Experiment set9H43 for Pseudomonas stutzeri RCH2

Compare to:

Nitrite/ lactate media with Nitrite 20mM

200 most important genes:

  gene name fitness t score description  
Psest_0826 -3.7 -7.0 Cytochrome c compare
Psest_0827 -3.2 -12.8 Nitric oxide reductase large subunit compare
Psest_0828 -3.2 -5.7 Nitric oxide reductase activation protein compare
Psest_2491 -3.2 -5.2 succinyl-CoA synthetase, beta subunit compare
Psest_2490 -3.2 -8.1 succinyl-CoA synthetase, alpha subunit compare
Psest_2234 -3.1 -7.4 oxygen-independent coproporphyrinogen III oxidase compare
Psest_0830 -3.0 -8.3 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases compare
Psest_3092 -2.9 -2.0 ribonuclease III, bacterial compare
Psest_0821 -2.6 -10.5 Cytochrome D1 heme domain. compare
Psest_3113 -2.5 -2.4 electron transport complex, RnfABCDGE type, B subunit compare
Psest_0811 -2.5 -10.4 heme d1 biosynthesis radical SAM protein NirJ compare
Psest_1656 -2.4 -1.6 NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit compare
Psest_0820 -2.4 -5.2 hypothetical protein compare
Psest_0144 -2.4 -7.9 Fe-S cluster protector protein compare
Psest_0815 -2.3 -11.6 Cytochrome c, mono- and diheme variants compare
Psest_1463 -2.3 -1.7 SufE protein probably involved in Fe-S center assembly compare
Psest_0817 -2.3 -8.0 Ethylbenzene dehydrogenase. compare
Psest_2714 -2.3 -1.6 7-cyano-7-deazaguanine reductase compare
Psest_4191 -2.3 -2.2 Transcriptional regulator compare
Psest_3307 -2.3 -6.3 ABC-type transport system involved in resistance to organic solvents, ATPase component compare
Psest_1388 -2.1 -2.4 Uncharacterized protein conserved in bacteria compare
Psest_0810 -2.1 -7.1 uroporphyrin-III C-methyltransferase compare
Psest_0799 -2.1 -2.6 Uncharacterized protein involved in response to NO compare
Psest_0823 -2.1 -3.8 Transcriptional regulators compare
Psest_3384 -2.0 -7.2 glutamate 5-kinase compare
Psest_1505 -2.0 -2.2 Organic radical activating enzymes compare
Psest_1496 -2.0 -1.3 Holliday junction DNA helicase, RuvA subunit compare
Psest_0795 -2.0 -3.8 ABC-type multidrug transport system, ATPase component compare
Psest_1473 -2.0 -5.5 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_2945 -1.9 -1.3 septum site-determining protein MinC compare
Psest_3236 -1.9 -2.9 hypothetical protein compare
Psest_0814 -1.9 -2.2 MoxR-like ATPases compare
Psest_2988 -1.9 -7.3 aspartate kinase, monofunctional class compare
Psest_0958 -1.9 -4.6 Oligoketide cyclase/lipid transport protein compare
Psest_3305 -1.9 -5.7 ABC-type transport system involved in resistance to organic solvents, periplasmic component compare
Psest_1655 -1.9 -2.2 NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit compare
Psest_3303 -1.9 -4.5 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_0797 -1.8 -7.9 Predicted lipoprotein involved in nitrous oxide reduction compare
Psest_0515 -1.8 -1.7 rare lipoprotein A compare
Psest_3115 -1.8 -4.7 electron transport complex, RnfABCDGE type, D subunit compare
Psest_1204 -1.8 -2.3 Transcriptional regulators compare
Psest_0796 -1.8 -3.4 ABC-type transport system involved in multi-copper enzyme maturation, permease component compare
Psest_0259 -1.8 -1.6 cell division ATP-binding protein FtsE compare
Psest_0813 -1.7 -4.5 Heme/copper-type cytochrome/quinol oxidase, subunit 3 compare
Psest_3301 -1.7 -4.0 Predicted transcriptional regulator, BolA superfamily compare
Psest_0508 -1.7 -7.1 gamma-glutamyl phosphate reductase compare
Psest_1366 -1.7 -1.9 hypothetical protein compare
Psest_1804 -1.7 -1.9 Superfamily II DNA and RNA helicases compare
Psest_1295 -1.7 -2.8 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_4316 -1.7 -4.1 ABC-type metal ion transport system, periplasmic component/surface antigen compare
Psest_0822 -1.7 -3.3 Transcriptional regulators compare
Psest_3304 -1.6 -3.9 ABC-type transport system involved in resistance to organic solvents, auxiliary component compare
Psest_2104 -1.6 -1.1 IscR-regulated protein YhgI compare
Psest_4078 -1.6 -1.8 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D compare
Psest_2325 -1.6 -5.7 alpha-L-glutamate ligase-related protein compare
Psest_2579 -1.6 -3.2 amidophosphoribosyltransferase compare
Psest_2458 -1.5 -2.2 MoxR-like ATPases compare
Psest_0952 -1.5 -1.9 Uncharacterized conserved protein compare
Psest_3226 -1.5 -1.3 Predicted membrane protein compare
Psest_2101 -1.5 -1.6 hypothetical protein compare
Psest_3114 -1.5 -5.4 electron transport complex, RnfABCDGE type, C subunit compare
Psest_0794 -1.5 -10.3 parallel beta-helix repeat (two copies) compare
Psest_3998 -1.5 -4.2 glutamate--cysteine ligase compare
Psest_2855 -1.4 -1.4 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
Psest_1022 -1.4 -5.8 Thiol:disulfide interchange protein compare
Psest_0793 -1.4 -10.2 Nitrous oxide reductase compare
Psest_2324 -1.4 -8.6 hypothetical protein compare
Psest_1306 -1.4 -1.8 hypothetical protein compare
Psest_2566 -1.4 -1.6 Uncharacterized protein conserved in bacteria compare
Psest_2329 -1.4 -7.9 Transcriptional regulator compare
Psest_3306 -1.4 -3.6 conserved hypothetical integral membrane protein compare
Psest_0792 -1.3 -10.0 Regulator of nitric oxide reductase transcription compare
Psest_4103 -1.3 -1.9 AraC-type DNA-binding domain-containing proteins compare
Psest_1231 -1.3 -5.1 Na+/H+ antiporter NhaD and related arsenite permeases compare
Psest_2651 -1.3 -2.2 DNA topoisomerase I, bacterial compare
Psest_1012 -1.3 -1.5 Signal transduction histidine kinase compare
Psest_2712 -1.3 -2.9 Surface lipoprotein compare
Psest_3117 -1.2 -2.4 electron transport complex, RnfABCDGE type, E subunit compare
Psest_0031 -1.2 -2.0 Uncharacterized conserved protein compare
Psest_2531 -1.2 -6.8 cytochrome c oxidase accessory protein FixG compare
Psest_3455 -1.2 -2.4 Dihaem cytochrome c. compare
Psest_0869 -1.2 -2.4 Acetyltransferase (isoleucine patch superfamily) compare
Psest_0836 -1.2 -4.3 Collagenase and related proteases compare
Psest_1474 -1.2 -1.6 phosphoribosylaminoimidazole synthetase compare
Psest_4315 -1.1 -2.3 ABC-type metal ion transport system, permease component compare
Psest_3843 -1.1 -5.3 4-hydroxybenzoate synthetase (chorismate lyase) compare
Psest_1622 -1.1 -2.4 hypothetical protein compare
Psest_1661 -1.1 -1.0 Membrane-associated lipoprotein involved in thiamine biosynthesis compare
Psest_1659 -1.1 -1.2 NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit compare
Psest_4314 -1.1 -3.3 ABC-type metal ion transport system, ATPase component compare
Psest_4219 -1.1 -1.5 DNA polymerase I compare
Psest_4082 -1.1 -2.7 hypothetical protein compare
Psest_0066 -1.1 -1.5 Protein of unknown function (DUF3060). compare
Psest_0725 -1.1 -1.5 Negative regulator of beta-lactamase expression compare
Psest_1504 -1.1 -2.4 tol-pal system protein YbgF compare
Psest_2333 -1.1 -0.9 Protein of unknown function (DUF3359). compare
Psest_2946 -1.1 -1.7 septum site-determining protein MinD compare
Psest_1657 -1.1 -0.9 NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit compare
Psest_1013 -1.1 -1.5 phosphoribosylamine--glycine ligase compare
Psest_2293 -1.0 -1.3 hypothetical protein compare
Psest_2037 -1.0 -3.4 uroporphyrin-III C-methyltransferase compare
Psest_3762 -1.0 -2.9 iron donor protein CyaY compare
Psest_1486 -1.0 -2.0 hypothetical protein compare
Psest_0296 -1.0 -4.8 glutathione synthetase, prokaryotic compare
Psest_2585 -1.0 -1.1 pseudouridylate synthase I compare
Psest_2526 -1.0 -3.7 cytochrome c oxidase, cbb3-type, subunit III compare
Psest_3810 -1.0 -0.9 orotate phosphoribosyltransferase compare
Psest_1506 -1.0 -2.9 queuosine biosynthesis protein QueC compare
Psest_0953 -1.0 -4.9 iron-sulfur cluster-binding protein compare
Psest_3112 -1.0 -2.4 electron transport complex, RnfABCDGE type, A subunit compare
Psest_2001 -1.0 -1.0 2-phosphoglycolate phosphatase, prokaryotic compare
Psest_3565 -0.9 -1.0 hypothetical protein compare
Psest_3296 -0.9 -1.6 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain compare
Psest_3159 -0.9 -2.0 phosphoribosylformylglycinamidine synthase, single chain form compare
Psest_0833 -0.9 -2.7 Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains compare
Psest_3145 -0.9 -1.3 hypothetical protein compare
Psest_4088 -0.9 -2.2 Transcriptional regulators compare
Psest_2092 -0.9 -2.1 hypothetical protein compare
Psest_4177 -0.9 -1.5 flagellar biosynthetic protein FliP compare
Psest_1877 -0.9 -2.0 AraC-type DNA-binding domain-containing proteins compare
Psest_2239 -0.9 -2.9 RES domain. compare
Psest_3860 -0.9 -1.6 Predicted permeases compare
Psest_0164 -0.9 -1.0 Glutaredoxin, GrxC family compare
Psest_2088 -0.9 -1.4 Uncharacterized protein conserved in bacteria compare
Psest_0954 -0.9 -3.6 Fe-S oxidoreductase compare
Psest_4170 -0.9 -1.0 Flagellar biosynthesis/type III secretory pathway protein compare
Psest_3477 -0.9 -2.3 Signal transduction histidine kinase compare
Psest_1162 -0.9 -1.8 Spermidine synthase compare
Psest_3339 -0.9 -2.5 Signal transduction histidine kinase compare
Psest_4145 -0.9 -2.5 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) compare
Psest_2136 -0.9 -4.5 Predicted homoserine dehydrogenase compare
Psest_1540 -0.9 -1.2 biotin-dependent carboxylase uncharacterized domain compare
Psest_2899 -0.9 -1.0 hypothetical protein compare
Psest_1292 -0.9 -3.4 monothiol glutaredoxin, Grx4 family compare
Psest_2872 -0.9 -1.0 protein RecA compare
Psest_1037 -0.9 -1.6 acetolactate synthase, small subunit compare
Psest_0161 -0.9 -1.5 Membrane-bound metallopeptidase compare
Psest_2652 -0.8 -2.5 Protein of unknown function (DUF1653). compare
Psest_1313 -0.8 -1.3 Uncharacterized conserved small protein compare
Psest_0313 -0.8 -2.6 5,10-methylenetetrahydrofolate reductase, prokaryotic form compare
Psest_0835 -0.8 -6.0 Collagenase and related proteases compare
Psest_1772 -0.8 -2.0 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_3482 -0.8 -2.6 Parvulin-like peptidyl-prolyl isomerase compare
Psest_3973 -0.8 -1.3 Anti-sigma regulatory factor (Ser/Thr protein kinase) compare
Psest_2545 -0.8 -1.7 recombination protein RecR compare
Psest_2090 -0.8 -1.0 Protein of unknown function (DUF2970). compare
Psest_3938 -0.8 -1.6 Uncharacterized protein conserved in bacteria compare
Psest_1421 -0.8 -1.7 Glutathione S-transferase compare
Psest_0922 -0.8 -1.8 alkylhydroperoxidase AhpD family core domain compare
Psest_0697 -0.8 -1.5 ribosomal protein L9 compare
Psest_4298 -0.8 -0.8 Response regulator containing a CheY-like receiver domain and a GGDEF domain compare
Psest_1599 -0.8 -1.8 heavy metal sensor kinase compare
Psest_1111 -0.8 -1.6 Flp pilus assembly protein TadD, contains TPR repeats compare
Psest_1990 -0.7 -1.6 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs compare
Psest_2901 -0.7 -1.2 hypothetical protein compare
Psest_0609 -0.7 -0.7 hypothetical protein compare
Psest_0207 -0.7 -1.4 hypothetical protein compare
Psest_1509 -0.7 -3.2 quinolinate synthetase complex, A subunit compare
Psest_3170 -0.7 -2.9 molybdenum cofactor biosynthesis protein MoaC compare
Psest_2768 -0.7 -1.5 Kef-type K+ transport systems, predicted NAD-binding component compare
Psest_1179 -0.7 -1.3 2-hydroxy-3-oxopropionate reductase compare
Psest_1058 -0.7 -1.6 ribosomal-protein-alanine acetyltransferase compare
Psest_2018 -0.7 -1.2 Uncharacterized conserved protein compare
Psest_2976 -0.7 -1.1 hypothetical protein compare
Psest_0376 -0.7 -2.3 glucarate dehydratase compare
Psest_0389 -0.7 -1.7 hypothetical protein compare
Psest_4158 -0.7 -1.7 Flagellar motor protein compare
Psest_0449 -0.7 -4.6 Glutamine synthetase adenylyltransferase compare
Psest_1843 -0.7 -1.4 Uncharacterized Fe-S protein compare
Psest_0514 -0.7 -2.9 lytic murein transglycosylase B compare
Psest_3322 -0.7 -5.7 TIGR02099 family protein compare
Psest_3045 -0.7 -1.3 Cold shock proteins compare
Psest_3151 -0.7 -1.4 hypothetical protein compare
Psest_2716 -0.7 -1.6 ABC-type multidrug transport system, ATPase component compare
Psest_0487 -0.7 -1.9 Uncharacterized protein conserved in bacteria compare
Psest_3690 -0.7 -2.2 Acyl carrier protein compare
Psest_0060 -0.7 -0.8 Predicted Fe-S protein compare
Psest_1120 -0.7 -2.3 uracil phosphoribosyltransferase compare
Psest_0461 -0.7 -3.0 Glycosyltransferase involved in LPS biosynthesis compare
Psest_3937 -0.7 -1.3 ATP-dependent protease HslVU, ATPase subunit compare
Psest_3913 -0.7 -1.7 hypothetical protein compare
Psest_3827 -0.7 -2.1 Transcriptional regulator compare
Psest_4216 -0.6 -1.6 hypothetical protein compare
Psest_1514 -0.6 -2.0 Glycine cleavage system regulatory protein compare
Psest_1510 -0.6 -1.6 Putative Zn-dependent protease, contains TPR repeats compare
Psest_3213 -0.6 -2.2 acetate kinase compare
Psest_3550 -0.6 -1.0 3,4-dihydroxy-2-butanone 4-phosphate synthase compare
Psest_4113 -0.6 -3.7 hypothetical protein compare
Psest_1322 -0.6 -1.2 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases compare
Psest_3458 -0.6 -1.6 hypothetical protein compare
Psest_2880 -0.6 -2.6 Glycosyltransferase compare
Psest_1227 -0.6 -1.0 Predicted SAM-dependent methyltransferase compare
Psest_0740 -0.6 -1.1 Transcriptional regulator compare
Psest_2580 -0.6 -1.9 Uncharacterized membrane protein, required for colicin V production compare
Psest_2041 -0.6 -2.7 ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system compare
Psest_0186 -0.6 -2.0 Protein-disulfide isomerase compare
Psest_2083 -0.6 -2.2 Putative sterol carrier protein compare
Psest_3044 -0.6 -2.0 deoxycytidine triphosphate deaminase compare
Psest_0227 -0.6 -1.5 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific compare
Psest_3398 -0.6 -1.7 large conductance mechanosensitive channel protein compare


Specific Phenotypes

For 6 genes in this experiment

For anaerobic Sodium nitrite in Pseudomonas stutzeri RCH2

For anaerobic Sodium nitrite across organisms