Experiment set9H45 for Pseudomonas stutzeri RCH2

Compare to:

Nitrate/ lactate media with Nitrate 20mM and .05mM Tungsten

200 most important genes:

  gene name fitness t score description  
Psest_1115 -3.7 -3.6 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 compare
Psest_2234 -3.1 -8.6 oxygen-independent coproporphyrinogen III oxidase compare
Psest_1540 -2.7 -2.6 biotin-dependent carboxylase uncharacterized domain compare
Psest_1473 -2.7 -6.2 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_3301 -2.7 -4.7 Predicted transcriptional regulator, BolA superfamily compare
Psest_2988 -2.6 -8.2 aspartate kinase, monofunctional class compare
Psest_0828 -2.5 -5.8 Nitric oxide reductase activation protein compare
Psest_2491 -2.2 -5.4 succinyl-CoA synthetase, beta subunit compare
Psest_3384 -2.1 -7.5 glutamate 5-kinase compare
Psest_0958 -2.1 -4.4 Oligoketide cyclase/lipid transport protein compare
Psest_2490 -2.0 -8.1 succinyl-CoA synthetase, alpha subunit compare
Psest_2579 -2.0 -2.6 amidophosphoribosyltransferase compare
Psest_0508 -1.9 -7.3 gamma-glutamyl phosphate reductase compare
Psest_1660 -1.9 -1.8 NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit compare
Psest_3484 -1.9 -5.3 nitrate reductase molybdenum cofactor assembly chaperone compare
Psest_2333 -1.9 -1.4 Protein of unknown function (DUF3359). compare
Psest_3168 -1.8 -2.0 Molybdopterin converting factor, large subunit compare
Psest_0827 -1.8 -10.8 Nitric oxide reductase large subunit compare
Psest_0823 -1.8 -3.5 Transcriptional regulators compare
Psest_0826 -1.7 -6.5 Cytochrome c compare
Psest_0799 -1.7 -3.2 Uncharacterized protein involved in response to NO compare
Psest_1655 -1.7 -2.7 NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit compare
Psest_3092 -1.7 -1.9 ribonuclease III, bacterial compare
Psest_2101 -1.7 -1.8 hypothetical protein compare
Psest_4177 -1.6 -1.7 flagellar biosynthetic protein FliP compare
Psest_0575 -1.6 -1.5 HrpA-like helicases compare
Psest_3226 -1.5 -1.4 Predicted membrane protein compare
Psest_0814 -1.5 -2.2 MoxR-like ATPases compare
Psest_3270 -1.5 -2.2 probable S-adenosylmethionine-dependent methyltransferase, YraL family compare
Psest_4219 -1.5 -1.7 DNA polymerase I compare
Psest_2001 -1.5 -1.3 2-phosphoglycolate phosphatase, prokaryotic compare
Psest_1961 -1.4 -7.7 molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial compare
Psest_3843 -1.4 -7.2 4-hydroxybenzoate synthetase (chorismate lyase) compare
Psest_3565 -1.4 -1.3 hypothetical protein compare
Psest_1457 -1.4 -1.9 FOG: Ankyrin repeat compare
Psest_3479 -1.4 -3.8 molybdenum cofactor synthesis domain compare
Psest_3884 -1.4 -1.5 Signal transduction histidine kinase compare
Psest_0498 -1.4 -1.2 ribosome small subunit-dependent GTPase A compare
Psest_1012 -1.4 -1.3 Signal transduction histidine kinase compare
Psest_3170 -1.3 -4.6 molybdenum cofactor biosynthesis protein MoaC compare
Psest_0835 -1.3 -8.6 Collagenase and related proteases compare
Psest_1804 -1.3 -1.7 Superfamily II DNA and RNA helicases compare
Psest_1661 -1.3 -0.9 Membrane-associated lipoprotein involved in thiamine biosynthesis compare
Psest_3480 -1.3 -2.1 molybdenum cofactor biosynthesis protein B, proteobacterial compare
Psest_3483 -1.3 -5.0 respiratory nitrate reductase, gamma subunit compare
Psest_0822 -1.3 -3.0 Transcriptional regulators compare
Psest_3693 -1.3 -1.9 Glycosyltransferases involved in cell wall biogenesis compare
Psest_1295 -1.2 -2.8 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_0144 -1.2 -5.7 Fe-S cluster protector protein compare
Psest_1292 -1.2 -4.4 monothiol glutaredoxin, Grx4 family compare
Psest_1474 -1.2 -1.4 phosphoribosylaminoimidazole synthetase compare
Psest_3810 -1.2 -0.8 orotate phosphoribosyltransferase compare
Psest_0417 -1.2 -1.4 Acyl-CoA dehydrogenases compare
Psest_2718 -1.2 -1.3 hypothetical protein compare
Psest_0207 -1.2 -2.7 hypothetical protein compare
Psest_2437 -1.2 -3.2 Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) (from data) compare
Psest_2088 -1.2 -1.7 Uncharacterized protein conserved in bacteria compare
Psest_4191 -1.2 -2.0 Transcriptional regulator compare
Psest_2561 -1.2 -1.1 hypothetical protein compare
Psest_1888 -1.2 -1.2 Sua5/YciO/YrdC/YwlC family protein compare
Psest_1013 -1.2 -1.3 phosphoribosylamine--glycine ligase compare
Psest_3485 -1.2 -6.7 nitrate reductase, beta subunit compare
Psest_1999 -1.1 -1.2 pseudouridine synthase compare
Psest_2945 -1.1 -1.0 septum site-determining protein MinC compare
Psest_3296 -1.1 -1.6 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain compare
Psest_3486 -1.1 -8.4 respiratory nitrate reductase, alpha subunit compare
Psest_1657 -1.1 -1.0 NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit compare
Psest_3115 -1.1 -3.8 electron transport complex, RnfABCDGE type, D subunit compare
Psest_3647 -1.1 -3.7 Indole-3-glycerol phosphate synthase compare
Psest_3146 -1.1 -1.6 hypothetical protein compare
Psest_1161 -1.1 -2.0 E3 Ubiquitin ligase. compare
Psest_3113 -1.1 -1.5 electron transport complex, RnfABCDGE type, B subunit compare
Psest_3129 -1.1 -1.3 tyrosine recombinase XerD compare
Psest_4371 -1.0 -2.3 Multisubunit Na+/H+ antiporter, MnhB subunit compare
Psest_1920 -1.0 -1.2 Uncharacterized protein conserved in bacteria compare
Psest_0442 -1.0 -1.9 ATPases of the AAA+ class compare
Psest_2796 -1.0 -3.1 HNH endonuclease. compare
Psest_0836 -1.0 -3.9 Collagenase and related proteases compare
Psest_3937 -1.0 -1.3 ATP-dependent protease HslVU, ATPase subunit compare
Psest_2104 -1.0 -1.2 IscR-regulated protein YhgI compare
Psest_0558 -1.0 -0.9 urease, beta subunit compare
Psest_4010 -1.0 -1.4 peroxiredoxin, OsmC subfamily compare
Psest_0952 -1.0 -1.4 Uncharacterized conserved protein compare
Psest_4201 -1.0 -1.2 general secretion pathway protein F compare
Psest_1656 -1.0 -1.3 NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit compare
Psest_0515 -1.0 -1.9 rare lipoprotein A compare
Psest_3881 -0.9 -1.5 hypothetical protein compare
Psest_0817 -0.9 -5.1 Ethylbenzene dehydrogenase. compare
Psest_0292 -0.9 -2.5 Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase compare
Psest_1506 -0.9 -2.8 queuosine biosynthesis protein QueC compare
Psest_3487 -0.9 -5.5 Nitrate/nitrite transporter compare
Psest_2711 -0.9 -1.9 PilZ domain. compare
Psest_0810 -0.9 -3.8 uroporphyrin-III C-methyltransferase compare
Psest_1691 -0.9 -1.9 aminodeoxychorismate lyase compare
Psest_0385 -0.9 -1.4 Conserved secreted protein compare
Psest_0830 -0.9 -4.5 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases compare
Psest_2637 -0.9 -1.3 putative methyltransferase, YaeB/AF_0241 family compare
Psest_1466 -0.9 -2.1 transcriptional regulator, Spx/MgsR family compare
Psest_2525 -0.9 -1.6 cytochrome c oxidase, cbb3-type, subunit II compare
Psest_0811 -0.9 -5.1 heme d1 biosynthesis radical SAM protein NirJ compare
Psest_0114 -0.9 -1.8 RNA polymerase sigma factor, sigma-70 family compare
Psest_3212 -0.8 -2.1 FKBP-type peptidyl-prolyl cis-trans isomerases 2 compare
Psest_1879 -0.8 -1.3 Trk-type K+ transport systems, membrane components compare
Psest_3306 -0.8 -2.5 conserved hypothetical integral membrane protein compare
Psest_1562 -0.8 -1.1 Uncharacterized protein conserved in bacteria compare
Psest_0953 -0.8 -4.1 iron-sulfur cluster-binding protein compare
Psest_0821 -0.8 -4.8 Cytochrome D1 heme domain. compare
Psest_1840 -0.8 -7.3 Undecaprenyl-phosphate glucose phosphotransferase compare
Psest_1843 -0.8 -1.6 Uncharacterized Fe-S protein compare
Psest_0062 -0.8 -4.6 tryptophan synthase, alpha subunit compare
Psest_2872 -0.8 -1.0 protein RecA compare
Psest_4161 -0.8 -2.4 Flagellar basal body-associated protein compare
Psest_2130 -0.8 -2.0 exodeoxyribonuclease III compare
Psest_3322 -0.8 -6.2 TIGR02099 family protein compare
Psest_1762 -0.8 -1.3 cytochrome c-type biogenesis protein CcmI compare
Psest_2565 -0.8 -1.6 Transcriptional regulator compare
Psest_0954 -0.8 -3.2 Fe-S oxidoreductase compare
Psest_4170 -0.8 -1.6 Flagellar biosynthesis/type III secretory pathway protein compare
Psest_3991 -0.8 -1.4 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) compare
Psest_3114 -0.8 -3.2 electron transport complex, RnfABCDGE type, C subunit compare
Psest_1532 -0.8 -1.7 DNA recombination-dependent growth factor C compare
Psest_3490 -0.8 -1.9 Signal transduction histidine kinase, nitrate/nitrite-specific compare
Psest_3304 -0.7 -2.3 ABC-type transport system involved in resistance to organic solvents, auxiliary component compare
Psest_4363 -0.7 -3.2 ATPases involved in chromosome partitioning compare
Psest_2066 -0.7 -1.7 ABC-type uncharacterized transport system, permease component compare
Psest_0296 -0.7 -3.9 glutathione synthetase, prokaryotic compare
Psest_1377 -0.7 -2.6 hypothetical protein compare
Psest_3001 -0.7 -2.5 molybdenum ABC transporter, ATP-binding protein compare
Psest_3339 -0.7 -2.2 Signal transduction histidine kinase compare
Psest_4340 -0.7 -3.0 Protein of unknown function (DUF3617). compare
Psest_4142 -0.7 -0.9 hypothetical protein compare
Psest_3550 -0.7 -1.7 3,4-dihydroxy-2-butanone 4-phosphate synthase compare
Psest_1709 -0.7 -1.8 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
Psest_3489 -0.7 -4.1 hypothetical protein compare
Psest_2850 -0.7 -0.6 Multisubunit Na+/H+ antiporter, MnhC subunit compare
Psest_2976 -0.7 -1.1 hypothetical protein compare
Psest_0064 -0.7 -2.0 Transcriptional regulator compare
Psest_0815 -0.7 -4.8 Cytochrome c, mono- and diheme variants compare
Psest_3998 -0.7 -2.6 glutamate--cysteine ligase compare
Psest_1597 -0.7 -1.7 Protein of unknown function (DUF2933). compare
Psest_4291 -0.7 -2.4 agmatine deiminase compare
Psest_3908 -0.7 -1.3 Cytochrome c553 compare
Psest_3112 -0.7 -1.9 electron transport complex, RnfABCDGE type, A subunit compare
Psest_3188 -0.7 -2.4 hypothetical protein compare
Psest_3084 -0.7 -1.2 methyltransferase, putative compare
Psest_2758 -0.7 -1.2 Predicted transcriptional regulators compare
Psest_3307 -0.7 -2.9 ABC-type transport system involved in resistance to organic solvents, ATPase component compare
Psest_2370 -0.7 -1.4 Protein of unknown function (DUF1652). compare
Psest_2712 -0.7 -2.0 Surface lipoprotein compare
Psest_1082 -0.7 -1.4 Enoyl-CoA hydratase/carnithine racemase compare
Psest_3047 -0.7 -0.7 methionyl-tRNA synthetase/methionyl-tRNA synthetase C-terminal region/beta chain compare
Psest_0083 -0.7 -1.4 Uncharacterized conserved protein compare
Psest_1659 -0.7 -0.9 NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit compare
Psest_3700 -0.7 -1.0 hypothetical protein compare
Psest_1794 -0.7 -2.2 Flagellar motor protein compare
Psest_1120 -0.6 -2.4 uracil phosphoribosyltransferase compare
Psest_0998 -0.6 -1.1 poly(A) polymerase compare
Psest_3230 -0.6 -2.2 Uncharacterized conserved protein compare
Psest_1215 -0.6 -1.1 Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) compare
Psest_1510 -0.6 -1.4 Putative Zn-dependent protease, contains TPR repeats compare
Psest_1511 -0.6 -2.3 Predicted redox protein, regulator of disulfide bond formation compare
Psest_0063 -0.6 -3.5 tryptophan synthase, beta subunit compare
Psest_3100 -0.6 -3.0 RNA polymerase sigma factor RpoE compare
Psest_1601 -0.6 -0.7 Signal transduction histidine kinase compare
Psest_3927 -0.6 -2.1 thiazole biosynthesis/tRNA modification protein ThiI compare
Psest_0820 -0.6 -2.2 hypothetical protein compare
Psest_4098 -0.6 -1.5 Superfamily I DNA and RNA helicases compare
Psest_0795 -0.6 -1.4 ABC-type multidrug transport system, ATPase component compare
Psest_0891 -0.6 -2.6 Uncharacterized protein conserved in bacteria compare
Psest_3177 -0.6 -1.0 hypothetical protein compare
Psest_1901 -0.6 -1.9 hypothetical protein compare
Psest_1646 -0.6 -2.5 Predicted ICC-like phosphoesterases compare
Psest_3955 -0.6 -2.2 Uncharacterized protein conserved in bacteria compare
Psest_2544 -0.6 -2.4 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components compare
Psest_2136 -0.6 -3.7 Predicted homoserine dehydrogenase compare
Psest_1599 -0.6 -2.2 heavy metal sensor kinase compare
Psest_1444 -0.6 -2.4 Curli production assembly/transport component CsgF. compare
Psest_0060 -0.6 -1.3 Predicted Fe-S protein compare
Psest_3015 -0.6 -2.7 hypothetical protein compare
Psest_4298 -0.6 -0.7 Response regulator containing a CheY-like receiver domain and a GGDEF domain compare
Psest_3305 -0.6 -2.6 ABC-type transport system involved in resistance to organic solvents, periplasmic component compare
Psest_3575 -0.6 -2.6 Arabinose efflux permease compare
Psest_3527 -0.6 -1.6 Pseudouridylate synthases, 23S RNA-specific compare
Psest_1087 -0.6 -0.8 uncharacterized peroxidase-related enzyme compare
Psest_1663 -0.6 -1.3 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes compare
Psest_0310 -0.6 -1.2 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family compare
Psest_1458 -0.6 -1.5 Uncharacterized protein conserved in bacteria compare
Psest_2037 -0.6 -2.3 uroporphyrin-III C-methyltransferase compare
Psest_3813 -0.6 -3.4 ribonuclease PH compare
Psest_1103 -0.6 -1.3 GTP-binding protein YchF compare
Psest_1357 -0.6 -1.6 Uncharacterized protein conserved in bacteria compare
Psest_0161 -0.6 -1.2 Membrane-bound metallopeptidase compare
Psest_1073 -0.6 -2.3 TRAP-type mannitol/chloroaromatic compound transport system, small permease component compare
Psest_3060 -0.6 -1.2 hypothetical protein compare
Psest_2594 -0.6 -1.4 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_3556 -0.6 -2.1 2'-5' RNA ligase compare
Psest_1282 -0.6 -1.2 Amidases related to nicotinamidase compare
Psest_0325 -0.6 -4.5 Putative threonine efflux protein compare
Psest_1989 -0.6 -2.3 Transcriptional regulators compare
Psest_4335 -0.6 -1.3 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems compare


Specific Phenotypes

None in this experiment

For Pseudomonas stutzeri RCH2 in anaerobic experiments

For anaerobic Sodium nitrate across organisms