Experiment set9H41 for Pseudomonas stutzeri RCH2

Compare to:

Nitrate/ lactate media with Nitrate 250mM

200 most important genes:

  gene name fitness t score description  
Psest_3480 -3.4 -3.2 molybdenum cofactor biosynthesis protein B, proteobacterial compare
Psest_2234 -3.1 -8.5 oxygen-independent coproporphyrinogen III oxidase compare
Psest_3129 -3.0 -2.0 tyrosine recombinase XerD compare
Psest_0814 -2.9 -2.8 MoxR-like ATPases compare
Psest_1473 -2.9 -6.8 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_3170 -2.7 -6.1 molybdenum cofactor biosynthesis protein MoaC compare
Psest_3479 -2.6 -5.7 molybdenum cofactor synthesis domain compare
Psest_2579 -2.5 -1.7 amidophosphoribosyltransferase compare
Psest_1656 -2.5 -1.7 NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit compare
Psest_0799 -2.5 -5.2 Uncharacterized protein involved in response to NO compare
Psest_2566 -2.4 -2.1 Uncharacterized protein conserved in bacteria compare
Psest_3168 -2.4 -2.2 Molybdopterin converting factor, large subunit compare
Psest_0958 -2.2 -4.4 Oligoketide cyclase/lipid transport protein compare
Psest_0508 -2.2 -8.1 gamma-glutamyl phosphate reductase compare
Psest_1961 -2.1 -9.5 molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial compare
Psest_3384 -2.1 -7.5 glutamate 5-kinase compare
Psest_3485 -2.1 -9.9 nitrate reductase, beta subunit compare
Psest_3486 -2.0 -13.1 respiratory nitrate reductase, alpha subunit compare
Psest_0826 -2.0 -7.1 Cytochrome c compare
Psest_2333 -2.0 -1.4 Protein of unknown function (DUF3359). compare
Psest_2561 -2.0 -1.4 hypothetical protein compare
Psest_2899 -2.0 -2.2 hypothetical protein compare
Psest_3488 -1.8 -3.6 Universal stress protein UspA and related nucleotide-binding proteins compare
Psest_4191 -1.8 -2.6 Transcriptional regulator compare
Psest_0827 -1.7 -10.5 Nitric oxide reductase large subunit compare
Psest_1655 -1.7 -2.8 NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit compare
Psest_3483 -1.7 -5.0 respiratory nitrate reductase, gamma subunit compare
Psest_0828 -1.7 -5.3 Nitric oxide reductase activation protein compare
Psest_2104 -1.6 -1.5 IscR-regulated protein YhgI compare
Psest_3767 -1.5 -3.9 tyrosine recombinase XerC compare
Psest_3226 -1.5 -1.3 Predicted membrane protein compare
Psest_1511 -1.5 -4.1 Predicted redox protein, regulator of disulfide bond formation compare
Psest_1115 -1.5 -2.1 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 compare
Psest_4314 -1.5 -3.9 ABC-type metal ion transport system, ATPase component compare
Psest_1295 -1.5 -3.1 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_3301 -1.4 -2.6 Predicted transcriptional regulator, BolA superfamily compare
Psest_0952 -1.4 -2.0 Uncharacterized conserved protein compare
Psest_4315 -1.4 -2.6 ABC-type metal ion transport system, permease component compare
Psest_1013 -1.4 -0.9 phosphoribosylamine--glycine ligase compare
Psest_1660 -1.4 -1.8 NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit compare
Psest_3490 -1.4 -2.9 Signal transduction histidine kinase, nitrate/nitrite-specific compare
Psest_0837 -1.4 -2.5 Putative lipid carrier protein compare
Psest_3489 -1.4 -6.8 hypothetical protein compare
Psest_1103 -1.4 -2.6 GTP-binding protein YchF compare
Psest_0144 -1.4 -5.0 Fe-S cluster protector protein compare
Psest_2651 -1.3 -2.4 DNA topoisomerase I, bacterial compare
Psest_1659 -1.3 -1.3 NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit compare
Psest_1474 -1.3 -1.3 phosphoribosylaminoimidazole synthetase compare
Psest_3084 -1.3 -1.9 methyltransferase, putative compare
Psest_1496 -1.2 -1.1 Holliday junction DNA helicase, RuvA subunit compare
Psest_3484 -1.2 -3.9 nitrate reductase molybdenum cofactor assembly chaperone compare
Psest_0063 -1.2 -6.0 tryptophan synthase, beta subunit compare
Psest_1661 -1.2 -1.1 Membrane-associated lipoprotein involved in thiamine biosynthesis compare
Psest_3159 -1.2 -1.9 phosphoribosylformylglycinamidine synthase, single chain form compare
Psest_1804 -1.2 -1.5 Superfamily II DNA and RNA helicases compare
Psest_3810 -1.2 -0.8 orotate phosphoribosyltransferase compare
Psest_3092 -1.2 -1.5 ribonuclease III, bacterial compare
Psest_2491 -1.2 -3.9 succinyl-CoA synthetase, beta subunit compare
Psest_2976 -1.2 -1.0 hypothetical protein compare
Psest_3850 -1.2 -1.0 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_2999 -1.2 -3.5 molybdenum ABC transporter, periplasmic molybdate-binding protein compare
Psest_1657 -1.2 -1.0 NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit compare
Psest_3998 -1.1 -3.8 glutamate--cysteine ligase compare
Psest_2329 -1.1 -7.1 Transcriptional regulator compare
Psest_0062 -1.1 -6.2 tryptophan synthase, alpha subunit compare
Psest_0835 -1.1 -7.7 Collagenase and related proteases compare
Psest_4098 -1.1 -2.2 Superfamily I DNA and RNA helicases compare
Psest_2001 -1.1 -1.2 2-phosphoglycolate phosphatase, prokaryotic compare
Psest_3000 -1.1 -4.6 molybdate ABC transporter, permease protein compare
Psest_2988 -1.1 -5.4 aspartate kinase, monofunctional class compare
Psest_2308 -1.1 -1.2 Predicted Fe-S protein compare
Psest_3881 -1.1 -1.5 hypothetical protein compare
Psest_1631 -1.1 -1.4 Uncharacterized conserved small protein compare
Psest_3042 -1.1 -1.0 Nitrate reductase cytochrome c-type subunit compare
Psest_3080 -1.1 -1.1 AraC-type DNA-binding domain-containing proteins compare
Psest_1506 -1.1 -3.0 queuosine biosynthesis protein QueC compare
Psest_0697 -1.1 -2.0 ribosomal protein L9 compare
Psest_1293 -1.0 -1.6 VanZ like family. compare
Psest_4103 -1.0 -1.6 AraC-type DNA-binding domain-containing proteins compare
Psest_3766 -1.0 -1.6 Uncharacterized protein conserved in bacteria compare
Psest_0334 -1.0 -2.0 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_2712 -1.0 -2.8 Surface lipoprotein compare
Psest_1774 -1.0 -1.9 Glutathione peroxidase compare
Psest_0993 -1.0 -5.1 Glucose-6-phosphate isomerase compare
Psest_2023 -1.0 -2.0 isocitrate dehydrogenase, NADP-dependent, monomeric type compare
Psest_3306 -1.0 -2.5 conserved hypothetical integral membrane protein compare
Psest_2025 -1.0 -1.2 cold shock domain protein CspD compare
Psest_1879 -1.0 -1.4 Trk-type K+ transport systems, membrane components compare
Psest_3188 -1.0 -2.4 hypothetical protein compare
Psest_0998 -0.9 -1.5 poly(A) polymerase compare
Psest_3662 -0.9 -1.9 DnaJ-domain-containing proteins 1 compare
Psest_3651 -0.9 -2.3 2-phosphoglycolate phosphatase, prokaryotic compare
Psest_2383 -0.9 -5.1 Predicted transcriptional regulators compare
Psest_3565 -0.9 -1.0 hypothetical protein compare
Psest_1625 -0.9 -2.6 hypothetical protein compare
Psest_3395 -0.9 -1.2 hypothetical protein compare
Psest_2975 -0.9 -2.1 tRNA_Arg_CCT compare
Psest_1058 -0.9 -2.2 ribosomal-protein-alanine acetyltransferase compare
Psest_1012 -0.9 -1.6 Signal transduction histidine kinase compare
Psest_0296 -0.9 -4.3 glutathione synthetase, prokaryotic compare
Psest_1292 -0.9 -3.6 monothiol glutaredoxin, Grx4 family compare
Psest_3304 -0.9 -2.6 ABC-type transport system involved in resistance to organic solvents, auxiliary component compare
Psest_3784 -0.9 -1.4 glyceraldehyde-3-phosphate dehydrogenase, type I compare
Psest_3001 -0.9 -2.7 molybdenum ABC transporter, ATP-binding protein compare
Psest_2626 -0.9 -2.1 Flp pilus assembly protein CpaB compare
Psest_1139 -0.9 -2.6 PAS domain S-box compare
Psest_0193 -0.9 -1.0 conserved hypothetical protein compare
Psest_1888 -0.9 -0.9 Sua5/YciO/YrdC/YwlC family protein compare
Psest_3478 -0.9 -1.1 Cytochrome B561 compare
Psest_0164 -0.9 -0.9 Glutaredoxin, GrxC family compare
Psest_1505 -0.9 -1.1 Organic radical activating enzymes compare
Psest_3045 -0.9 -1.3 Cold shock proteins compare
Psest_1249 -0.9 -2.9 serine O-acetyltransferase compare
Psest_0161 -0.8 -1.3 Membrane-bound metallopeptidase compare
Psest_0031 -0.8 -1.5 Uncharacterized conserved protein compare
Psest_2136 -0.8 -5.2 Predicted homoserine dehydrogenase compare
Psest_0725 -0.8 -1.4 Negative regulator of beta-lactamase expression compare
Psest_1463 -0.8 -0.9 SufE protein probably involved in Fe-S center assembly compare
Psest_3707 -0.8 -2.0 Transcriptional regulator compare
Psest_2490 -0.8 -4.6 succinyl-CoA synthetase, alpha subunit compare
Psest_3487 -0.8 -4.2 Nitrate/nitrite transporter compare
Psest_0800 -0.8 -3.0 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_0218 -0.8 -1.7 Acyl-CoA hydrolase compare
Psest_1886 -0.8 -2.6 Uncharacterized protein conserved in bacteria compare
Psest_2743 -0.8 -2.3 Methylase involved in ubiquinone/menaquinone biosynthesis compare
Psest_1663 -0.8 -1.8 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes compare
Psest_4363 -0.8 -3.3 ATPases involved in chromosome partitioning compare
Psest_2748 -0.8 -0.9 Transcriptional regulator compare
Psest_3113 -0.8 -1.2 electron transport complex, RnfABCDGE type, B subunit compare
Psest_1489 -0.8 -1.5 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases compare
Psest_0853 -0.8 -2.2 6-phosphogluconolactonase compare
Psest_0393 -0.8 -2.5 Methylase of chemotaxis methyl-accepting proteins compare
Psest_4170 -0.8 -1.5 Flagellar biosynthesis/type III secretory pathway protein compare
Psest_0133 -0.8 -0.7 type VI secretion protein, VC_A0107 family compare
Psest_3070 -0.8 -1.0 3-oxoadipyl-CoA thiolase compare
Psest_4298 -0.8 -0.8 Response regulator containing a CheY-like receiver domain and a GGDEF domain compare
Psest_3307 -0.7 -3.1 ABC-type transport system involved in resistance to organic solvents, ATPase component compare
Psest_1582 -0.7 -2.1 Protein of unknown function (DUF3087). compare
Psest_0954 -0.7 -3.1 Fe-S oxidoreductase compare
Psest_3114 -0.7 -3.1 electron transport complex, RnfABCDGE type, C subunit compare
Psest_1974 -0.7 -1.8 integration host factor, alpha subunit compare
Psest_3303 -0.7 -2.5 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_4307 -0.7 -1.5 ABC-type Zn2+ transport system, periplasmic component/surface adhesin compare
Psest_0836 -0.7 -3.0 Collagenase and related proteases compare
Psest_0823 -0.7 -2.0 Transcriptional regulators compare
Psest_0987 -0.7 -1.4 Predicted periplasmic or secreted lipoprotein compare
Psest_0187 -0.7 -1.9 Metal-dependent hydrolase compare
Psest_1428 -0.7 -1.8 Threonine dehydrogenase and related Zn-dependent dehydrogenases compare
Psest_3884 -0.7 -0.8 Signal transduction histidine kinase compare
Psest_4291 -0.7 -2.9 agmatine deiminase compare
Psest_3100 -0.7 -3.2 RNA polymerase sigma factor RpoE compare
Psest_3518 -0.7 -0.9 Transcriptional regulators compare
Psest_2088 -0.7 -1.2 Uncharacterized protein conserved in bacteria compare
Psest_3305 -0.7 -2.9 ABC-type transport system involved in resistance to organic solvents, periplasmic component compare
Psest_3482 -0.7 -2.2 Parvulin-like peptidyl-prolyl isomerase compare
Psest_0953 -0.7 -3.6 iron-sulfur cluster-binding protein compare
Psest_1242 -0.7 -1.0 tRNA-guanine transglycosylase, queuosine-34-forming compare
Psest_2565 -0.7 -1.1 Transcriptional regulator compare
Psest_3700 -0.7 -1.0 hypothetical protein compare
Psest_1975 -0.7 -3.3 Predicted transcriptional regulators compare
Psest_2645 -0.7 -3.2 Transcriptional regulator compare
Psest_2218 -0.7 -1.3 Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit compare
Psest_1913 -0.7 -1.6 Transcriptional regulator compare
Psest_1313 -0.7 -1.0 Uncharacterized conserved small protein compare
Psest_0325 -0.7 -5.2 Putative threonine efflux protein compare
Psest_2018 -0.7 -1.2 Uncharacterized conserved protein compare
Psest_1532 -0.7 -1.5 DNA recombination-dependent growth factor C compare
Psest_2288 -0.7 -1.7 trigger factor compare
Psest_3937 -0.7 -1.1 ATP-dependent protease HslVU, ATPase subunit compare
Psest_3556 -0.6 -2.4 2'-5' RNA ligase compare
Psest_0722 -0.6 -2.5 Predicted ATPase compare
Psest_3419 -0.6 -3.0 Predicted transcriptional regulators compare
Psest_0087 -0.6 -1.8 hypothetical protein compare
Psest_0708 -0.6 -0.8 outer membrane assembly lipoprotein YfiO compare
Psest_0170 -0.6 -2.5 5,10-methenyltetrahydrofolate synthetase compare
Psest_1840 -0.6 -5.9 Undecaprenyl-phosphate glucose phosphotransferase compare
Psest_1979 -0.6 -1.9 Nucleotidyltransferase/DNA polymerase involved in DNA repair compare
Psest_1516 -0.6 -1.2 Uncharacterized lipoprotein compare
Psest_2341 -0.6 -2.3 Lipase chaperone compare
Psest_0442 -0.6 -1.6 ATPases of the AAA+ class compare
Psest_3296 -0.6 -1.3 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain compare
Psest_2953 -0.6 -1.1 Histone acetyltransferase compare
Psest_0175 -0.6 -2.3 Xaa-Pro aminopeptidase compare
Psest_3477 -0.6 -1.9 Signal transduction histidine kinase compare
Psest_3878 -0.6 -1.4 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_2564 -0.6 -2.3 NAD(P)H:quinone oxidoreductase, type IV compare
Psest_2918 -0.6 -2.4 amino acid ABC transporter substrate-binding protein, PAAT family (TC 3.A.1.3.-) compare
Psest_1087 -0.6 -0.8 uncharacterized peroxidase-related enzyme compare
Psest_4054 -0.6 -1.7 alkanesulfonate monooxygenase, FMNH(2)-dependent compare
Psest_2285 -0.6 -1.3 ATP-dependent protease La compare
Psest_3112 -0.6 -1.6 electron transport complex, RnfABCDGE type, A subunit compare
Psest_3650 -0.6 -4.1 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_3927 -0.6 -1.9 thiazole biosynthesis/tRNA modification protein ThiI compare
Psest_1149 -0.6 -1.3 Protein affecting phage T7 exclusion by the F plasmid compare
Psest_0511 -0.6 -0.9 rRNA large subunit m3Psi methyltransferase RlmH compare
Psest_3389 -0.6 -1.4 hypothetical protein compare
Psest_3575 -0.6 -2.6 Arabinose efflux permease compare
Psest_0760 -0.6 -1.7 Polyketide cyclase / dehydrase and lipid transport. compare
Psest_3843 -0.6 -3.4 4-hydroxybenzoate synthetase (chorismate lyase) compare
Psest_2584 -0.6 -2.3 Phosphoribosylanthranilate isomerase compare


Specific Phenotypes

None in this experiment

For Pseudomonas stutzeri RCH2 in anaerobic experiments

For anaerobic Sodium nitrate across organisms