Experiment set9H42 for Pseudomonas stutzeri RCH2

Compare to:

Nitrite/ lactate media with Nitrite 20mM

200 most important genes:

  gene name fitness t score description  
Psest_3031 -3.3 -1.8 hypothetical protein compare
Psest_0828 -3.2 -4.9 Nitric oxide reductase activation protein compare
Psest_0830 -3.2 -6.4 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases compare
Psest_1473 -3.1 -5.8 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_2491 -3.0 -4.6 succinyl-CoA synthetase, beta subunit compare
Psest_2490 -3.0 -7.5 succinyl-CoA synthetase, alpha subunit compare
Psest_0827 -3.0 -11.2 Nitric oxide reductase large subunit compare
Psest_2234 -3.0 -7.0 oxygen-independent coproporphyrinogen III oxidase compare
Psest_0826 -2.8 -6.3 Cytochrome c compare
Psest_3531 -2.8 -1.9 Peptidase propeptide and YPEB domain. compare
Psest_4316 -2.6 -4.3 ABC-type metal ion transport system, periplasmic component/surface antigen compare
Psest_0817 -2.5 -7.6 Ethylbenzene dehydrogenase. compare
Psest_0708 -2.4 -1.6 outer membrane assembly lipoprotein YfiO compare
Psest_0822 -2.3 -3.4 Transcriptional regulators compare
Psest_2585 -2.3 -1.5 pseudouridylate synthase I compare
Psest_0969 -2.3 -2.2 transcription elongation factor GreA compare
Psest_0820 -2.3 -4.5 hypothetical protein compare
Psest_0811 -2.2 -9.1 heme d1 biosynthesis radical SAM protein NirJ compare
Psest_0161 -2.2 -2.6 Membrane-bound metallopeptidase compare
Psest_1999 -2.2 -1.4 pseudouridine synthase compare
Psest_0958 -2.1 -3.5 Oligoketide cyclase/lipid transport protein compare
Psest_0821 -2.1 -8.7 Cytochrome D1 heme domain. compare
Psest_0815 -2.1 -10.1 Cytochrome c, mono- and diheme variants compare
Psest_0795 -2.1 -3.6 ABC-type multidrug transport system, ATPase component compare
Psest_0814 -2.1 -2.0 MoxR-like ATPases compare
Psest_3307 -2.0 -5.5 ABC-type transport system involved in resistance to organic solvents, ATPase component compare
Psest_2988 -2.0 -6.7 aspartate kinase, monofunctional class compare
Psest_0144 -2.0 -6.9 Fe-S cluster protector protein compare
Psest_3092 -1.9 -2.1 ribonuclease III, bacterial compare
Psest_1022 -1.9 -5.8 Thiol:disulfide interchange protein compare
Psest_0810 -1.9 -6.1 uroporphyrin-III C-methyltransferase compare
Psest_0508 -1.8 -6.7 gamma-glutamyl phosphate reductase compare
Psest_2923 -1.8 -2.4 hypothetical protein compare
Psest_0737 -1.8 -1.4 Cu(I)-responsive transcriptional regulator compare
Psest_1388 -1.8 -2.0 Uncharacterized protein conserved in bacteria compare
Psest_2579 -1.8 -2.4 amidophosphoribosyltransferase compare
Psest_0515 -1.7 -1.2 rare lipoprotein A compare
Psest_0796 -1.7 -3.0 ABC-type transport system involved in multi-copper enzyme maturation, permease component compare
Psest_2088 -1.7 -1.9 Uncharacterized protein conserved in bacteria compare
Psest_0212 -1.7 -1.6 exodeoxyribonuclease V, gamma subunit compare
Psest_1231 -1.6 -5.1 Na+/H+ antiporter NhaD and related arsenite permeases compare
Psest_3117 -1.6 -2.4 electron transport complex, RnfABCDGE type, E subunit compare
Psest_1656 -1.6 -1.5 NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit compare
Psest_2712 -1.6 -3.2 Surface lipoprotein compare
Psest_3301 -1.6 -3.4 Predicted transcriptional regulator, BolA superfamily compare
Psest_0823 -1.6 -3.0 Transcriptional regulators compare
Psest_3306 -1.6 -3.1 conserved hypothetical integral membrane protein compare
Psest_0799 -1.6 -2.3 Uncharacterized protein involved in response to NO compare
Psest_0813 -1.6 -4.0 Heme/copper-type cytochrome/quinol oxidase, subunit 3 compare
Psest_0797 -1.5 -6.6 Predicted lipoprotein involved in nitrous oxide reduction compare
Psest_1655 -1.5 -2.2 NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit compare
Psest_0794 -1.5 -10.2 parallel beta-helix repeat (two copies) compare
Psest_1295 -1.5 -2.5 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_3115 -1.5 -3.8 electron transport complex, RnfABCDGE type, D subunit compare
Psest_2104 -1.5 -1.0 IscR-regulated protein YhgI compare
Psest_3384 -1.5 -5.8 glutamate 5-kinase compare
Psest_3884 -1.5 -1.4 Signal transduction histidine kinase compare
Psest_1657 -1.4 -1.0 NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit compare
Psest_3998 -1.4 -3.8 glutamate--cysteine ligase compare
Psest_3236 -1.4 -2.3 hypothetical protein compare
Psest_4103 -1.4 -1.8 AraC-type DNA-binding domain-containing proteins compare
Psest_3767 -1.4 -3.1 tyrosine recombinase XerC compare
Psest_3573 -1.4 -3.0 dTDP-4-dehydrorhamnose reductase compare
Psest_1510 -1.4 -2.4 Putative Zn-dependent protease, contains TPR repeats compare
Psest_0836 -1.4 -4.4 Collagenase and related proteases compare
Psest_0793 -1.4 -9.3 Nitrous oxide reductase compare
Psest_2324 -1.4 -7.9 hypothetical protein compare
Psest_2110 -1.4 -2.2 hypothetical protein compare
Psest_3047 -1.4 -1.3 methionyl-tRNA synthetase/methionyl-tRNA synthetase C-terminal region/beta chain compare
Psest_3762 -1.4 -3.2 iron donor protein CyaY compare
Psest_1804 -1.4 -1.3 Superfamily II DNA and RNA helicases compare
Psest_2565 -1.4 -1.5 Transcriptional regulator compare
Psest_1504 -1.3 -2.3 tol-pal system protein YbgF compare
Psest_0655 -1.3 -1.9 Chemotaxis signal transduction protein compare
Psest_0845 -1.3 -0.7 hypothetical protein compare
Psest_3937 -1.3 -1.8 ATP-dependent protease HslVU, ATPase subunit compare
Psest_2325 -1.3 -5.2 alpha-L-glutamate ligase-related protein compare
Psest_3114 -1.3 -4.3 electron transport complex, RnfABCDGE type, C subunit compare
Psest_1824 -1.3 -2.1 Sugar transferases involved in lipopolysaccharide synthesis compare
Psest_3395 -1.3 -1.5 hypothetical protein compare
Psest_3303 -1.3 -3.5 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_1660 -1.3 -1.5 NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit compare
Psest_4315 -1.3 -2.3 ABC-type metal ion transport system, permease component compare
Psest_3305 -1.2 -4.1 ABC-type transport system involved in resistance to organic solvents, periplasmic component compare
Psest_1012 -1.2 -1.2 Signal transduction histidine kinase compare
Psest_4078 -1.2 -1.4 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D compare
Psest_1505 -1.2 -1.5 Organic radical activating enzymes compare
Psest_1532 -1.2 -2.1 DNA recombination-dependent growth factor C compare
Psest_3296 -1.2 -1.3 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain compare
Psest_3843 -1.2 -5.6 4-hydroxybenzoate synthetase (chorismate lyase) compare
Psest_0792 -1.2 -8.4 Regulator of nitric oxide reductase transcription compare
Psest_2531 -1.1 -6.1 cytochrome c oxidase accessory protein FixG compare
Psest_3304 -1.1 -2.7 ABC-type transport system involved in resistance to organic solvents, auxiliary component compare
Psest_2329 -1.1 -6.4 Transcriptional regulator compare
Psest_1661 -1.1 -0.8 Membrane-associated lipoprotein involved in thiamine biosynthesis compare
Psest_3112 -1.1 -2.4 electron transport complex, RnfABCDGE type, A subunit compare
Psest_1013 -1.1 -1.1 phosphoribosylamine--glycine ligase compare
Psest_2892 -1.1 -1.7 Transcriptional regulator compare
Psest_0952 -1.1 -1.6 Uncharacterized conserved protein compare
Psest_1617 -1.1 -1.2 Methylase involved in ubiquinone/menaquinone biosynthesis compare
Psest_1474 -1.1 -1.3 phosphoribosylaminoimidazole synthetase compare
Psest_0954 -1.1 -3.8 Fe-S oxidoreductase compare
Psest_0243 -1.1 -1.3 hypothetical protein compare
Psest_2794 -1.1 -2.7 Predicted permease, DMT superfamily compare
Psest_2850 -1.1 -1.2 Multisubunit Na+/H+ antiporter, MnhC subunit compare
Psest_3938 -1.1 -1.8 Uncharacterized protein conserved in bacteria compare
Psest_3810 -1.0 -0.7 orotate phosphoribosyltransferase compare
Psest_3190 -1.0 -2.9 pyruvate kinase compare
Psest_3159 -1.0 -1.7 phosphoribosylformylglycinamidine synthase, single chain form compare
Psest_1466 -1.0 -2.2 transcriptional regulator, Spx/MgsR family compare
Psest_0260 -1.0 -1.1 Cell division protein compare
Psest_0466 -1.0 -1.6 Lipopolysaccharide kinase (Kdo/WaaP) family. compare
Psest_0498 -1.0 -0.9 ribosome small subunit-dependent GTPase A compare
Psest_3973 -1.0 -1.5 Anti-sigma regulatory factor (Ser/Thr protein kinase) compare
Psest_2852 -1.0 -2.5 Outer membrane lipoprotein compare
Psest_4243 -1.0 -1.2 type VI secretion lipoprotein, VC_A0113 family compare
Psest_4142 -1.0 -1.0 hypothetical protein compare
Psest_1496 -1.0 -0.8 Holliday junction DNA helicase, RuvA subunit compare
Psest_0998 -0.9 -1.4 poly(A) polymerase compare
Psest_0732 -0.9 -2.5 efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family compare
Psest_3129 -0.9 -1.1 tyrosine recombinase XerD compare
Psest_2651 -0.9 -1.5 DNA topoisomerase I, bacterial compare
Psest_1562 -0.9 -1.4 Uncharacterized protein conserved in bacteria compare
Psest_4088 -0.9 -2.1 Transcriptional regulators compare
Psest_0953 -0.9 -4.2 iron-sulfur cluster-binding protein compare
Psest_1643 -0.9 -0.6 hypothetical protein compare
Psest_3535 -0.9 -2.0 hypothetical protein compare
Psest_1884 -0.9 -1.3 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_2136 -0.9 -5.0 Predicted homoserine dehydrogenase compare
Psest_3910 -0.9 -1.1 Uncharacterized protein conserved in bacteria compare
Psest_2748 -0.9 -1.5 Transcriptional regulator compare
Psest_1919 -0.9 -1.6 Uncharacterized membrane protein (homolog of Drosophila rhomboid) compare
Psest_1227 -0.9 -1.7 Predicted SAM-dependent methyltransferase compare
Psest_0227 -0.9 -2.0 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific compare
Psest_0950 -0.9 -1.9 hypothetical protein compare
Psest_0461 -0.8 -3.7 Glycosyltransferase involved in LPS biosynthesis compare
Psest_1659 -0.8 -0.9 NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit compare
Psest_1506 -0.8 -2.3 queuosine biosynthesis protein QueC compare
Psest_1622 -0.8 -1.6 hypothetical protein compare
Psest_1370 -0.8 -2.5 hypothetical protein compare
Psest_1681 -0.8 -2.0 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E compare
Psest_1636 -0.8 -1.9 putative transporter, required for glycine utilization (from data) compare
Psest_0296 -0.8 -3.7 glutathione synthetase, prokaryotic compare
Psest_4314 -0.8 -2.3 ABC-type metal ion transport system, ATPase component compare
Psest_1322 -0.8 -1.3 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases compare
Psest_2333 -0.8 -0.7 Protein of unknown function (DUF3359). compare
Psest_1762 -0.8 -0.7 cytochrome c-type biogenesis protein CcmI compare
Psest_1677 -0.8 -0.9 Protein-tyrosine-phosphatase compare
Psest_1641 -0.8 -2.7 MazG family protein compare
Psest_2001 -0.8 -0.8 2-phosphoglycolate phosphatase, prokaryotic compare
Psest_1854 -0.8 -2.3 Domain of Unknown Function (DUF748). compare
Psest_4080 -0.8 -2.6 Carbonic anhydrase compare
Psest_2756 -0.8 -0.8 hypothetical protein compare
Psest_2911 -0.8 -1.3 Protein of unknown function (DUF2945). compare
Psest_0449 -0.8 -4.8 Glutamine synthetase adenylyltransferase compare
Psest_4241 -0.8 -2.1 hypothetical protein compare
Psest_3140 -0.7 -3.4 NTP pyrophosphohydrolases including oxidative damage repair enzymes compare
Psest_0414 -0.7 -1.9 biotin biosynthesis protein BioC compare
Psest_1296 -0.7 -3.6 excinuclease ABC, B subunit compare
Psest_2953 -0.7 -1.1 Histone acetyltransferase compare
Psest_0537 -0.7 -0.8 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase compare
Psest_3188 -0.7 -2.2 hypothetical protein compare
Psest_0835 -0.7 -5.0 Collagenase and related proteases compare
Psest_2907 -0.7 -0.8 Protein of unknown function (DUF3618). compare
Psest_0310 -0.7 -1.5 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family compare
Psest_3979 -0.7 -1.5 Fructose-2,6-bisphosphatase compare
Psest_1306 -0.7 -1.0 hypothetical protein compare
Psest_1326 -0.7 -1.7 Uncharacterized conserved protein compare
Psest_2899 -0.7 -1.0 hypothetical protein compare
Psest_3554 -0.7 -1.1 Uncharacterized protein conserved in bacteria compare
Psest_0722 -0.7 -2.4 Predicted ATPase compare
Psest_1516 -0.7 -1.1 Uncharacterized lipoprotein compare
Psest_0367 -0.7 -1.3 Predicted branched-chain amino acid permease (azaleucine resistance) compare
Psest_3339 -0.7 -1.9 Signal transduction histidine kinase compare
Psest_1524 -0.7 -1.7 Sel1 repeat. compare
Psest_1905 -0.7 -1.3 Uncharacterized conserved protein, contains double-stranded beta-helix domain compare
Psest_2018 -0.7 -1.1 Uncharacterized conserved protein compare
Psest_3185 -0.7 -1.1 MoxR-like ATPases compare
Psest_0805 -0.7 -1.2 hypothetical protein compare
Psest_1292 -0.7 -2.6 monothiol glutaredoxin, Grx4 family compare
Psest_0093 -0.7 -1.6 Uncharacterized enzyme of phosphonate metabolism compare
Psest_0066 -0.7 -1.1 Protein of unknown function (DUF3060). compare
Psest_1053 -0.7 -1.2 hypothetical protein compare
Psest_3664 -0.7 -0.4 Predicted phosphotransferase related to Ser/Thr protein kinases compare
Psest_0857 -0.7 -1.1 Membrane transporters of cations and cationic drugs compare
Psest_1679 -0.7 -0.7 ribonuclease, Rne/Rng family compare
Psest_0697 -0.7 -1.3 ribosomal protein L9 compare
Psest_2265 -0.7 -1.4 Outer membrane protein compare
Psest_2407 -0.7 -1.5 nitrite reductase [NAD(P)H], small subunit compare
Psest_2946 -0.7 -1.2 septum site-determining protein MinD compare
Psest_3700 -0.7 -0.9 hypothetical protein compare
Psest_0031 -0.7 -1.2 Uncharacterized conserved protein compare
Psest_2066 -0.7 -1.4 ABC-type uncharacterized transport system, permease component compare
Psest_3398 -0.7 -1.8 large conductance mechanosensitive channel protein compare
Psest_3697 -0.7 -1.2 Outer membrane lipoprotein carrier protein LolA. compare
Psest_0415 -0.7 -1.7 dethiobiotin synthase compare
Psest_1204 -0.7 -1.1 Transcriptional regulators compare
Psest_1162 -0.7 -1.3 Spermidine synthase compare
Psest_3212 -0.7 -1.7 FKBP-type peptidyl-prolyl cis-trans isomerases 2 compare
Psest_1951 -0.6 -0.9 Uncharacterized protein conserved in bacteria compare


Specific Phenotypes

For 7 genes in this experiment

For anaerobic Sodium nitrite in Pseudomonas stutzeri RCH2

For anaerobic Sodium nitrite across organisms