Experiment set9H44 for Pseudomonas stutzeri RCH2

Compare to:

Nitrite/ lactate media with Nitrite 20mM

200 most important genes:

  gene name fitness t score description  
Psest_0828 -3.8 -4.5 Nitric oxide reductase activation protein compare
Psest_0820 -3.4 -5.0 hypothetical protein compare
Psest_3031 -3.3 -1.8 hypothetical protein compare
Psest_2718 -3.3 -2.2 hypothetical protein compare
Psest_0826 -3.3 -6.6 Cytochrome c compare
Psest_0827 -3.2 -11.5 Nitric oxide reductase large subunit compare
Psest_0823 -3.1 -3.7 Transcriptional regulators compare
Psest_2234 -3.0 -7.0 oxygen-independent coproporphyrinogen III oxidase compare
Psest_0144 -2.8 -7.2 Fe-S cluster protector protein compare
Psest_0830 -2.8 -7.6 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases compare
Psest_3129 -2.8 -1.9 tyrosine recombinase XerD compare
Psest_2490 -2.8 -7.7 succinyl-CoA synthetase, alpha subunit compare
Psest_0814 -2.7 -2.5 MoxR-like ATPases compare
Psest_0815 -2.5 -11.0 Cytochrome c, mono- and diheme variants compare
Psest_1204 -2.5 -2.3 Transcriptional regulators compare
Psest_0822 -2.4 -3.6 Transcriptional regulators compare
Psest_0821 -2.4 -9.6 Cytochrome D1 heme domain. compare
Psest_1473 -2.4 -5.5 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_0811 -2.3 -9.2 heme d1 biosynthesis radical SAM protein NirJ compare
Psest_2491 -2.3 -4.6 succinyl-CoA synthetase, beta subunit compare
Psest_0959 -2.3 -1.6 Uncharacterized protein conserved in bacteria compare
Psest_3307 -2.3 -5.8 ABC-type transport system involved in resistance to organic solvents, ATPase component compare
Psest_0817 -2.3 -7.8 Ethylbenzene dehydrogenase. compare
Psest_1656 -2.3 -1.5 NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit compare
Psest_3301 -2.2 -4.2 Predicted transcriptional regulator, BolA superfamily compare
Psest_4191 -2.1 -2.0 Transcriptional regulator compare
Psest_2988 -2.1 -6.7 aspartate kinase, monofunctional class compare
Psest_1888 -2.0 -1.5 Sua5/YciO/YrdC/YwlC family protein compare
Psest_4098 -1.9 -1.9 Superfamily I DNA and RNA helicases compare
Psest_0810 -1.9 -6.0 uroporphyrin-III C-methyltransferase compare
Psest_3384 -1.9 -6.6 glutamate 5-kinase compare
Psest_2293 -1.9 -1.8 hypothetical protein compare
Psest_1907 -1.9 -2.0 hypothetical protein compare
Psest_0796 -1.8 -3.2 ABC-type transport system involved in multi-copper enzyme maturation, permease component compare
Psest_0799 -1.8 -2.8 Uncharacterized protein involved in response to NO compare
Psest_0958 -1.8 -4.1 Oligoketide cyclase/lipid transport protein compare
Psest_1496 -1.8 -1.2 Holliday junction DNA helicase, RuvA subunit compare
Psest_0515 -1.8 -1.2 rare lipoprotein A compare
Psest_1600 -1.8 -2.6 hypothetical protein compare
Psest_2018 -1.7 -1.6 Uncharacterized conserved protein compare
Psest_0797 -1.7 -7.2 Predicted lipoprotein involved in nitrous oxide reduction compare
Psest_1617 -1.7 -2.3 Methylase involved in ubiquinone/menaquinone biosynthesis compare
Psest_3092 -1.7 -2.0 ribonuclease III, bacterial compare
Psest_1655 -1.7 -2.0 NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit compare
Psest_0277 -1.7 -1.6 non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family compare
Psest_1295 -1.7 -2.8 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_3236 -1.7 -2.5 hypothetical protein compare
Psest_2712 -1.7 -3.4 Surface lipoprotein compare
Psest_3998 -1.6 -4.4 glutamate--cysteine ligase compare
Psest_0952 -1.6 -1.9 Uncharacterized conserved protein compare
Psest_4314 -1.6 -4.0 ABC-type metal ion transport system, ATPase component compare
Psest_3117 -1.6 -2.4 electron transport complex, RnfABCDGE type, E subunit compare
Psest_3115 -1.6 -4.2 electron transport complex, RnfABCDGE type, D subunit compare
Psest_0794 -1.6 -10.6 parallel beta-helix repeat (two copies) compare
Psest_2561 -1.6 -1.2 hypothetical protein compare
Psest_3305 -1.6 -4.9 ABC-type transport system involved in resistance to organic solvents, periplasmic component compare
Psest_2333 -1.6 -1.2 Protein of unknown function (DUF3359). compare
Psest_1231 -1.6 -5.3 Na+/H+ antiporter NhaD and related arsenite permeases compare
Psest_0708 -1.5 -1.4 outer membrane assembly lipoprotein YfiO compare
Psest_2579 -1.5 -3.0 amidophosphoribosyltransferase compare
Psest_2104 -1.5 -1.0 IscR-regulated protein YhgI compare
Psest_0813 -1.5 -3.7 Heme/copper-type cytochrome/quinol oxidase, subunit 3 compare
Psest_1022 -1.5 -5.3 Thiol:disulfide interchange protein compare
Psest_0793 -1.5 -9.7 Nitrous oxide reductase compare
Psest_0508 -1.4 -5.9 gamma-glutamyl phosphate reductase compare
Psest_2976 -1.4 -1.4 hypothetical protein compare
Psest_2911 -1.4 -2.1 Protein of unknown function (DUF2945). compare
Psest_2325 -1.4 -5.4 alpha-L-glutamate ligase-related protein compare
Psest_3304 -1.4 -3.2 ABC-type transport system involved in resistance to organic solvents, auxiliary component compare
Psest_1804 -1.4 -1.3 Superfamily II DNA and RNA helicases compare
Psest_0969 -1.4 -1.8 transcription elongation factor GreA compare
Psest_2585 -1.4 -1.3 pseudouridylate synthase I compare
Psest_3762 -1.4 -2.7 iron donor protein CyaY compare
Psest_2711 -1.4 -1.6 PilZ domain. compare
Psest_2329 -1.4 -7.5 Transcriptional regulator compare
Psest_0795 -1.3 -3.0 ABC-type multidrug transport system, ATPase component compare
Psest_3084 -1.3 -2.1 methyltransferase, putative compare
Psest_0296 -1.3 -5.5 glutathione synthetase, prokaryotic compare
Psest_1463 -1.3 -1.2 SufE protein probably involved in Fe-S center assembly compare
Psest_3937 -1.3 -1.7 ATP-dependent protease HslVU, ATPase subunit compare
Psest_3843 -1.3 -6.1 4-hydroxybenzoate synthetase (chorismate lyase) compare
Psest_4315 -1.3 -2.0 ABC-type metal ion transport system, permease component compare
Psest_2308 -1.3 -1.2 Predicted Fe-S protein compare
Psest_3306 -1.3 -3.0 conserved hypothetical integral membrane protein compare
Psest_1504 -1.3 -2.9 tol-pal system protein YbgF compare
Psest_1012 -1.3 -1.2 Signal transduction histidine kinase compare
Psest_0792 -1.2 -9.0 Regulator of nitric oxide reductase transcription compare
Psest_0346 -1.2 -2.1 small component of pyruvate/D-alanine transporter (TIGR03647) (from data) compare
Psest_1292 -1.2 -4.1 monothiol glutaredoxin, Grx4 family compare
Psest_1474 -1.2 -0.8 phosphoribosylaminoimidazole synthetase compare
Psest_0697 -1.2 -2.0 ribosomal protein L9 compare
Psest_0987 -1.2 -2.0 Predicted periplasmic or secreted lipoprotein compare
Psest_3339 -1.2 -2.9 Signal transduction histidine kinase compare
Psest_3112 -1.2 -2.4 electron transport complex, RnfABCDGE type, A subunit compare
Psest_2864 -1.2 -2.3 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_0097 -1.2 -1.7 phosphonates metabolism transcriptional regulator PhnF compare
Psest_0609 -1.2 -1.5 hypothetical protein compare
Psest_2312 -1.2 -4.6 Small-conductance mechanosensitive channel compare
Psest_0836 -1.2 -3.7 Collagenase and related proteases compare
Psest_0227 -1.2 -2.5 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific compare
Psest_1661 -1.2 -0.8 Membrane-associated lipoprotein involved in thiamine biosynthesis compare
Psest_2899 -1.2 -1.5 hypothetical protein compare
Psest_0165 -1.1 -2.2 protein-export chaperone SecB compare
Psest_1516 -1.1 -1.5 Uncharacterized lipoprotein compare
Psest_2288 -1.1 -2.4 trigger factor compare
Psest_2088 -1.1 -1.5 Uncharacterized protein conserved in bacteria compare
Psest_2025 -1.1 -1.2 cold shock domain protein CspD compare
Psest_2748 -1.1 -1.7 Transcriptional regulator compare
Psest_2726 -1.1 -1.4 Rhodanese-related sulfurtransferase compare
Psest_4088 -1.1 -2.0 Transcriptional regulators compare
Psest_1659 -1.1 -1.0 NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit compare
Psest_3842 -1.1 -2.8 Transcriptional regulators compare
Psest_3878 -1.1 -2.2 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_1506 -1.1 -2.8 queuosine biosynthesis protein QueC compare
Psest_3338 -1.1 -0.7 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain compare
Psest_3838 -1.1 -2.4 Uncharacterized protein, possibly involved in utilization of glycolate and propanediol compare
Psest_3810 -1.1 -0.7 orotate phosphoribosyltransferase compare
Psest_3303 -1.1 -2.7 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_0744 -1.0 -0.9 Uncharacterized conserved protein compare
Psest_3114 -1.0 -3.9 electron transport complex, RnfABCDGE type, C subunit compare
Psest_0954 -1.0 -3.7 Fe-S oxidoreductase compare
Psest_0310 -1.0 -1.9 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family compare
Psest_2531 -1.0 -5.7 cytochrome c oxidase accessory protein FixG compare
Psest_3146 -1.0 -1.0 hypothetical protein compare
Psest_2591 -1.0 -1.6 3-isopropylmalate dehydratase, large subunit compare
Psest_2324 -1.0 -6.2 hypothetical protein compare
Psest_2122 -1.0 -0.9 Parvulin-like peptidyl-prolyl isomerase compare
Psest_0292 -1.0 -2.3 Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase compare
Psest_0511 -1.0 -1.3 rRNA large subunit m3Psi methyltransferase RlmH compare
Psest_3395 -1.0 -1.3 hypothetical protein compare
Psest_1505 -1.0 -1.4 Organic radical activating enzymes compare
Psest_0061 -0.9 -1.9 hypothetical protein compare
Psest_1679 -0.9 -1.0 ribonuclease, Rne/Rng family compare
Psest_0461 -0.9 -4.1 Glycosyltransferase involved in LPS biosynthesis compare
Psest_0950 -0.9 -1.7 hypothetical protein compare
Psest_2360 -0.9 -2.5 Uncharacterized protein, putative amidase compare
Psest_0835 -0.9 -6.1 Collagenase and related proteases compare
Psest_4335 -0.9 -1.7 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems compare
Psest_1657 -0.9 -0.8 NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit compare
Psest_3047 -0.9 -1.0 methionyl-tRNA synthetase/methionyl-tRNA synthetase C-terminal region/beta chain compare
Psest_1215 -0.9 -1.4 Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) compare
Psest_3850 -0.9 -0.8 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_2872 -0.9 -1.0 protein RecA compare
Psest_0696 -0.9 -2.8 hypothetical protein compare
Psest_4316 -0.9 -2.4 ABC-type metal ion transport system, periplasmic component/surface antigen compare
Psest_2067 -0.9 -0.7 ABC-type oligopeptide transport system, periplasmic component compare
Psest_2651 -0.9 -1.4 DNA topoisomerase I, bacterial compare
Psest_2110 -0.9 -1.5 hypothetical protein compare
Psest_2525 -0.9 -1.6 cytochrome c oxidase, cbb3-type, subunit II compare
Psest_1161 -0.8 -0.9 E3 Ubiquitin ligase. compare
Psest_1013 -0.8 -1.2 phosphoribosylamine--glycine ligase compare
Psest_1139 -0.8 -2.3 PAS domain S-box compare
Psest_0595 -0.8 -3.0 Uncharacterized conserved protein compare
Psest_2645 -0.8 -3.3 Transcriptional regulator compare
Psest_2557 -0.8 -1.5 Protein of unknown function (DUF2474). compare
Psest_3973 -0.8 -1.3 Anti-sigma regulatory factor (Ser/Thr protein kinase) compare
Psest_3367 -0.8 -1.3 translation initation factor SUI1, putative, prokaryotic compare
Psest_0833 -0.8 -2.3 Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains compare
Psest_0722 -0.8 -2.6 Predicted ATPase compare
Psest_4103 -0.8 -1.0 AraC-type DNA-binding domain-containing proteins compare
Psest_3296 -0.8 -1.3 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain compare
Psest_3042 -0.8 -0.9 Nitrate reductase cytochrome c-type subunit compare
Psest_1919 -0.8 -1.5 Uncharacterized membrane protein (homolog of Drosophila rhomboid) compare
Psest_3938 -0.8 -1.5 Uncharacterized protein conserved in bacteria compare
Psest_3459 -0.8 -2.3 hypothetical protein compare
Psest_4172 -0.8 -2.6 flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF) compare
Psest_3784 -0.8 -1.2 glyceraldehyde-3-phosphate dehydrogenase, type I compare
Psest_3827 -0.8 -2.3 Transcriptional regulator compare
Psest_1479 -0.8 -1.9 NAD(P)H:quinone oxidoreductase, type IV compare
Psest_1872 -0.7 -1.6 selT/selW/selH selenoprotein domain compare
Psest_3659 -0.7 -1.2 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_4010 -0.7 -0.7 peroxiredoxin, OsmC subfamily compare
Psest_0449 -0.7 -4.7 Glutamine synthetase adenylyltransferase compare
Psest_3767 -0.7 -1.8 tyrosine recombinase XerC compare
Psest_3991 -0.7 -1.5 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) compare
Psest_1999 -0.7 -0.8 pseudouridine synthase compare
Psest_2407 -0.7 -1.5 nitrite reductase [NAD(P)H], small subunit compare
Psest_2304 -0.7 -0.7 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family compare
Psest_3183 -0.7 -2.5 hypothetical protein compare
Psest_1419 -0.7 -2.3 Transcriptional regulator compare
Psest_3159 -0.7 -1.7 phosphoribosylformylglycinamidine synthase, single chain form compare
Psest_2923 -0.7 -1.1 hypothetical protein compare
Psest_3565 -0.7 -0.8 hypothetical protein compare
Psest_3188 -0.7 -2.3 hypothetical protein compare
Psest_3664 -0.7 -0.5 Predicted phosphotransferase related to Ser/Thr protein kinases compare
Psest_0660 -0.7 -1.7 Methyl-accepting chemotaxis protein compare
Psest_0487 -0.7 -1.8 Uncharacterized protein conserved in bacteria compare
Psest_2764 -0.7 -0.8 hypothetical protein compare
Psest_1457 -0.7 -0.8 FOG: Ankyrin repeat compare
Psest_4170 -0.7 -0.9 Flagellar biosynthesis/type III secretory pathway protein compare
Psest_2048 -0.7 -1.0 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_0442 -0.7 -1.4 ATPases of the AAA+ class compare
Psest_3049 -0.7 -2.6 pseudouridine synthase compare
Psest_3069 -0.7 -1.3 3-oxoadipate enol-lactonase compare
Psest_1663 -0.7 -1.3 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes compare
Psest_0601 -0.7 -1.0 hypothetical protein compare
Psest_3222 -0.7 -1.0 Putative threonine efflux protein compare
Psest_0510 -0.7 -1.7 iojap-like ribosome-associated protein compare
Psest_3471 -0.7 -2.2 Thermostable hemolysin. compare
Psest_2766 -0.7 -0.7 hypothetical protein compare


Specific Phenotypes

For 7 genes in this experiment

For anaerobic Sodium nitrite in Pseudomonas stutzeri RCH2

For anaerobic Sodium nitrite across organisms