3.2 lytic murein transglycosylase B compare
Psest_0815 -0.7 -5.1 Cytochrome c, mono- and diheme variants compare
Psest_2413 -0.7 -2.1 Periplasmic protein TonB, links inner and outer membranes compare
Psest_3389 -0.7 -1.3 hypothetical protein compare
Psest_1082 -0.7 -1.5 Enoyl-CoA hydratase/carnithine racemase compare
Psest_3626 -0.7 -2.7 hypothetical protein compare
Psest_3700 -0.7 -1.0 hypothetical protein compare
Psest_2712 -0.7 -2.1 Surface lipoprotein compare
Psest_0063 -0.7 -4.1 tryptophan synthase, beta subunit compare
Psest_4001 -0.7 -2.6 acetylornithine deacetylase (ArgE) compare
Psest_1179 -0.7 -1.0 2-hydroxy-3-oxopropionate reductase compare
Psest_1468 -0.7 -1.9 hypothetical protein compare
Psest_2652 -0.7 -1.9 Protein of unknown function (DUF1653). compare
Psest_0718 -0.7 -1.6 nicotinate-nucleotide pyrophosphorylase compare
Psest_2022 -0.7 -1.6 ADP-ribose pyrophosphatase compare
Psest_2066 -0.7 -1.6 ABC-type uncharacterized transport system, permease component compare
Psest_3296 -0.7 -1.2 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain compare
Psest_1636 -0.7 -1.9 putative transporter, required for glycine utilization (from data) compare
Psest_1349 -0.7 -1.2 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) compare
Psest_2872 -0.7 -0.9 protein RecA compare
Psest_0760 -0.7 -1.7 Polyketide cyclase / dehydrase and lipid transport. compare
Psest_3490 -0.7 -1.7 Signal transduction histidine kinase, nitrate/nitrite-specific compare
Psest_1642 -0.7 -1.8 Uncharacterized protein conserved in bacteria compare
Psest_4216 -0.7 -2.3 hypothetical protein compare
Psest_1090 -0.7 -2.6 ABC-type branched-chain amino acid transport systems, ATPase component compare
Psest_0697 -0.7 -1.4 ribosomal protein L9 compare
Psest_4363 -0.7 -2.9 ATPases involved in chromosome partitioning compare
Psest_3973 -0.7 -1.1 Anti-sigma regulatory factor (Ser/Thr protein kinase) compare
Psest_2545 -0.7 -1.5 recombination protein RecR compare
Psest_0313 -0.7 -2.1 5,10-methylenetetrahydrofolate reductase, prokaryotic form compare
Psest_4010 -0.7 -1.0 peroxiredoxin, OsmC subfamily compare
Psest_0872 -0.7 -0.7 Helix-turn-helix. compare
Psest_3100 -0.7 -3.2 RNA polymerase sigma factor RpoE compare
Psest_1824 -0.6 -1.2 Sugar transferases involved in lipopolysaccharide synthesis compare
Psest_1843 -0.6 -1.3 Uncharacterized Fe-S protein compare
Psest_1377 -0.6 -2.3 hypothetical protein compare
Psest_3322 -0.6 -5.1 TIGR02099 family protein compare
Psest_1876 -0.6 -1.5 Predicted membrane protein compare
Psest_3884 -0.6 -0.8 Signal transduction histidine kinase compare
Psest_2083 -0.6 -2.2 Putative sterol carrier protein compare
Psest_4113 -0.6 -3.9 hypothetical protein compare
Psest_4126 -0.6 -1.2 Predicted peroxiredoxins compare
Psest_0951 -0.6 -3.1 FAD/FMN-containing dehydrogenases compare
Psest_4003 -0.6 -2.2 TIGR00153 family protein compare
Psest_0062 -0.6 -3.8 tryptophan synthase, alpha subunit compare
Psest_0133 -0.6 -0.8 type VI secretion protein, VC_A0107 family compare
Psest_3487 -0.6 -3.8 Nitrate/nitrite transporter compare
Psest_0145 -0.6 -2.2 A/G-specific adenine glycosylase compare
Psest_0660 -0.6 -1.1 Methyl-accepting chemotaxis protein compare
Psest_2544 -0.6 -2.8 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components compare
Psest_2671 -0.6 -1.3 Transcriptional regulator compare
Psest_1417 -0.6 -0.6 hypothetical protein compare
Psest_3413 -0.6 -1.3 hypothetical protein compare
Psest_3762 -0.6 -1.8 iron donor protein CyaY compare
Psest_1308 -0.6 -2.1 ABC-type branched-chain amino acid transport systems, ATPase component compare
Psest_2325 -0.6 -3.0 alpha-L-glutamate ligase-related protein compare
Psest_3303 -0.6 -2.0 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_1149 -0.6 -1.0 Protein affecting phage T7 exclusion by the F plasmid compare
Psest_3575 -0.6 -2.5 Arabinose efflux permease compare
Psest_0164 -0.6 -0.7 Glutaredoxin, GrxC family compare
Psest_3343 -0.6 -1.4 Predicted periplasmic protein compare
Psest_1709 -0.6 -1.4 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
Psest_0279 -0.6 -2.0 methionine biosynthesis protein MetW compare
Psest_2752 -0.6 -1.0 Uncharacterized protein conserved in bacteria compare
Psest_0632 -0.6 -1.5 hypothetical protein compare
Psest_3339 -0.6 -1.8 Signal transduction histidine kinase compare
Psest_0325 -0.6 -4.8 Putative threonine efflux protein compare
Psest_1132 -0.6 -2.2 mutator mutT protein compare
Psest_2983 -0.6 -1.4 hypothetical protein compare
Psest_0260 -0.6 -0.7 Cell division protein compare
Psest_2645 -0.6 -2.5 Transcriptional regulator compare
Psest_2239 -0.6 -1.7 RES domain. compare
Psest_0355 -0.6 -0.6 Glycine cleavage system regulatory protein compare
Psest_1907 -0.6 -0.9 hypothetical protein compare
Psest_2018 -0.6 -0.9 Uncharacterized conserved protein compare
Psest_0212 -0.6 -0.8 exodeoxyribonuclease V, gamma subunit compare


Specific Phenotypes

None in this experiment

For Pseudomonas stutzeri RCH2 in anaerobic experiments

For anaerobic Sodium nitrate across organisms