Experiment set9H39 for Pseudomonas stutzeri RCH2

Compare to:

Nitrate/ lactate media with Nitrate 250mM

200 most important genes:

  gene name fitness t score description  
Psest_3480 -3.9 -2.7 molybdenum cofactor biosynthesis protein B, proteobacterial compare
Psest_2234 -3.2 -6.4 oxygen-independent coproporphyrinogen III oxidase compare
Psest_1473 -3.1 -5.2 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_3168 -3.1 -2.1 Molybdopterin converting factor, large subunit compare
Psest_3700 -2.7 -2.0 hypothetical protein compare
Psest_1103 -2.7 -2.6 GTP-binding protein YchF compare
Psest_0508 -2.7 -7.3 gamma-glutamyl phosphate reductase compare
Psest_0799 -2.7 -4.8 Uncharacterized protein involved in response to NO compare
Psest_3129 -2.7 -1.8 tyrosine recombinase XerD compare
Psest_0826 -2.6 -7.1 Cytochrome c compare
Psest_0277 -2.5 -1.7 non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family compare
Psest_0031 -2.4 -1.7 Uncharacterized conserved protein compare
Psest_1679 -2.3 -1.6 ribonuclease, Rne/Rng family compare
Psest_3384 -2.3 -6.8 glutamate 5-kinase compare
Psest_1691 -2.3 -3.0 aminodeoxychorismate lyase compare
Psest_1999 -2.2 -1.5 pseudouridine synthase compare
Psest_0814 -2.2 -2.1 MoxR-like ATPases compare
Psest_3170 -2.2 -4.7 molybdenum cofactor biosynthesis protein MoaC compare
Psest_0958 -2.1 -3.2 Oligoketide cyclase/lipid transport protein compare
Psest_3047 -2.1 -1.3 methionyl-tRNA synthetase/methionyl-tRNA synthetase C-terminal region/beta chain compare
Psest_3092 -2.1 -2.0 ribonuclease III, bacterial compare
Psest_3476 -2.1 -2.0 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_1961 -2.1 -8.3 molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial compare
Psest_4310 -2.0 -1.9 ABC-type Mn2+/Zn2+ transport systems, permease components compare
Psest_2901 -2.0 -2.3 hypothetical protein compare
Psest_3479 -2.0 -4.3 molybdenum cofactor synthesis domain compare
Psest_3486 -2.0 -11.8 respiratory nitrate reductase, alpha subunit compare
Psest_1457 -2.0 -2.1 FOG: Ankyrin repeat compare
Psest_0243 -2.0 -1.9 hypothetical protein compare
Psest_3960 -2.0 -1.8 3'(2'),5'-bisphosphate nucleotidase, bacterial compare
Psest_3301 -2.0 -3.5 Predicted transcriptional regulator, BolA superfamily compare
Psest_3485 -1.9 -8.5 nitrate reductase, beta subunit compare
Psest_2424 -1.9 -2.6 K+ transport systems, NAD-binding component compare
Psest_0827 -1.9 -10.2 Nitric oxide reductase large subunit compare
Psest_1115 -1.9 -2.5 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 compare
Psest_0952 -1.9 -1.8 Uncharacterized conserved protein compare
Psest_1540 -1.9 -1.8 biotin-dependent carboxylase uncharacterized domain compare
Psest_3484 -1.8 -4.3 nitrate reductase molybdenum cofactor assembly chaperone compare
Psest_0828 -1.8 -4.7 Nitric oxide reductase activation protein compare
Psest_3000 -1.8 -5.8 molybdate ABC transporter, permease protein compare
Psest_2714 -1.8 -1.6 7-cyano-7-deazaguanine reductase compare
Psest_2579 -1.8 -2.6 amidophosphoribosyltransferase compare
Psest_1242 -1.7 -1.6 tRNA-guanine transglycosylase, queuosine-34-forming compare
Psest_3780 -1.7 -3.1 Transcriptional regulator compare
Psest_2333 -1.6 -1.2 Protein of unknown function (DUF3359). compare
Psest_4098 -1.6 -2.1 Superfamily I DNA and RNA helicases compare
Psest_2104 -1.6 -1.1 IscR-regulated protein YhgI compare
Psest_1511 -1.6 -2.8 Predicted redox protein, regulator of disulfide bond formation compare
Psest_3483 -1.6 -5.2 respiratory nitrate reductase, gamma subunit compare
Psest_3490 -1.5 -3.2 Signal transduction histidine kinase, nitrate/nitrite-specific compare
Psest_1655 -1.5 -2.2 NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit compare
Psest_1249 -1.5 -3.5 serine O-acetyltransferase compare
Psest_0697 -1.5 -2.4 ribosomal protein L9 compare
Psest_2566 -1.5 -1.5 Uncharacterized protein conserved in bacteria compare
Psest_0063 -1.5 -6.0 tryptophan synthase, beta subunit compare
Psest_0144 -1.4 -5.8 Fe-S cluster protector protein compare
Psest_3550 -1.4 -2.5 3,4-dihydroxy-2-butanone 4-phosphate synthase compare
Psest_3489 -1.4 -6.7 hypothetical protein compare
Psest_0953 -1.4 -5.7 iron-sulfur cluster-binding protein compare
Psest_1824 -1.4 -2.3 Sugar transferases involved in lipopolysaccharide synthesis compare
Psest_3647 -1.4 -3.8 Indole-3-glycerol phosphate synthase compare
Psest_1617 -1.4 -2.0 Methylase involved in ubiquinone/menaquinone biosynthesis compare
Psest_2892 -1.3 -1.7 Transcriptional regulator compare
Psest_1656 -1.3 -1.5 NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit compare
Psest_2308 -1.3 -1.2 Predicted Fe-S protein compare
Psest_1660 -1.3 -1.5 NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit compare
Psest_3042 -1.3 -1.1 Nitrate reductase cytochrome c-type subunit compare
Psest_0260 -1.3 -1.2 Cell division protein compare
Psest_0485 -1.3 -2.0 clan AA aspartic protease, TIGR02281 family compare
Psest_1139 -1.3 -3.2 PAS domain S-box compare
Psest_0954 -1.3 -4.2 Fe-S oxidoreductase compare
Psest_2088 -1.3 -1.7 Uncharacterized protein conserved in bacteria compare
Psest_3860 -1.3 -2.3 Predicted permeases compare
Psest_2329 -1.3 -7.2 Transcriptional regulator compare
Psest_4315 -1.3 -2.0 ABC-type metal ion transport system, permease component compare
Psest_3488 -1.3 -2.5 Universal stress protein UspA and related nucleotide-binding proteins compare
Psest_2651 -1.2 -1.9 DNA topoisomerase I, bacterial compare
Psest_0310 -1.2 -1.8 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family compare
Psest_0760 -1.2 -2.7 Polyketide cyclase / dehydrase and lipid transport. compare
Psest_0309 -1.2 -1.0 RND family efflux transporter, MFP subunit compare
Psest_1997 -1.2 -1.2 6-phosphogluconolactonase compare
Psest_0408 -1.2 -2.9 Protein involved in catabolism of external DNA compare
Psest_1049 -1.2 -2.7 Uncharacterized paraquat-inducible protein A compare
Psest_2712 -1.2 -2.8 Surface lipoprotein compare
Psest_3937 -1.2 -1.9 ATP-dependent protease HslVU, ATPase subunit compare
Psest_1661 -1.2 -0.8 Membrane-associated lipoprotein involved in thiamine biosynthesis compare
Psest_0835 -1.2 -7.4 Collagenase and related proteases compare
Psest_2491 -1.1 -3.3 succinyl-CoA synthetase, beta subunit compare
Psest_2637 -1.1 -1.1 putative methyltransferase, YaeB/AF_0241 family compare
Psest_0062 -1.1 -5.5 tryptophan synthase, alpha subunit compare
Psest_3159 -1.1 -1.1 phosphoribosylformylglycinamidine synthase, single chain form compare
Psest_0296 -1.1 -4.7 glutathione synthetase, prokaryotic compare
Psest_0692 -1.1 -2.0 rRNA methylase, putative, group 3 compare
Psest_2988 -1.1 -4.8 aspartate kinase, monofunctional class compare
Psest_2293 -1.1 -1.2 hypothetical protein compare
Psest_1295 -1.1 -2.3 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_1474 -1.1 -1.3 phosphoribosylaminoimidazole synthetase compare
Psest_4316 -1.1 -2.8 ABC-type metal ion transport system, periplasmic component/surface antigen compare
Psest_0795 -1.1 -2.6 ABC-type multidrug transport system, ATPase component compare
Psest_3828 -1.1 -1.1 zinc-binding alcohol dehydrogenase family protein compare
Psest_0292 -1.1 -2.2 Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase compare
Psest_1657 -1.1 -1.0 NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit compare
Psest_2899 -1.1 -1.4 hypothetical protein compare
Psest_0193 -1.1 -1.1 conserved hypothetical protein compare
Psest_1111 -1.1 -1.7 Flp pilus assembly protein TadD, contains TPR repeats compare
Psest_1506 -1.0 -2.6 queuosine biosynthesis protein QueC compare
Psest_2538 -1.0 -0.9 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases compare
Psest_1013 -1.0 -1.0 phosphoribosylamine--glycine ligase compare
Psest_3998 -1.0 -3.2 glutamate--cysteine ligase compare
Psest_0212 -1.0 -1.3 exodeoxyribonuclease V, gamma subunit compare
Psest_3044 -1.0 -2.7 deoxycytidine triphosphate deaminase compare
Psest_3810 -1.0 -0.7 orotate phosphoribosyltransferase compare
Psest_0993 -1.0 -4.5 Glucose-6-phosphate isomerase compare
Psest_4170 -1.0 -1.4 Flagellar biosynthesis/type III secretory pathway protein compare
Psest_2809 -1.0 -1.6 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
Psest_1804 -1.0 -1.4 Superfamily II DNA and RNA helicases compare
Psest_2066 -1.0 -1.9 ABC-type uncharacterized transport system, permease component compare
Psest_2999 -1.0 -2.9 molybdenum ABC transporter, periplasmic molybdate-binding protein compare
Psest_4064 -1.0 -1.6 Lactate dehydrogenase and related dehydrogenases compare
Psest_1428 -1.0 -2.0 Threonine dehydrogenase and related Zn-dependent dehydrogenases compare
Psest_1791 -1.0 -2.7 ABC-type transport system, involved in lipoprotein release, permease component compare
Psest_0097 -1.0 -1.1 phosphonates metabolism transcriptional regulator PhnF compare
Psest_3305 -1.0 -3.5 ABC-type transport system involved in resistance to organic solvents, periplasmic component compare
Psest_3555 -1.0 -2.5 Predicted methyltransferase compare
Psest_3762 -1.0 -2.5 iron donor protein CyaY compare
Psest_1496 -1.0 -0.8 Holliday junction DNA helicase, RuvA subunit compare
Psest_2983 -1.0 -1.9 hypothetical protein compare
Psest_0796 -1.0 -2.0 ABC-type transport system involved in multi-copper enzyme maturation, permease component compare
Psest_0312 -1.0 -3.3 Superfamily II DNA and RNA helicases compare
Psest_1012 -1.0 -1.2 Signal transduction histidine kinase compare
Psest_1843 -0.9 -1.6 Uncharacterized Fe-S protein compare
Psest_0800 -0.9 -2.8 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_3357 -0.9 -2.1 Predicted pyrophosphatase compare
Psest_2758 -0.9 -2.1 Predicted transcriptional regulators compare
Psest_3070 -0.9 -1.7 3-oxoadipyl-CoA thiolase compare
Psest_2490 -0.9 -4.7 succinyl-CoA synthetase, alpha subunit compare
Psest_3908 -0.9 -1.3 Cytochrome c553 compare
Psest_1505 -0.9 -1.2 Organic radical activating enzymes compare
Psest_0511 -0.9 -1.0 rRNA large subunit m3Psi methyltransferase RlmH compare
Psest_0457 -0.9 -1.8 Lipopolysaccharide kinase (Kdo/WaaP) family. compare
Psest_1313 -0.9 -1.2 Uncharacterized conserved small protein compare
Psest_3045 -0.9 -1.5 Cold shock proteins compare
Psest_0498 -0.9 -0.8 ribosome small subunit-dependent GTPase A compare
Psest_1292 -0.9 -3.2 monothiol glutaredoxin, Grx4 family compare
Psest_3117 -0.9 -1.8 electron transport complex, RnfABCDGE type, E subunit compare
Psest_4044 -0.9 -1.0 type I site-specific deoxyribonuclease, HsdR family compare
Psest_3001 -0.9 -2.2 molybdenum ABC transporter, ATP-binding protein compare
Psest_1813 -0.9 -4.5 pseudaminic acid biosynthesis-associated protein PseG compare
Psest_0133 -0.9 -1.1 type VI secretion protein, VC_A0107 family compare
Psest_3492 -0.9 -2.0 hypothetical protein compare
Psest_1886 -0.9 -2.4 Uncharacterized protein conserved in bacteria compare
Psest_2771 -0.9 -1.6 Predicted membrane protein compare
Psest_0466 -0.9 -1.5 Lipopolysaccharide kinase (Kdo/WaaP) family. compare
Psest_2001 -0.9 -0.9 2-phosphoglycolate phosphatase, prokaryotic compare
Psest_3307 -0.8 -3.1 ABC-type transport system involved in resistance to organic solvents, ATPase component compare
Psest_2500 -0.8 -1.8 hypothetical protein compare
Psest_0734 -0.8 -2.0 RND family efflux transporter, MFP subunit compare
Psest_4103 -0.8 -1.0 AraC-type DNA-binding domain-containing proteins compare
Psest_3943 -0.8 -2.1 Phosphoribosyl-AMP cyclohydrolase compare
Psest_3487 -0.8 -4.1 Nitrate/nitrite transporter compare
Psest_0161 -0.8 -1.4 Membrane-bound metallopeptidase compare
Psest_1177 -0.8 -2.3 pyruvate kinase compare
Psest_1860 -0.8 -0.7 Uncharacterized conserved protein compare
Psest_2136 -0.8 -4.7 Predicted homoserine dehydrogenase compare
Psest_3482 -0.8 -2.2 Parvulin-like peptidyl-prolyl isomerase compare
Psest_4201 -0.8 -1.3 general secretion pathway protein F compare
Psest_4010 -0.8 -1.0 peroxiredoxin, OsmC subfamily compare
Psest_1241 -0.8 -2.6 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
Psest_0660 -0.8 -1.7 Methyl-accepting chemotaxis protein compare
Psest_0837 -0.8 -1.3 Putative lipid carrier protein compare
Psest_3843 -0.8 -3.9 4-hydroxybenzoate synthetase (chorismate lyase) compare
Psest_0790 -0.8 -1.9 Uncharacterized protein conserved in bacteria compare
Psest_3834 -0.8 -2.8 NAD(P)H-nitrite reductase compare
Psest_1642 -0.8 -1.6 Uncharacterized protein conserved in bacteria compare
Psest_1184 -0.8 -1.8 Uncharacterized protein, possibly involved in utilization of glycolate and propanediol compare
Psest_1994 -0.8 -1.9 Amidases related to nicotinamidase compare
Psest_1087 -0.8 -0.8 uncharacterized peroxidase-related enzyme compare
Psest_2067 -0.8 -0.7 ABC-type oligopeptide transport system, periplasmic component compare
Psest_1149 -0.8 -1.6 Protein affecting phage T7 exclusion by the F plasmid compare
Psest_1601 -0.8 -1.2 Signal transduction histidine kinase compare
Psest_0316 -0.8 -1.3 Cytochrome c556 compare
Psest_0357 -0.7 -1.0 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_1199 -0.7 -2.1 OHCU decarboxylase compare
Psest_1326 -0.7 -1.7 Uncharacterized conserved protein compare
Psest_3902 -0.7 -1.3 hypothetical protein compare
Psest_2923 -0.7 -1.3 hypothetical protein compare
Psest_0644 -0.7 -1.7 siderophore ferric iron reductase, AHA_1954 family compare
Psest_3767 -0.7 -1.9 tyrosine recombinase XerC compare
Psest_1786 -0.7 -3.2 Rhodanese-related sulfurtransferase compare
Psest_4191 -0.7 -1.4 Transcriptional regulator compare
Psest_3296 -0.7 -1.2 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain compare
Psest_1357 -0.7 -1.7 Uncharacterized protein conserved in bacteria compare
Psest_4126 -0.7 -1.2 Predicted peroxiredoxins compare
Psest_0785 -0.7 -1.1 Thioredoxin reductase compare
Psest_1659 -0.7 -0.8 NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit compare
Psest_3113 -0.7 -1.0 electron transport complex, RnfABCDGE type, B subunit compare
Psest_3895 -0.7 -1.7 hypothetical protein compare
Psest_1974 -0.7 -1.9 integration host factor, alpha subunit compare
Psest_3236 -0.7 -1.4 hypothetical protein compare
Psest_1516 -0.7 -1.1 Uncharacterized lipoprotein compare


Specific Phenotypes

None in this experiment

For Pseudomonas stutzeri RCH2 in anaerobic experiments

For anaerobic Sodium nitrate across organisms